Wall clock time and date at job start Mon Mar 30 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39322 * 2 1 4 4 N 1.30503 * 108.69928 * 180.02562 * 3 2 1 5 5 C 1.34124 * 109.25583 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.99348 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46879 * 304.99636 * 6 5 4 8 8 N 1.46502 * 109.47241 * 179.97438 * 7 6 5 9 9 C 1.34778 * 120.00305 * 179.97438 * 8 7 6 10 10 O 1.21439 * 119.99398 * 0.02562 * 9 8 7 11 11 C 1.48824 * 120.00314 * 180.02562 * 9 8 7 12 12 O 1.21511 * 119.99772 * 0.02562 * 11 9 8 13 13 N 1.34770 * 120.00491 * 180.02562 * 11 9 8 14 14 C 1.36122 * 120.00435 * 180.02562 * 13 11 9 15 15 H 1.07999 * 119.99669 * 359.97438 * 14 13 11 16 16 C 1.39586 * 120.00082 * 180.02562 * 14 13 11 17 17 N 1.31014 * 119.99917 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00017 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47326 * 90.00065 * 18 16 14 20 20 H 1.48500 * 109.47264 * 210.00424 * 18 16 14 21 21 H 1.48502 * 109.47287 * 330.00049 * 18 16 14 22 22 C 1.34675 * 108.02139 * 359.97438 * 5 4 3 23 23 H 1.09006 * 109.47289 * 269.95547 * 1 2 3 24 24 H 1.08996 * 109.47327 * 29.95915 * 1 2 3 25 25 H 1.09002 * 109.46825 * 149.95962 * 1 2 3 26 26 H 1.07997 * 125.65385 * 0.05440 * 3 2 1 27 27 H 1.09002 * 109.47034 * 64.99474 * 6 5 4 28 28 H 1.08993 * 109.47516 * 184.99697 * 6 5 4 29 29 H 1.08997 * 109.47603 * 299.99749 * 7 6 5 30 30 H 1.09007 * 109.47118 * 59.99845 * 7 6 5 31 31 H 0.97002 * 119.99473 * 0.02562 * 8 7 6 32 32 H 0.97002 * 120.00045 * 0.02562 * 13 11 9 33 33 H 0.97003 * 119.99415 * 179.97438 * 17 16 14 34 34 H 1.07999 * 126.59056 * 179.74167 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5461 -0.6504 -0.0015 6 6 4.7890 -1.5024 -0.0018 7 6 5.6777 -1.1075 -1.1830 8 7 6.8863 -1.9354 -1.1831 9 6 7.8207 -1.7639 -2.1392 10 8 7.6608 -0.9227 -3.0003 11 6 9.0482 -2.6053 -2.1395 12 8 9.2079 -3.4473 -1.2781 13 7 9.9828 -2.4335 -3.0952 14 6 11.1053 -3.2035 -3.0959 15 1 11.2472 -3.9518 -2.3302 16 6 12.0735 -3.0251 -4.0854 17 7 13.1537 -3.7665 -4.0863 18 14 11.8283 -1.7302 -5.4093 19 1 12.4114 -0.4420 -4.9558 20 1 12.5022 -2.1660 -6.6588 21 1 10.3764 -1.5533 -5.6659 22 6 2.2772 -1.1017 -0.0009 23 1 -0.3634 -0.0008 1.0277 24 1 -0.3634 0.8903 -0.5132 25 1 -0.3633 -0.8897 -0.5145 26 1 1.9333 2.1144 0.0008 27 1 5.3341 -1.3502 0.9298 28 1 4.5100 -2.5522 -0.0921 29 1 5.1327 -1.2597 -2.1146 30 1 5.9568 -0.0577 -1.0927 31 1 7.0138 -2.6076 -0.4954 32 1 9.8556 -1.7611 -3.7827 33 1 13.8262 -3.6427 -4.7743 34 1 1.9613 -2.1345 -0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313462751.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:04 Heat of formation + Delta-G solvation = -6.872477 kcal Electronic energy + Delta-G solvation = -18873.832637 eV Core-core repulsion = 15615.176168 eV Total energy + Delta-G solvation = -3258.656469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.29719 -39.53025 -37.36657 -35.58410 -34.43102 -33.86531 -31.88802 -31.40455 -28.92473 -27.04034 -25.86438 -23.79830 -21.89739 -21.35895 -20.36872 -19.33936 -18.87328 -17.28961 -16.80577 -16.04514 -15.89141 -15.41470 -15.04757 -14.69502 -14.43303 -14.34415 -13.74819 -13.44539 -13.26978 -13.21008 -12.81837 -12.69390 -12.57167 -12.32548 -11.82912 -11.38218 -11.21741 -10.67363 -10.49511 -10.11669 -10.03888 -9.80949 -9.71256 -8.72072 -8.61590 -8.35927 -8.33795 -6.53308 -3.94770 1.77820 2.39424 2.48723 2.88523 3.09592 3.12818 3.15871 3.43699 4.01160 4.23470 4.26396 4.35053 4.58813 4.62980 4.82678 4.88564 5.00256 5.09449 5.17520 5.21836 5.52750 5.60211 5.75239 5.93408 6.08567 6.19502 6.47788 6.77944 6.91423 7.32379 7.75708 7.87486 7.98637 8.32669 8.59558 8.81591 9.25599 9.67981 10.56911 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.049160 B = 0.003100 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.436582 B = 9029.767540 C = 9407.996033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.467 5.467 3 C 0.181 3.819 4 N -0.484 5.484 5 C 0.010 3.990 6 C -0.045 4.045 7 C 0.129 3.871 8 N -0.713 5.713 9 C 0.513 3.487 10 O -0.550 6.550 11 C 0.407 3.593 12 O -0.579 6.579 13 N -0.529 5.529 14 C -0.308 4.308 15 H 0.127 0.873 16 C 0.052 3.948 17 N -0.852 5.852 18 Si 0.876 3.124 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.259 1.259 22 C -0.053 4.053 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.205 0.795 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.410 0.590 32 H 0.384 0.616 33 H 0.281 0.719 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.218 7.289 6.804 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.150 5.150 3 C -0.101 4.101 4 N -0.202 5.202 5 C -0.120 4.120 6 C -0.084 4.084 7 C 0.005 3.995 8 N -0.367 5.367 9 C 0.297 3.703 10 O -0.427 6.427 11 C 0.191 3.809 12 O -0.465 6.465 13 N -0.166 5.166 14 C -0.438 4.438 15 H 0.145 0.855 16 C -0.156 4.156 17 N -0.489 5.489 18 Si 0.700 3.300 19 H -0.189 1.189 20 H -0.196 1.196 21 H -0.184 1.184 22 C -0.186 4.186 23 H 0.094 0.906 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.221 0.779 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.246 0.754 32 H 0.219 0.781 33 H 0.091 0.909 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.508 7.801 6.647 26.565 hybrid contribution -0.889 0.170 -0.754 1.178 sum -25.398 7.971 5.893 27.264 Atomic orbital electron populations 1.22036 0.76606 1.04734 1.03540 1.45410 1.07640 1.07106 1.54874 1.25013 0.85414 0.93642 1.06035 1.70186 1.19367 1.11528 1.19149 1.20419 0.93565 0.90635 1.07355 1.20026 0.91573 0.97500 0.99271 1.21213 0.84656 0.95788 0.97822 1.45666 1.20061 1.39978 1.30966 1.20580 0.84802 0.83666 0.81237 1.90680 1.78984 1.35586 1.37487 1.18875 0.85766 0.89323 0.86910 1.90616 1.79028 1.37831 1.39071 1.41826 1.17666 1.32595 1.24500 1.19556 0.93899 1.16463 1.13868 0.85519 1.25226 0.95088 0.97482 0.97813 1.69446 1.08138 1.37339 1.33965 0.86677 0.79686 0.81909 0.81695 1.18902 1.19611 1.18403 1.22489 0.90707 0.92677 1.12707 0.90553 0.89416 0.89644 0.77881 0.89836 0.89936 0.91803 0.90664 0.75398 0.78144 0.90856 0.80801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 11.18 59.85 0.67 0.89 16 2 N -0.47 -3.54 3.15 -125.99 -0.40 -3.94 16 3 C 0.18 1.67 12.56 -90.37 -1.14 0.54 16 4 N -0.48 -6.26 11.23 -10.88 -0.12 -6.38 16 5 C 0.01 0.11 6.36 -82.85 -0.53 -0.41 16 6 C -0.04 -0.51 5.89 -27.88 -0.16 -0.67 16 7 C 0.13 1.91 5.64 -4.04 -0.02 1.89 16 8 N -0.71 -12.29 5.55 -60.93 -0.34 -12.62 16 9 C 0.51 11.15 7.87 -11.88 -0.09 11.06 16 10 O -0.55 -12.86 16.47 5.42 0.09 -12.77 16 11 C 0.41 10.18 7.82 -11.88 -0.09 10.09 16 12 O -0.58 -15.61 16.03 5.36 0.09 -15.53 16 13 N -0.53 -13.78 5.06 -11.59 -0.06 -13.84 16 14 C -0.31 -8.80 10.16 -15.15 -0.15 -8.96 16 15 H 0.13 4.01 7.36 -52.49 -0.39 3.62 16 16 C 0.05 1.41 5.51 -17.40 -0.10 1.32 16 17 N -0.85 -24.11 13.94 55.53 0.77 -23.33 16 18 Si 0.88 19.86 27.74 -169.99 -4.72 15.15 16 19 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.26 -5.73 6.53 56.52 0.37 -5.36 16 22 C -0.05 -0.48 11.46 -16.56 -0.19 -0.67 16 23 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 25 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.41 6.47 7.93 -40.82 -0.32 6.15 16 32 H 0.38 9.45 5.22 -40.82 -0.21 9.23 16 33 H 0.28 7.25 8.30 -40.82 -0.34 6.92 16 34 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -35.57 306.25 -5.77 -41.34 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -3.89 Total: 12.25 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: -1.81 Total: 15.07 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.14 Total: -60.12 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: 0.18 Total: -28.30 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.72 Total: 15.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.57 -5.77 -41.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313462751.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.464 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds