Wall clock time and date at job start Mon Mar 30 2020 04:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48503 * 109.46894 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47122 * 299.99418 * 3 2 1 6 6 H 1.48498 * 109.47430 * 59.99803 * 3 2 1 7 7 C 1.37875 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47316 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47576 * 180.02562 * 11 10 9 13 13 C 1.34766 * 120.00403 * 180.02562 * 12 11 10 14 14 O 1.21571 * 119.99851 * 359.97438 * 13 12 11 15 15 C 1.47706 * 120.00195 * 179.97438 * 13 12 11 16 16 C 1.39738 * 120.13247 * 0.02562 * 15 13 12 17 17 C 1.37859 * 120.02134 * 180.02562 * 16 15 13 18 18 C 1.38385 * 120.28635 * 0.02562 * 17 16 15 19 19 C 1.38786 * 120.26335 * 359.96886 * 18 17 16 20 20 N 1.39877 * 120.00661 * 179.97438 * 19 18 17 21 21 C 1.38990 * 119.97929 * 0.26377 * 19 18 17 22 22 F 1.35102 * 120.14211 * 179.75432 * 21 19 18 23 23 H 0.97000 * 119.99620 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47312 * 59.99244 * 9 7 2 25 25 H 1.09000 * 109.46643 * 299.99491 * 9 7 2 26 26 H 1.09008 * 109.47010 * 59.99992 * 10 9 7 27 27 H 1.08997 * 109.47434 * 300.00363 * 10 9 7 28 28 H 1.08996 * 109.47305 * 60.00330 * 11 10 9 29 29 H 1.09001 * 109.47433 * 299.99897 * 11 10 9 30 30 H 0.97001 * 119.99121 * 359.97438 * 12 11 10 31 31 H 1.08001 * 119.99202 * 0.02562 * 16 15 13 32 32 H 1.07999 * 119.85896 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.87062 * 179.97438 * 18 17 16 34 34 H 0.97001 * 120.00505 * 359.97438 * 20 19 18 35 35 H 0.97005 * 119.99771 * 179.71949 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9829 -7.3713 0.0019 14 8 0.7876 -7.5934 0.0020 15 6 2.9427 -8.4940 0.0020 16 6 4.3171 -8.2419 0.0024 17 6 5.2109 -9.2915 0.0019 18 6 4.7535 -10.5976 0.0005 19 6 3.3910 -10.8616 0.0001 20 7 2.9346 -12.1838 -0.0020 21 6 2.4802 -9.8117 -0.0043 22 9 1.1531 -10.0649 -0.0097 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 3.3858 -5.9234 0.0014 31 1 4.6794 -7.2245 0.0032 32 1 6.2726 -9.0937 0.0027 33 1 5.4596 -11.4148 -0.0003 34 1 3.5704 -12.9164 -0.0035 35 1 1.9823 -12.3682 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310234488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:12 Heat of formation + Delta-G solvation = -96.394485 kcal Electronic energy + Delta-G solvation = -18969.323837 eV Core-core repulsion = 15686.865442 eV Total energy + Delta-G solvation = -3282.458396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -49.80346 -41.09812 -39.56665 -37.00625 -35.66914 -35.14290 -33.13231 -31.71539 -29.72947 -28.51689 -25.72283 -24.31803 -23.16477 -22.32532 -21.51576 -19.21332 -18.58815 -18.30929 -18.05496 -16.96807 -16.92310 -16.66050 -16.45434 -16.40274 -15.86887 -15.49560 -15.31296 -14.88640 -14.26548 -13.96490 -13.76092 -13.74516 -13.50467 -12.95855 -12.77651 -12.62862 -12.47983 -12.33113 -11.75520 -11.67755 -11.60507 -11.23451 -10.95661 -10.55642 -10.24555 -9.82365 -8.58437 -8.18853 -6.30464 -0.29472 0.38078 1.42866 1.43128 1.56475 1.79835 2.03749 2.43273 2.76307 2.82927 3.15155 3.24600 3.57521 3.93474 4.02233 4.16673 4.19678 4.36506 4.53625 4.58948 4.92146 4.92980 4.98968 5.00914 5.16968 5.21804 5.36435 5.42293 5.52651 5.70625 5.74299 5.84708 6.22385 6.35904 6.48340 6.85275 6.87468 7.13632 7.39333 8.93688 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.044841 B = 0.003076 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.272567 B = 9099.102909 C = 9697.621792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.128 3.872 12 N -0.703 5.703 13 C 0.544 3.456 14 O -0.582 6.582 15 C -0.144 4.144 16 C -0.116 4.116 17 C -0.074 4.074 18 C -0.140 4.140 19 C 0.177 3.823 20 N -0.865 5.865 21 C 0.033 3.967 22 F -0.146 7.146 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.417 0.583 31 H 0.155 0.845 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.418 0.582 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.028 -24.350 0.005 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.087 0.913 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.355 5.355 13 C 0.333 3.667 14 O -0.463 6.463 15 C -0.149 4.149 16 C -0.137 4.137 17 C -0.093 4.093 18 C -0.163 4.163 19 C 0.070 3.930 20 N -0.406 5.406 21 C 0.008 3.992 22 F -0.125 7.125 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.255 0.745 31 H 0.172 0.828 32 H 0.194 0.806 33 H 0.189 0.811 34 H 0.250 0.750 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 15.008 -24.368 0.003 28.618 hybrid contribution -0.715 0.770 0.003 1.051 sum 14.292 -23.597 0.006 27.588 Atomic orbital electron populations 1.70134 1.08037 1.27728 1.51854 1.26059 0.95748 1.03686 0.94811 0.85337 0.79280 0.78490 0.77552 1.17956 1.20651 1.20660 1.21714 0.93842 0.91861 1.50219 0.91271 1.18957 0.94481 0.93067 0.95037 1.21600 0.98442 0.91312 1.02465 1.21300 0.91992 0.85480 1.00758 1.45815 1.11392 1.04487 1.73845 1.18677 0.87980 0.83867 0.76210 1.90795 1.18406 1.85474 1.51647 1.19820 0.95553 0.90724 1.08788 1.21335 0.89202 1.02043 1.01114 1.21371 1.01615 0.90626 0.95665 1.21175 0.91569 0.99379 1.04207 1.17853 0.93002 0.84934 0.97201 1.42351 1.11162 1.02797 1.84319 1.17588 0.77311 0.92884 1.11406 1.91456 1.32076 1.94636 1.94295 0.92848 0.99038 0.99033 0.90987 0.90979 0.93203 0.93206 0.74469 0.82757 0.80650 0.81106 0.74984 0.76905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.54 -30.09 9.11 25.60 0.23 -29.85 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 11 C 0.13 4.78 5.67 86.38 0.49 5.27 16 12 N -0.70 -21.13 5.51 -466.12 -2.57 -23.70 16 13 C 0.54 18.62 7.77 86.75 0.67 19.30 16 14 O -0.58 -25.69 15.34 -3.94 -0.06 -25.75 16 15 C -0.14 -3.78 5.88 -20.07 -0.12 -3.90 16 16 C -0.12 -1.90 9.53 22.54 0.21 -1.68 16 17 C -0.07 -0.76 10.02 22.22 0.22 -0.54 16 18 C -0.14 -1.50 9.88 22.44 0.22 -1.28 16 19 C 0.18 3.06 6.76 38.17 0.26 3.32 16 20 N -0.86 -10.29 9.10 -51.27 -0.47 -10.76 16 21 C 0.03 0.88 7.30 22.79 0.17 1.05 16 22 F -0.15 -4.83 14.92 44.97 0.67 -4.16 16 23 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 27 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.42 9.12 6.50 -92.71 -0.60 8.51 16 31 H 0.15 1.78 6.40 -2.91 -0.02 1.76 16 32 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 33 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 34 H 0.42 2.11 8.84 -92.71 -0.82 1.29 16 35 H 0.40 5.23 8.32 -92.70 -0.77 4.46 16 Total: -1.00 -79.16 307.69 1.98 -77.19 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -1.05 Total: 9.42 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 3.13 Total: -10.59 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -2.75 Total: -91.98 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.06 Total: -25.75 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.67 Total: -4.16 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -79.16 1.98 -77.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310234488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.205 kcal (2) G-P(sol) polarization free energy of solvation -79.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds