Wall clock time and date at job start Mon Mar 30 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41379 * 126.58305 * 2 1 4 4 C 1.34520 * 106.83938 * 179.97438 * 3 2 1 5 5 O 1.34299 * 108.42083 * 0.02562 * 4 3 2 6 6 C 1.34307 * 109.47784 * 359.76593 * 5 4 3 7 7 C 1.50697 * 125.78942 * 180.23409 * 6 5 4 8 8 N 1.46491 * 109.47661 * 270.16543 * 7 6 5 9 9 C 1.46504 * 120.00497 * 270.00398 * 8 7 6 10 10 C 1.34780 * 119.99944 * 89.99993 * 8 7 6 11 11 O 1.21441 * 120.00045 * 356.46887 * 10 8 7 12 12 C 1.48832 * 120.00249 * 176.46383 * 10 8 7 13 13 O 1.21501 * 119.99614 * 5.93984 * 12 10 8 14 14 N 1.34771 * 120.00178 * 185.93415 * 12 10 8 15 15 C 1.36122 * 120.00308 * 179.97438 * 14 12 10 16 16 H 1.08011 * 119.99585 * 0.02562 * 15 14 12 17 17 C 1.39582 * 120.00271 * 180.02562 * 15 14 12 18 18 N 1.31011 * 120.00324 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99859 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47247 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46837 * 120.00341 * 19 17 15 22 22 H 1.48498 * 109.47227 * 239.99996 * 19 17 15 23 23 H 1.09000 * 109.47022 * 90.02504 * 1 2 3 24 24 H 1.09007 * 109.46875 * 330.02884 * 1 2 3 25 25 H 1.08997 * 109.47932 * 210.02638 * 1 2 3 26 26 H 1.07995 * 126.58146 * 359.97438 * 3 2 1 27 27 H 1.08002 * 125.78545 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47447 * 30.16897 * 7 6 5 29 29 H 1.09003 * 109.47170 * 150.16380 * 7 6 5 30 30 H 1.08998 * 109.47502 * 95.98366 * 9 8 7 31 31 H 1.08998 * 109.46858 * 215.98936 * 9 8 7 32 32 H 1.09000 * 109.46580 * 335.98509 * 9 8 7 33 33 H 0.97004 * 120.00241 * 0.02562 * 14 12 10 34 34 H 0.96994 * 120.00771 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6808 0.0006 5 8 3.5847 -0.6618 0.0004 6 6 2.3085 -1.0803 0.0048 7 6 1.8520 -2.5164 0.0111 8 7 1.7047 -2.9881 -1.3680 9 6 0.4219 -2.8396 -2.0600 10 6 2.7493 -3.5587 -2.0003 11 8 3.8300 -3.6239 -1.4502 12 6 2.5783 -4.1090 -3.3725 13 8 1.5297 -3.9487 -3.9649 14 7 3.5866 -4.7849 -3.9580 15 6 3.4301 -5.2886 -5.2128 16 1 2.4979 -5.1462 -5.7395 17 6 4.4743 -5.9891 -5.8190 18 7 5.6048 -6.1622 -5.1801 19 14 4.2591 -6.6809 -7.5408 20 1 2.8999 -6.3518 -8.0403 21 1 5.2758 -6.0849 -8.4443 22 1 4.4309 -8.1555 -7.5068 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 0.8903 0.5134 25 1 -0.3635 -0.8897 0.5142 26 1 2.0368 2.1689 -0.0004 27 1 4.5061 1.2921 0.0011 28 1 2.5898 -3.1300 0.5281 29 1 0.8935 -2.5908 0.5249 30 1 0.4376 -1.9322 -2.6636 31 1 0.2551 -3.7023 -2.7049 32 1 -0.3813 -2.7740 -1.3260 33 1 4.4237 -4.9131 -3.4849 34 1 6.3303 -6.6493 -5.6011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310465825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:37 Heat of formation + Delta-G solvation = -66.792992 kcal Electronic energy + Delta-G solvation = -20121.622884 eV Core-core repulsion = 16828.075316 eV Total energy + Delta-G solvation = -3293.547568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.54204 -41.43612 -39.17830 -37.26797 -36.06848 -34.93552 -33.46318 -31.98900 -29.54449 -28.18466 -27.33334 -26.60372 -23.94302 -22.32441 -21.18605 -20.53643 -19.93482 -18.42393 -18.06049 -17.83922 -17.17723 -16.77978 -16.70653 -15.86922 -15.73012 -15.43461 -15.04115 -14.59872 -14.27022 -14.02823 -13.78663 -13.70832 -13.58846 -13.40285 -13.18611 -12.97836 -12.89220 -12.54493 -12.35637 -12.08351 -12.04041 -11.64990 -10.52461 -10.29107 -10.05054 -9.90750 -9.31020 -8.65561 -6.10355 0.52873 0.69655 1.41182 1.45466 1.53964 1.60059 1.90409 2.15503 2.28987 2.37664 3.10213 3.14837 3.75117 3.89683 3.99416 4.04951 4.13378 4.36265 4.43037 4.64984 4.77416 4.82978 4.89749 4.98155 5.11182 5.18739 5.26243 5.31678 5.44957 5.68257 5.69520 6.00235 6.26135 6.33103 6.75008 6.95607 7.27505 7.79693 8.50614 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.004559 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.218753 B = 6140.499435 C = 6501.273310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.164 4.164 3 C -0.225 4.225 4 C -0.048 4.048 5 O -0.199 6.199 6 C -0.065 4.065 7 C 0.191 3.809 8 N -0.583 5.583 9 C 0.075 3.925 10 C 0.511 3.489 11 O -0.563 6.563 12 C 0.392 3.608 13 O -0.598 6.598 14 N -0.513 5.513 15 C -0.342 4.342 16 H 0.102 0.898 17 C -0.006 4.006 18 N -0.899 5.899 19 Si 1.011 2.989 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.266 1.266 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.173 0.827 27 H 0.229 0.771 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.398 0.602 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 10.565 10.114 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.166 4.166 3 C -0.244 4.244 4 C -0.115 4.115 5 O -0.095 6.095 6 C -0.116 4.116 7 C 0.070 3.930 8 N -0.315 5.315 9 C -0.066 4.066 10 C 0.296 3.704 11 O -0.442 6.442 12 C 0.177 3.823 13 O -0.487 6.487 14 N -0.147 5.147 15 C -0.472 4.472 16 H 0.120 0.880 17 C -0.210 4.210 18 N -0.537 5.537 19 Si 0.832 3.168 20 H -0.185 1.185 21 H -0.193 1.193 22 H -0.191 1.191 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.190 0.810 27 H 0.245 0.755 28 H 0.103 0.897 29 H 0.172 0.828 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.232 0.768 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.679 10.333 10.000 16.796 hybrid contribution 0.928 -0.070 -0.491 1.052 sum -7.751 10.263 9.509 15.995 Atomic orbital electron populations 1.20338 0.86813 1.04040 1.02797 1.20723 0.98742 0.91467 1.05679 1.22091 0.92297 1.00833 1.09141 1.24800 1.01521 0.80256 1.04950 1.84106 1.30032 1.24050 1.71326 1.22952 0.81206 0.97680 1.09720 1.20127 1.04226 0.86282 0.82391 1.47769 1.12409 1.57101 1.14237 1.22413 0.82403 1.03852 0.97926 1.20358 0.84286 0.78701 0.87081 1.90688 1.26607 1.58887 1.68035 1.19472 0.86160 0.88143 0.88480 1.90454 1.27217 1.64994 1.66051 1.41693 1.14229 1.43599 1.15185 1.20036 1.02325 1.33024 0.91807 0.88031 1.26561 0.93648 0.96052 1.04752 1.69562 1.04810 1.38788 1.40510 0.84626 0.79103 0.78056 0.75030 1.18531 1.19310 1.19050 0.91124 0.89914 0.89995 0.80987 0.75498 0.89723 0.82809 0.93612 0.89105 0.87680 0.76750 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.18 71.24 0.73 -0.65 16 2 C -0.16 -4.02 6.16 -19.94 -0.12 -4.14 16 3 C -0.22 -5.17 10.87 22.19 0.24 -4.93 16 4 C -0.05 -1.21 12.09 66.97 0.81 -0.40 16 5 O -0.20 -6.77 10.65 -2.48 -0.03 -6.80 16 6 C -0.07 -1.96 6.90 24.83 0.17 -1.78 16 7 C 0.19 5.37 5.74 85.63 0.49 5.86 16 8 N -0.58 -20.48 2.86 -853.44 -2.44 -22.91 16 9 C 0.08 2.25 9.58 127.77 1.22 3.48 16 10 C 0.51 23.42 7.71 87.08 0.67 24.09 16 11 O -0.56 -28.27 16.09 -3.53 -0.06 -28.32 16 12 C 0.39 20.36 7.70 87.08 0.67 21.03 16 13 O -0.60 -31.48 12.69 -3.72 -0.05 -31.53 16 14 N -0.51 -28.65 5.24 -308.87 -1.62 -30.27 16 15 C -0.34 -19.32 9.67 84.35 0.82 -18.50 16 16 H 0.10 5.83 7.15 -2.90 -0.02 5.81 16 17 C -0.01 -0.33 5.51 85.14 0.47 0.14 16 18 N -0.90 -49.03 13.03 21.76 0.28 -48.75 16 19 Si 1.01 40.92 29.56 68.60 2.03 42.95 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 22 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.08 1.05 7.14 -2.39 -0.02 1.03 16 26 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 27 H 0.23 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.08 2.61 7.47 -2.39 -0.02 2.59 16 29 H 0.15 2.75 6.85 -2.39 -0.02 2.74 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 3.31 5.35 -2.55 -0.01 3.29 16 32 H 0.10 2.03 7.83 -2.39 -0.02 2.01 16 33 H 0.40 22.76 7.36 -92.70 -0.68 22.08 16 34 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 Total: -1.00 -71.62 301.56 4.75 -66.87 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.46 Total: 34.57 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 6.17 Total: 24.19 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -3.77 Total: -101.94 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: -0.13 Total: -66.65 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -71.62 4.75 -66.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310465825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.077 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds