Wall clock time and date at job start Mon Mar 30 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47794 * 2 1 4 4 C 1.46505 * 120.00003 * 274.62176 * 3 2 1 5 5 C 1.50700 * 109.46598 * 269.99332 * 4 3 2 6 6 H 1.07999 * 120.00466 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99803 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00416 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47066 * 90.00123 * 9 7 5 11 11 H 1.48496 * 109.47002 * 210.00053 * 9 7 5 12 12 H 1.48493 * 109.46862 * 330.00021 * 9 7 5 13 13 C 1.34781 * 120.00232 * 94.61184 * 3 2 1 14 14 O 1.21571 * 119.99562 * 4.98127 * 13 3 2 15 15 C 1.47705 * 120.00154 * 184.97581 * 13 3 2 16 16 C 1.39730 * 120.13371 * 303.64697 * 15 13 3 17 17 C 1.37860 * 120.01609 * 179.97438 * 16 15 13 18 18 C 1.38387 * 120.28816 * 0.02720 * 17 16 15 19 19 C 1.38779 * 120.26566 * 359.95153 * 18 17 16 20 20 N 1.39873 * 120.01150 * 180.02562 * 19 18 17 21 21 C 1.38989 * 119.97515 * 0.27806 * 19 18 17 22 22 F 1.35105 * 120.14020 * 179.74800 * 21 19 18 23 23 H 1.08994 * 109.47755 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46935 * 300.00470 * 1 2 3 25 25 H 1.09007 * 109.46861 * 59.99619 * 1 2 3 26 26 H 1.09003 * 109.46935 * 239.99530 * 2 1 3 27 27 H 1.09007 * 109.46861 * 120.00381 * 2 1 3 28 28 H 1.08989 * 109.46975 * 29.99565 * 4 3 2 29 29 H 1.09000 * 109.47073 * 149.99808 * 4 3 2 30 30 H 0.97003 * 120.00816 * 180.02562 * 8 7 5 31 31 H 1.08003 * 119.99784 * 0.02562 * 16 15 13 32 32 H 1.08001 * 119.85648 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.86170 * 179.97438 * 18 17 16 34 34 H 0.96998 * 119.99967 * 0.02562 * 20 19 18 35 35 H 0.96998 * 119.99952 * 179.72662 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1663 2.1058 -1.2646 5 6 3.5523 1.8821 -1.8126 6 1 4.2530 1.2625 -1.2726 7 6 3.9261 2.4693 -3.0027 8 7 5.1354 2.2738 -3.4812 9 14 2.7148 3.5427 -3.9356 10 1 2.8519 4.9509 -3.4845 11 1 2.9984 3.4593 -5.3908 12 1 1.3314 3.0713 -3.6730 13 6 2.3317 1.9852 1.1634 14 8 2.2957 1.3568 2.2035 15 6 2.7187 3.4106 1.1747 16 6 3.7878 3.8534 0.3916 17 6 4.1467 5.1844 0.4036 18 6 3.4524 6.0874 1.1896 19 6 2.3884 5.6605 1.9716 20 7 1.6901 6.5779 2.7637 21 6 2.0203 4.3203 1.9716 22 9 0.9882 3.9003 2.7356 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.4295 1.7416 -1.9804 29 1 2.0109 3.1710 -1.0933 30 1 5.3985 2.6872 -4.3183 31 1 4.3328 3.1529 -0.2240 32 1 4.9737 5.5238 -0.2024 33 1 3.7397 7.1284 1.1940 34 1 1.9493 7.5126 2.7661 35 1 0.9439 6.2801 3.3072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310263061.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:01 Heat of formation + Delta-G solvation = -52.731798 kcal Electronic energy + Delta-G solvation = -20746.328554 eV Core-core repulsion = 17465.763514 eV Total energy + Delta-G solvation = -3280.565040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.43210 -39.59953 -38.11258 -35.32507 -34.33063 -32.75465 -31.13907 -29.86125 -28.20089 -27.68250 -24.14829 -22.73842 -21.96551 -21.79642 -18.88075 -17.41896 -17.18201 -16.85081 -16.61186 -15.78853 -15.36942 -15.14336 -14.73050 -14.40663 -14.18568 -13.90243 -13.36090 -13.02021 -12.74981 -12.47519 -12.44404 -12.06198 -11.87340 -11.64386 -11.53590 -11.09122 -10.83662 -10.75047 -10.52318 -10.30512 -10.25300 -9.64701 -9.22215 -8.75891 -8.41237 -7.78019 -7.29341 -6.26971 -4.27388 1.34144 1.81849 3.16442 3.24519 3.26926 3.29564 3.68390 3.98466 4.14046 4.24008 4.56424 5.03478 5.04726 5.35908 5.42277 5.61449 5.74029 5.75753 5.82880 6.00384 6.21834 6.24495 6.36799 6.37074 6.49180 6.55989 6.72400 6.88450 6.94589 7.17535 7.33927 7.40960 7.57049 7.77450 8.06948 8.35814 8.75068 8.86354 9.32386 10.84392 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.009436 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.880593 B = 2966.607762 C = 4133.473280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 N -0.583 5.583 4 C 0.204 3.796 5 C -0.540 4.540 6 H 0.082 0.918 7 C 0.082 3.918 8 N -0.886 5.886 9 Si 0.866 3.134 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.565 3.435 14 O -0.556 6.556 15 C -0.109 4.109 16 C -0.093 4.093 17 C -0.091 4.091 18 C -0.161 4.161 19 C 0.166 3.834 20 N -0.880 5.880 21 C 0.054 3.946 22 F -0.139 7.139 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.267 0.733 31 H 0.174 0.826 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.399 0.601 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.060 6.970 6.285 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.312 5.312 4 C 0.083 3.917 5 C -0.578 4.578 6 H 0.100 0.900 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.692 3.308 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.352 3.648 14 O -0.436 6.436 15 C -0.113 4.113 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.184 4.184 19 C 0.063 3.937 20 N -0.422 5.422 21 C 0.030 3.970 22 F -0.118 7.118 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.191 0.809 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.227 0.773 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.976 6.604 6.631 11.104 hybrid contribution -0.925 0.900 -0.462 1.371 sum -6.901 7.504 6.169 11.916 Atomic orbital electron populations 1.22132 0.96770 1.01464 1.01914 1.21313 0.93337 0.83194 1.03211 1.47844 1.62633 1.13646 1.07103 1.19905 0.98263 0.92468 0.81077 1.21325 0.96928 1.32418 1.07164 0.90007 1.24815 0.94952 0.95822 0.96661 1.69885 1.18169 1.43494 1.20746 0.86989 0.82305 0.81782 0.79719 1.19496 1.20905 1.18916 1.18037 0.76812 0.86272 0.83647 1.90706 1.54616 1.65937 1.32388 1.19785 0.98886 0.93521 0.99144 1.22041 0.95837 0.97273 0.96168 1.20981 0.99397 0.92896 0.97720 1.20591 0.97119 1.00206 1.00513 1.17484 0.94125 0.87651 0.94455 1.42188 1.38597 1.09422 1.51980 1.17042 0.91005 0.90911 0.98076 1.91428 1.56051 1.90587 1.73698 0.92061 0.92862 0.92641 0.90076 0.90340 0.94767 0.94842 0.92246 0.80904 0.85038 0.85602 0.77295 0.77359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.11 2.09 6.21 -4.05 -0.03 2.06 16 3 N -0.58 -12.49 2.46 -176.23 -0.43 -12.92 16 4 C 0.20 4.56 3.80 -5.19 -0.02 4.54 16 5 C -0.54 -13.59 7.11 -34.44 -0.24 -13.84 16 6 H 0.08 2.30 8.00 -52.49 -0.42 1.88 16 7 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.89 -24.46 13.96 55.43 0.77 -23.68 16 9 Si 0.87 19.37 27.47 -169.99 -4.67 14.70 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 13 C 0.56 12.70 6.85 -12.39 -0.08 12.61 16 14 O -0.56 -13.60 16.43 5.30 0.09 -13.51 16 15 C -0.11 -2.25 4.63 -104.94 -0.49 -2.74 16 16 C -0.09 -1.85 7.79 -39.16 -0.30 -2.16 16 17 C -0.09 -1.51 10.02 -39.66 -0.40 -1.91 16 18 C -0.16 -2.34 9.88 -39.33 -0.39 -2.73 16 19 C 0.17 2.57 6.76 -83.71 -0.57 2.01 16 20 N -0.88 -10.11 9.10 32.44 0.30 -9.82 16 21 C 0.05 1.02 7.29 -38.77 -0.28 0.73 16 22 F -0.14 -2.67 16.08 2.25 0.04 -2.64 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 27 H 0.08 1.48 7.23 -51.93 -0.38 1.10 16 28 H 0.03 0.75 7.13 -51.94 -0.37 0.38 16 29 H 0.03 0.75 5.56 -51.93 -0.29 0.46 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.17 3.86 5.19 -52.48 -0.27 3.59 16 32 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.40 3.39 8.84 -40.82 -0.36 3.03 16 35 H 0.40 4.31 8.32 -40.82 -0.34 3.97 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -29.93 299.53 -6.04 -35.97 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.13 Total: 8.99 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.52 Total: -1.62 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.64 Total: -46.42 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.93 -6.04 -35.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310263061.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.759 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds