Wall clock time and date at job start Mon Mar 30 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00140 * 3 2 1 5 5 H 1.48499 * 109.47078 * 29.99851 * 3 2 1 6 6 H 1.48503 * 109.47230 * 150.00520 * 3 2 1 7 7 C 1.37884 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99838 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21570 * 119.99748 * 0.02562 * 13 12 11 15 15 C 1.47696 * 120.00110 * 179.97438 * 13 12 11 16 16 C 1.39609 * 120.13155 * 359.73029 * 15 13 12 17 17 C 1.38515 * 119.79988 * 179.81046 * 16 15 13 18 18 N 1.39857 * 119.96812 * 180.20876 * 17 16 15 19 19 C 1.39063 * 120.06664 * 0.44083 * 17 16 15 20 20 C 1.38119 * 120.26196 * 359.78673 * 19 17 16 21 21 C 1.38322 * 120.20395 * 0.02562 * 20 19 17 22 22 F 1.35096 * 120.03186 * 179.97438 * 21 20 19 23 23 H 0.96992 * 120.00108 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 25 25 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 26 26 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 27 27 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 28 28 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 29 29 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 30 30 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 31 31 H 1.08004 * 120.10267 * 0.02562 * 16 15 13 32 32 H 0.96995 * 120.00211 * 180.23002 * 18 17 16 33 33 H 0.96996 * 119.99940 * 0.22882 * 18 17 16 34 34 H 1.07999 * 119.86957 * 179.76980 * 19 17 16 35 35 H 1.08001 * 119.89678 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 -0.0012 12 7 6.0399 -4.0179 -0.0004 13 6 7.3649 -4.2641 -0.0018 14 8 8.1549 -3.3401 -0.0032 15 6 7.8573 -5.6566 -0.0005 16 6 6.9525 -6.7198 0.0079 17 6 7.4218 -8.0231 0.0051 18 7 6.5185 -9.0908 0.0090 19 6 8.7901 -8.2709 0.0032 20 6 9.6876 -7.2210 -0.0003 21 6 9.2311 -5.9153 -0.0014 22 9 10.1121 -4.8911 -0.0043 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6797 0.8894 25 1 3.8745 -0.6809 -0.8905 26 1 3.6578 -3.1506 -0.8897 27 1 3.6585 -3.1503 0.8903 28 1 5.9156 -2.1224 0.8884 29 1 5.9142 -2.1231 -0.8916 30 1 5.4095 -4.7551 0.0003 31 1 5.8899 -6.5268 0.0130 32 1 6.8466 -10.0036 0.0104 33 1 5.5640 -8.9186 0.0104 34 1 9.1525 -9.2882 0.0048 35 1 10.7491 -7.4202 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310253255.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:19 Heat of formation + Delta-G solvation = -93.725495 kcal Electronic energy + Delta-G solvation = -18997.362241 eV Core-core repulsion = 15715.019581 eV Total energy + Delta-G solvation = -3282.342660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.70232 -41.14599 -39.63684 -37.05097 -35.23617 -35.14134 -33.55560 -32.19530 -29.18989 -28.95141 -25.63346 -24.38323 -23.04026 -22.29206 -21.41652 -19.28106 -18.81986 -18.35758 -18.06139 -16.96037 -16.92374 -16.66631 -16.38520 -16.24306 -15.79971 -15.40537 -15.35895 -14.78184 -14.43309 -13.95700 -13.90891 -13.81824 -13.72941 -13.62827 -12.76799 -12.72292 -12.38002 -11.94657 -11.79778 -11.60993 -11.36525 -11.33986 -11.01599 -10.76337 -10.32083 -10.04555 -8.44459 -8.29739 -6.33297 -0.29549 0.32915 1.36686 1.38510 1.50178 1.78996 2.05808 2.36146 2.73756 2.92362 3.06201 3.37148 3.56232 3.74420 4.07586 4.16932 4.17920 4.25878 4.47732 4.61317 4.76779 4.86481 4.87048 5.02954 5.06382 5.13604 5.18672 5.31800 5.46876 5.54727 5.64602 5.70986 6.27032 6.44313 6.52650 6.74570 7.00929 7.11288 7.31596 8.86580 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.003489 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.276162 B = 8022.445135 C = 8913.971170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.529 4.529 8 H 0.040 0.960 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.125 3.875 12 N -0.706 5.706 13 C 0.546 3.454 14 O -0.576 6.576 15 C -0.138 4.138 16 C -0.143 4.143 17 C 0.208 3.792 18 N -0.860 5.860 19 C -0.135 4.135 20 C -0.108 4.108 21 C 0.058 3.942 22 F -0.148 7.148 23 H 0.266 0.734 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.414 0.586 31 H 0.152 0.848 32 H 0.413 0.587 33 H 0.410 0.590 34 H 0.171 0.829 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.417 -22.780 0.032 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.567 4.567 8 H 0.058 0.942 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.001 3.999 12 N -0.359 5.359 13 C 0.334 3.666 14 O -0.457 6.457 15 C -0.143 4.143 16 C -0.167 4.167 17 C 0.101 3.899 18 N -0.400 5.400 19 C -0.158 4.158 20 C -0.127 4.127 21 C 0.035 3.965 22 F -0.127 7.127 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.252 0.748 31 H 0.169 0.831 32 H 0.244 0.756 33 H 0.239 0.761 34 H 0.189 0.811 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 17.832 -21.960 0.035 28.288 hybrid contribution -0.583 0.837 -0.022 1.020 sum 17.249 -21.123 0.013 27.271 Atomic orbital electron populations 1.70046 1.08149 1.28126 1.52716 1.25951 0.95569 1.03324 0.94254 0.85729 0.79513 0.78696 0.79169 1.19285 1.20986 1.17295 1.21453 0.91774 0.93328 1.50189 0.94165 1.19471 0.94191 0.94628 0.96816 1.21485 0.91492 0.98280 1.02432 1.21380 0.94749 0.82193 1.01543 1.45841 1.06362 1.09673 1.73978 1.18595 0.82657 0.89037 0.76264 1.90800 1.56382 1.47065 1.51456 1.19709 0.93244 0.92868 1.08468 1.20758 0.99758 0.90095 1.06082 1.17724 0.90694 0.88011 0.93515 1.42479 1.07909 1.06077 1.83579 1.21007 0.90252 1.00590 1.03902 1.21141 1.02553 0.88851 1.00150 1.17941 0.85666 0.85572 1.07287 1.91489 1.67954 1.59202 1.94052 0.92492 0.96131 0.96254 0.91395 0.91402 0.92349 0.92272 0.74787 0.83073 0.75589 0.76054 0.81137 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 2 C 0.01 0.35 5.47 84.66 0.46 0.81 16 3 Si 0.95 44.68 27.47 68.60 1.88 46.57 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 7 C -0.53 -29.97 9.66 25.60 0.25 -29.73 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 11 C 0.12 4.15 5.67 86.38 0.49 4.64 16 12 N -0.71 -19.80 5.51 -466.09 -2.57 -22.37 16 13 C 0.55 17.61 7.77 86.74 0.67 18.28 16 14 O -0.58 -23.86 15.33 -3.94 -0.06 -23.92 16 15 C -0.14 -3.48 5.88 -20.07 -0.12 -3.60 16 16 C -0.14 -2.39 9.38 22.67 0.21 -2.18 16 17 C 0.21 2.44 6.75 38.12 0.26 2.69 16 18 N -0.86 -4.32 9.10 -51.40 -0.47 -4.79 16 19 C -0.13 -1.43 9.88 22.44 0.22 -1.20 16 20 C -0.11 -1.71 10.00 22.26 0.22 -1.49 16 21 C 0.06 1.46 7.28 22.67 0.17 1.63 16 22 F -0.15 -4.81 15.54 44.97 0.70 -4.11 16 23 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 24 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 25 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 26 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.41 8.70 6.50 -92.71 -0.60 8.10 16 31 H 0.15 1.87 6.40 -2.91 -0.02 1.85 16 32 H 0.41 0.25 8.84 -92.71 -0.82 -0.57 16 33 H 0.41 1.27 8.84 -92.71 -0.82 0.45 16 34 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 35 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -77.98 305.04 1.76 -76.22 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -1.15 Total: 5.37 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 3.12 Total: -14.04 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -2.73 Total: -86.09 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.70 Total: -4.11 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -77.98 1.76 -76.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310253255.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.502 kcal (2) G-P(sol) polarization free energy of solvation -77.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds