Wall clock time and date at job start Mon Mar 30 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47794 * 2 1 4 4 C 1.46505 * 120.00003 * 274.62176 * 3 2 1 5 5 C 1.50700 * 109.46598 * 269.99332 * 4 3 2 6 6 H 1.07999 * 120.00466 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99803 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00416 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47066 * 90.00123 * 9 7 5 11 11 H 1.48496 * 109.47002 * 210.00053 * 9 7 5 12 12 H 1.48493 * 109.46862 * 330.00021 * 9 7 5 13 13 C 1.34781 * 120.00232 * 94.61184 * 3 2 1 14 14 O 1.21571 * 119.99562 * 4.98127 * 13 3 2 15 15 C 1.47705 * 120.00154 * 184.97581 * 13 3 2 16 16 C 1.39730 * 120.13371 * 303.64697 * 15 13 3 17 17 C 1.37860 * 120.01609 * 179.97438 * 16 15 13 18 18 C 1.38387 * 120.28816 * 0.02720 * 17 16 15 19 19 C 1.38779 * 120.26566 * 359.95153 * 18 17 16 20 20 N 1.39873 * 120.01150 * 180.02562 * 19 18 17 21 21 C 1.38989 * 119.97515 * 0.27806 * 19 18 17 22 22 F 1.35105 * 120.14020 * 179.74800 * 21 19 18 23 23 H 1.08994 * 109.47755 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46935 * 300.00470 * 1 2 3 25 25 H 1.09007 * 109.46861 * 59.99619 * 1 2 3 26 26 H 1.09003 * 109.46935 * 239.99530 * 2 1 3 27 27 H 1.09007 * 109.46861 * 120.00381 * 2 1 3 28 28 H 1.08989 * 109.46975 * 29.99565 * 4 3 2 29 29 H 1.09000 * 109.47073 * 149.99808 * 4 3 2 30 30 H 0.97003 * 120.00816 * 180.02562 * 8 7 5 31 31 H 1.08003 * 119.99784 * 0.02562 * 16 15 13 32 32 H 1.08001 * 119.85648 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.86170 * 179.97438 * 18 17 16 34 34 H 0.96998 * 119.99967 * 0.02562 * 20 19 18 35 35 H 0.96998 * 119.99952 * 179.72662 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1663 2.1058 -1.2646 5 6 3.5523 1.8821 -1.8126 6 1 4.2530 1.2625 -1.2726 7 6 3.9261 2.4693 -3.0027 8 7 5.1354 2.2738 -3.4812 9 14 2.7148 3.5427 -3.9356 10 1 2.8519 4.9509 -3.4845 11 1 2.9984 3.4593 -5.3908 12 1 1.3314 3.0713 -3.6730 13 6 2.3317 1.9852 1.1634 14 8 2.2957 1.3568 2.2035 15 6 2.7187 3.4106 1.1747 16 6 3.7878 3.8534 0.3916 17 6 4.1467 5.1844 0.4036 18 6 3.4524 6.0874 1.1896 19 6 2.3884 5.6605 1.9716 20 7 1.6901 6.5779 2.7637 21 6 2.0203 4.3203 1.9716 22 9 0.9882 3.9003 2.7356 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.4295 1.7416 -1.9804 29 1 2.0109 3.1710 -1.0933 30 1 5.3985 2.6872 -4.3183 31 1 4.3328 3.1529 -0.2240 32 1 4.9737 5.5238 -0.2024 33 1 3.7397 7.1284 1.1940 34 1 1.9493 7.5126 2.7661 35 1 0.9439 6.2801 3.3072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310263061.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:59 Heat of formation + Delta-G solvation = -72.640475 kcal Electronic energy + Delta-G solvation = -20747.191859 eV Core-core repulsion = 17465.763514 eV Total energy + Delta-G solvation = -3281.428345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.85909 -41.20537 -39.51561 -37.08810 -35.55355 -34.66097 -32.62370 -31.32599 -29.53334 -29.43521 -25.59139 -24.59350 -23.40040 -23.15069 -20.44789 -19.11888 -18.70321 -18.35701 -18.08441 -17.35745 -16.74560 -16.59829 -16.28029 -15.91384 -15.73130 -15.39035 -14.84605 -14.70100 -14.33498 -14.11135 -13.78080 -13.60030 -13.42138 -13.24030 -12.86329 -12.66201 -12.47605 -12.36790 -12.09156 -11.90883 -11.68934 -11.54051 -10.91965 -10.73328 -9.80954 -9.52210 -8.48984 -8.26682 -6.31661 -0.05202 0.46918 1.41685 1.44035 1.51895 1.63510 2.14962 2.36806 2.73783 2.86360 3.06374 3.24754 3.52452 4.04206 4.10108 4.20177 4.32882 4.48237 4.50916 4.66654 4.68378 4.83275 4.88728 4.96707 5.01326 5.06525 5.25490 5.44330 5.46777 5.61022 5.66090 5.82825 6.17532 6.42477 6.50833 6.68905 6.93762 7.11884 7.32017 8.88300 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.009436 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.880593 B = 2966.607762 C = 4133.473280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.103 3.897 3 N -0.586 5.586 4 C 0.216 3.784 5 C -0.531 4.531 6 H 0.036 0.964 7 C 0.036 3.964 8 N -0.932 5.932 9 Si 0.925 3.075 10 H -0.256 1.256 11 H -0.284 1.284 12 H -0.249 1.249 13 C 0.556 3.444 14 O -0.588 6.588 15 C -0.133 4.133 16 C -0.117 4.117 17 C -0.087 4.087 18 C -0.144 4.144 19 C 0.183 3.817 20 N -0.860 5.860 21 C 0.029 3.971 22 F -0.147 7.147 23 H 0.092 0.908 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.270 0.730 31 H 0.139 0.861 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.418 0.582 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 9.768 6.200 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 N -0.315 5.315 4 C 0.094 3.906 5 C -0.569 4.569 6 H 0.055 0.945 7 C -0.164 4.164 8 N -0.571 5.571 9 Si 0.749 3.251 10 H -0.180 1.180 11 H -0.210 1.210 12 H -0.173 1.173 13 C 0.345 3.655 14 O -0.471 6.471 15 C -0.137 4.137 16 C -0.137 4.137 17 C -0.105 4.105 18 C -0.167 4.167 19 C 0.077 3.923 20 N -0.403 5.403 21 C 0.004 3.996 22 F -0.126 7.126 23 H 0.111 0.889 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.191 0.809 34 H 0.250 0.750 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.615 9.427 6.568 13.784 hybrid contribution -0.353 0.039 -0.335 0.489 sum -7.969 9.466 6.233 13.854 Atomic orbital electron populations 1.22034 0.94030 1.03456 1.01515 1.21532 0.95585 0.81924 1.02860 1.47979 1.62319 1.14577 1.06669 1.19715 0.96501 0.92967 0.81400 1.21269 0.97526 1.31308 1.06829 0.94545 1.25522 0.96476 0.97028 0.97409 1.70018 1.20342 1.45216 1.21503 0.86032 0.80580 0.80526 0.78011 1.18050 1.20999 1.17271 1.18506 0.76243 0.87363 0.83390 1.90660 1.56167 1.66950 1.33284 1.19717 1.00206 0.92729 1.01043 1.21694 0.96383 0.98389 0.97234 1.21206 0.99800 0.91662 0.97867 1.20997 0.95471 1.01873 0.98320 1.17577 0.93928 0.86805 0.94036 1.42186 1.37835 1.09810 1.50435 1.17223 0.91496 0.92158 0.98710 1.91396 1.56385 1.90913 1.73900 0.88915 0.93986 0.92132 0.89846 0.91272 0.93719 0.94268 0.92105 0.84387 0.83229 0.80946 0.75029 0.76695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.24 71.98 0.74 -3.91 16 2 C 0.10 3.90 6.21 86.38 0.54 4.44 16 3 N -0.59 -25.81 2.46 -829.73 -2.04 -27.85 16 4 C 0.22 9.68 3.80 85.63 0.33 10.01 16 5 C -0.53 -27.62 7.11 25.60 0.18 -27.43 16 6 H 0.04 2.18 8.00 -2.91 -0.02 2.16 16 7 C 0.04 1.87 5.47 84.65 0.46 2.34 16 8 N -0.93 -52.79 13.96 21.45 0.30 -52.49 16 9 Si 0.93 39.07 27.47 68.60 1.88 40.95 16 10 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.25 -9.82 6.54 99.48 0.65 -9.17 16 13 C 0.56 25.92 6.85 86.74 0.59 26.51 16 14 O -0.59 -29.95 16.43 -3.94 -0.06 -30.02 16 15 C -0.13 -5.56 4.63 -20.07 -0.09 -5.66 16 16 C -0.12 -4.68 7.79 22.54 0.18 -4.51 16 17 C -0.09 -2.70 10.02 22.22 0.22 -2.48 16 18 C -0.14 -3.59 9.88 22.43 0.22 -3.37 16 19 C 0.18 5.07 6.76 38.17 0.26 5.33 16 20 N -0.86 -16.24 9.10 -51.28 -0.47 -16.71 16 21 C 0.03 1.06 7.29 22.79 0.17 1.23 16 22 F -0.15 -5.59 16.08 44.97 0.72 -4.87 16 23 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.08 3.06 8.11 -2.39 -0.02 3.04 16 27 H 0.07 2.72 7.23 -2.38 -0.02 2.70 16 28 H 0.04 1.92 7.13 -2.39 -0.02 1.90 16 29 H 0.04 1.74 5.56 -2.39 -0.01 1.73 16 30 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.14 6.52 5.19 -2.91 -0.02 6.50 16 32 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 33 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.42 4.95 8.84 -92.71 -0.82 4.13 16 35 H 0.40 7.35 8.32 -92.71 -0.77 6.57 16 Total: -1.00 -67.79 299.53 3.62 -64.17 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.51 Total: 24.34 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 3.79 Total: 2.49 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -2.21 Total: -97.06 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.06 Total: -30.02 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.72 Total: -4.87 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.88 Total: 40.95 kcal Total: -67.79 3.62 -64.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310263061.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.473 kcal (2) G-P(sol) polarization free energy of solvation -67.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds