Wall clock time and date at job start Mon Mar 30 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00140 * 3 2 1 5 5 H 1.48499 * 109.47078 * 29.99851 * 3 2 1 6 6 H 1.48503 * 109.47230 * 150.00520 * 3 2 1 7 7 C 1.37884 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99838 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21570 * 119.99748 * 0.02562 * 13 12 11 15 15 C 1.47696 * 120.00110 * 179.97438 * 13 12 11 16 16 C 1.39609 * 120.13155 * 359.73029 * 15 13 12 17 17 C 1.38515 * 119.79988 * 179.81046 * 16 15 13 18 18 N 1.39857 * 119.96812 * 180.20876 * 17 16 15 19 19 C 1.39063 * 120.06664 * 0.44083 * 17 16 15 20 20 C 1.38119 * 120.26196 * 359.78673 * 19 17 16 21 21 C 1.38322 * 120.20395 * 0.02562 * 20 19 17 22 22 F 1.35096 * 120.03186 * 179.97438 * 21 20 19 23 23 H 0.96992 * 120.00108 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 25 25 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 26 26 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 27 27 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 28 28 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 29 29 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 30 30 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 31 31 H 1.08004 * 120.10267 * 0.02562 * 16 15 13 32 32 H 0.96995 * 120.00211 * 180.23002 * 18 17 16 33 33 H 0.96996 * 119.99940 * 0.22882 * 18 17 16 34 34 H 1.07999 * 119.86957 * 179.76980 * 19 17 16 35 35 H 1.08001 * 119.89678 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 -0.0012 12 7 6.0399 -4.0179 -0.0004 13 6 7.3649 -4.2641 -0.0018 14 8 8.1549 -3.3401 -0.0032 15 6 7.8573 -5.6566 -0.0005 16 6 6.9525 -6.7198 0.0079 17 6 7.4218 -8.0231 0.0051 18 7 6.5185 -9.0908 0.0090 19 6 8.7901 -8.2709 0.0032 20 6 9.6876 -7.2210 -0.0003 21 6 9.2311 -5.9153 -0.0014 22 9 10.1121 -4.8911 -0.0043 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6797 0.8894 25 1 3.8745 -0.6809 -0.8905 26 1 3.6578 -3.1506 -0.8897 27 1 3.6585 -3.1503 0.8903 28 1 5.9156 -2.1224 0.8884 29 1 5.9142 -2.1231 -0.8916 30 1 5.4095 -4.7551 0.0003 31 1 5.8899 -6.5268 0.0130 32 1 6.8466 -10.0036 0.0104 33 1 5.5640 -8.9186 0.0104 34 1 9.1525 -9.2882 0.0048 35 1 10.7491 -7.4202 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310253255.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:19 Heat of formation + Delta-G solvation = -68.011886 kcal Electronic energy + Delta-G solvation = -18996.247215 eV Core-core repulsion = 15715.019581 eV Total energy + Delta-G solvation = -3281.227634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.72480 -40.13180 -38.72561 -35.55880 -34.54916 -33.40866 -32.03908 -30.98786 -28.52991 -27.26541 -24.49497 -23.11653 -22.05924 -20.82533 -20.08775 -18.22487 -17.65381 -17.31491 -16.75357 -15.94792 -15.78323 -15.70643 -15.15225 -15.03392 -14.60920 -14.13134 -13.93577 -13.45398 -13.22319 -13.07339 -13.00466 -12.70791 -12.03118 -11.93505 -11.63899 -11.07763 -10.90160 -10.67333 -10.22530 -9.98645 -9.79059 -9.60161 -9.47281 -9.23628 -8.86266 -8.56009 -7.84227 -6.07054 -4.05810 0.50967 1.04479 2.79008 3.19643 3.31676 3.39263 3.42281 3.43915 3.58188 4.13444 4.35710 4.44336 4.46850 4.84806 4.94991 5.27257 5.28858 5.36694 5.57090 5.65148 5.71091 5.82699 5.83815 6.00709 6.32616 6.42441 6.43513 6.67693 6.77647 6.99769 7.22130 7.31498 7.35705 7.58143 7.75733 8.27672 8.49398 8.96480 9.55338 11.06173 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.003489 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.276162 B = 8022.445135 C = 8913.971170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.718 5.718 13 C 0.550 3.450 14 O -0.526 6.526 15 C -0.118 4.118 16 C -0.140 4.140 17 C 0.199 3.801 18 N -0.876 5.876 19 C -0.147 4.147 20 C -0.115 4.115 21 C 0.098 3.902 22 F -0.121 7.121 23 H 0.263 0.737 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.398 0.602 31 H 0.136 0.864 32 H 0.400 0.600 33 H 0.402 0.598 34 H 0.134 0.866 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.369 -20.560 0.044 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.370 5.370 13 C 0.336 3.664 14 O -0.403 6.403 15 C -0.122 4.122 16 C -0.163 4.163 17 C 0.095 3.905 18 N -0.416 5.416 19 C -0.170 4.170 20 C -0.135 4.135 21 C 0.076 3.924 22 F -0.100 7.100 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.153 0.847 32 H 0.228 0.772 33 H 0.230 0.770 34 H 0.151 0.849 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.817 -19.661 0.046 25.873 hybrid contribution -0.173 0.366 -0.025 0.406 sum 16.644 -19.296 0.021 25.482 Atomic orbital electron populations 1.69906 1.06328 1.26985 1.51008 1.25027 0.94747 0.99256 0.94433 0.86776 0.80431 0.83489 0.78622 1.20225 1.21363 1.18849 1.21092 0.89298 0.94497 1.51138 0.91026 1.19504 0.97264 0.91426 0.96744 1.21713 0.90535 1.01146 1.01725 1.21706 0.96161 0.80796 1.02217 1.46056 1.06235 1.10172 1.74527 1.18048 0.82933 0.87928 0.77537 1.90838 1.55214 1.45252 1.49004 1.19889 0.92548 0.94099 1.05705 1.20635 0.99481 0.90040 1.06183 1.17622 0.89887 0.88010 0.95025 1.42461 1.07773 1.06118 1.85237 1.20579 0.90763 0.99397 1.06283 1.20879 1.00967 0.90193 1.01421 1.17452 0.85801 0.84711 1.04423 1.91570 1.67159 1.57734 1.93491 0.92684 0.96234 0.96683 0.92096 0.92062 0.91524 0.91524 0.76690 0.84678 0.77173 0.76950 0.84864 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 11 C 0.11 1.92 5.67 -4.04 -0.02 1.90 16 12 N -0.72 -10.28 5.51 -61.29 -0.34 -10.62 16 13 C 0.55 8.74 7.77 -12.40 -0.10 8.64 16 14 O -0.53 -10.47 15.33 5.30 0.08 -10.39 16 15 C -0.12 -1.50 5.88 -104.94 -0.62 -2.12 16 16 C -0.14 -1.31 9.38 -38.97 -0.37 -1.68 16 17 C 0.20 1.52 6.75 -83.79 -0.57 0.95 16 18 N -0.88 -4.04 9.10 32.40 0.29 -3.74 16 19 C -0.15 -1.06 9.88 -39.32 -0.39 -1.45 16 20 C -0.12 -1.03 10.00 -39.59 -0.40 -1.43 16 21 C 0.10 1.25 7.28 -38.97 -0.28 0.97 16 22 F -0.12 -1.87 15.54 2.25 0.03 -1.84 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 25 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.40 4.48 6.50 -40.82 -0.27 4.21 16 31 H 0.14 1.01 6.40 -52.48 -0.34 0.67 16 32 H 0.40 1.06 8.84 -40.82 -0.36 0.70 16 33 H 0.40 1.42 8.84 -40.82 -0.36 1.06 16 34 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -34.76 305.04 -6.86 -41.62 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.21 Total: 0.21 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.42 Total: -10.00 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.73 Total: -41.31 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.03 Total: -1.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.76 -6.86 -41.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310253255.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.397 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds