Wall clock time and date at job start Mon Mar 30 2020 04:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48503 * 109.46894 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47122 * 299.99418 * 3 2 1 6 6 H 1.48498 * 109.47430 * 59.99803 * 3 2 1 7 7 C 1.37875 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47316 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47576 * 180.02562 * 11 10 9 13 13 C 1.34766 * 120.00403 * 180.02562 * 12 11 10 14 14 O 1.21571 * 119.99851 * 359.97438 * 13 12 11 15 15 C 1.47706 * 120.00195 * 179.97438 * 13 12 11 16 16 C 1.39738 * 120.13247 * 0.02562 * 15 13 12 17 17 C 1.37859 * 120.02134 * 180.02562 * 16 15 13 18 18 C 1.38385 * 120.28635 * 0.02562 * 17 16 15 19 19 C 1.38786 * 120.26335 * 359.96886 * 18 17 16 20 20 N 1.39877 * 120.00661 * 179.97438 * 19 18 17 21 21 C 1.38990 * 119.97929 * 0.26377 * 19 18 17 22 22 F 1.35102 * 120.14211 * 179.75432 * 21 19 18 23 23 H 0.97000 * 119.99620 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47312 * 59.99244 * 9 7 2 25 25 H 1.09000 * 109.46643 * 299.99491 * 9 7 2 26 26 H 1.09008 * 109.47010 * 59.99992 * 10 9 7 27 27 H 1.08997 * 109.47434 * 300.00363 * 10 9 7 28 28 H 1.08996 * 109.47305 * 60.00330 * 11 10 9 29 29 H 1.09001 * 109.47433 * 299.99897 * 11 10 9 30 30 H 0.97001 * 119.99121 * 359.97438 * 12 11 10 31 31 H 1.08001 * 119.99202 * 0.02562 * 16 15 13 32 32 H 1.07999 * 119.85896 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.87062 * 179.97438 * 18 17 16 34 34 H 0.97001 * 120.00505 * 359.97438 * 20 19 18 35 35 H 0.97005 * 119.99771 * 179.71949 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9829 -7.3713 0.0019 14 8 0.7876 -7.5934 0.0020 15 6 2.9427 -8.4940 0.0020 16 6 4.3171 -8.2419 0.0024 17 6 5.2109 -9.2915 0.0019 18 6 4.7535 -10.5976 0.0005 19 6 3.3910 -10.8616 0.0001 20 7 2.9346 -12.1838 -0.0020 21 6 2.4802 -9.8117 -0.0043 22 9 1.1531 -10.0649 -0.0097 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 3.3858 -5.9234 0.0014 31 1 4.6794 -7.2245 0.0032 32 1 6.2726 -9.0937 0.0027 33 1 5.4596 -11.4148 -0.0003 34 1 3.5704 -12.9164 -0.0035 35 1 1.9823 -12.3682 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310234488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:13 Heat of formation + Delta-G solvation = -71.301840 kcal Electronic energy + Delta-G solvation = -18968.235739 eV Core-core repulsion = 15686.865442 eV Total energy + Delta-G solvation = -3281.370297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.81849 -40.00470 -38.62571 -35.40449 -34.91729 -33.29509 -31.52894 -30.68162 -28.94165 -26.78889 -24.39620 -22.87195 -22.36152 -20.74777 -20.17628 -18.24386 -17.59803 -17.21212 -16.38623 -15.93299 -15.85762 -15.54171 -15.09375 -14.94720 -14.83765 -14.42544 -13.77584 -13.60954 -13.17804 -12.94310 -12.31024 -12.21190 -11.89565 -11.74051 -11.73322 -11.06001 -10.91089 -10.72070 -10.56752 -9.91695 -9.86102 -9.38777 -9.14017 -9.09814 -8.73325 -8.36697 -7.92400 -6.01103 -4.04164 0.55593 1.08170 2.84381 3.16967 3.30638 3.38102 3.41488 3.50993 3.63542 4.01002 4.44748 4.51304 4.58644 4.79936 4.96360 5.25874 5.34779 5.59720 5.67839 5.75716 5.79212 5.91403 6.08550 6.17315 6.37986 6.47550 6.60896 6.83748 6.98688 7.00838 7.29360 7.64845 7.68395 7.77228 7.97885 8.35080 8.39823 9.02818 9.60069 11.10264 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.044841 B = 0.003076 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.272567 B = 9099.102909 C = 9697.621792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.717 5.717 13 C 0.549 3.451 14 O -0.528 6.528 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.087 4.087 18 C -0.155 4.155 19 C 0.177 3.823 20 N -0.874 5.874 21 C 0.078 3.922 22 F -0.119 7.119 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.398 0.602 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.403 0.597 35 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.780 -23.569 0.004 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.369 5.369 13 C 0.334 3.666 14 O -0.405 6.405 15 C -0.124 4.124 16 C -0.139 4.139 17 C -0.106 4.106 18 C -0.178 4.178 19 C 0.072 3.928 20 N -0.414 5.414 21 C 0.053 3.947 22 F -0.098 7.098 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.232 0.768 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.693 -23.551 0.001 25.865 hybrid contribution 0.549 0.633 0.004 0.838 sum 11.242 -22.918 0.005 25.527 Atomic orbital electron populations 1.69982 1.06064 1.26574 1.50661 1.25039 0.94858 0.99327 0.95303 0.86524 0.80040 0.83759 0.77592 1.19749 1.21008 1.21013 1.21241 0.93030 0.90919 1.50783 0.92570 1.19038 0.93865 0.90835 0.97717 1.21894 0.99799 0.93250 1.00937 1.21697 0.91834 0.84856 1.02232 1.46097 1.10942 1.05542 1.74302 1.18041 0.87943 0.82947 0.77637 1.90834 1.15901 1.84694 1.49110 1.19976 0.94753 0.92110 1.05577 1.21040 0.90751 1.00098 1.01998 1.20879 1.00060 0.91464 0.98215 1.20643 0.92228 0.97950 1.07007 1.17675 0.92577 0.84837 0.97739 1.42328 1.10677 1.03194 1.85246 1.17124 0.77737 0.91580 1.08297 1.91539 1.30054 1.94449 1.93745 0.92980 0.96229 0.96223 0.92652 0.92643 0.91543 0.91546 0.76685 0.84734 0.84701 0.84927 0.76838 0.76772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.37 5.27 -26.74 -0.14 -2.51 16 11 C 0.12 2.10 5.67 -4.04 -0.02 2.08 16 12 N -0.72 -10.82 5.51 -61.30 -0.34 -11.16 16 13 C 0.55 9.08 7.77 -12.40 -0.10 8.98 16 14 O -0.53 -10.90 15.34 5.30 0.08 -10.82 16 15 C -0.12 -1.58 5.88 -104.94 -0.62 -2.20 16 16 C -0.12 -1.13 9.53 -39.16 -0.37 -1.50 16 17 C -0.09 -0.65 10.02 -39.67 -0.40 -1.05 16 18 C -0.15 -1.16 9.88 -39.32 -0.39 -1.55 16 19 C 0.18 1.70 6.76 -83.71 -0.57 1.13 16 20 N -0.87 -5.95 9.10 32.44 0.30 -5.65 16 21 C 0.08 1.02 7.30 -38.77 -0.28 0.73 16 22 F -0.12 -1.84 14.92 2.25 0.03 -1.81 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.40 4.71 6.50 -40.82 -0.27 4.45 16 31 H 0.13 1.02 6.40 -52.49 -0.34 0.68 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.40 1.58 8.84 -40.82 -0.36 1.22 16 35 H 0.40 2.72 8.32 -40.82 -0.34 2.38 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -34.44 307.69 -7.23 -41.68 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.23 Total: 1.66 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -3.43 Total: -8.81 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.69 Total: -43.01 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.03 Total: -1.81 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.44 -7.23 -41.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310234488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.626 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds