Wall clock time and date at job start Mon Mar 30 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39322 * 2 1 4 4 N 1.30503 * 108.69928 * 180.02562 * 3 2 1 5 5 C 1.34124 * 109.25583 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.99348 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46879 * 304.99636 * 6 5 4 8 8 N 1.46502 * 109.47241 * 179.97438 * 7 6 5 9 9 C 1.34778 * 120.00305 * 179.97438 * 8 7 6 10 10 O 1.21439 * 119.99398 * 0.02562 * 9 8 7 11 11 C 1.48824 * 120.00314 * 180.02562 * 9 8 7 12 12 O 1.21511 * 119.99772 * 0.02562 * 11 9 8 13 13 N 1.34770 * 120.00491 * 180.02562 * 11 9 8 14 14 C 1.36122 * 120.00435 * 180.02562 * 13 11 9 15 15 H 1.07999 * 119.99669 * 359.97438 * 14 13 11 16 16 C 1.39586 * 120.00082 * 180.02562 * 14 13 11 17 17 N 1.31014 * 119.99917 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00017 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47326 * 90.00065 * 18 16 14 20 20 H 1.48500 * 109.47264 * 210.00424 * 18 16 14 21 21 H 1.48502 * 109.47287 * 330.00049 * 18 16 14 22 22 C 1.34675 * 108.02139 * 359.97438 * 5 4 3 23 23 H 1.09006 * 109.47289 * 269.95547 * 1 2 3 24 24 H 1.08996 * 109.47327 * 29.95915 * 1 2 3 25 25 H 1.09002 * 109.46825 * 149.95962 * 1 2 3 26 26 H 1.07997 * 125.65385 * 0.05440 * 3 2 1 27 27 H 1.09002 * 109.47034 * 64.99474 * 6 5 4 28 28 H 1.08993 * 109.47516 * 184.99697 * 6 5 4 29 29 H 1.08997 * 109.47603 * 299.99749 * 7 6 5 30 30 H 1.09007 * 109.47118 * 59.99845 * 7 6 5 31 31 H 0.97002 * 119.99473 * 0.02562 * 8 7 6 32 32 H 0.97002 * 120.00045 * 0.02562 * 13 11 9 33 33 H 0.97003 * 119.99415 * 179.97438 * 17 16 14 34 34 H 1.07999 * 126.59056 * 179.74167 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5461 -0.6504 -0.0015 6 6 4.7890 -1.5024 -0.0018 7 6 5.6777 -1.1075 -1.1830 8 7 6.8863 -1.9354 -1.1831 9 6 7.8207 -1.7639 -2.1392 10 8 7.6608 -0.9227 -3.0003 11 6 9.0482 -2.6053 -2.1395 12 8 9.2079 -3.4473 -1.2781 13 7 9.9828 -2.4335 -3.0952 14 6 11.1053 -3.2035 -3.0959 15 1 11.2472 -3.9518 -2.3302 16 6 12.0735 -3.0251 -4.0854 17 7 13.1537 -3.7665 -4.0863 18 14 11.8283 -1.7302 -5.4093 19 1 12.4114 -0.4420 -4.9558 20 1 12.5022 -2.1660 -6.6588 21 1 10.3764 -1.5533 -5.6659 22 6 2.2772 -1.1017 -0.0009 23 1 -0.3634 -0.0008 1.0277 24 1 -0.3634 0.8903 -0.5132 25 1 -0.3633 -0.8897 -0.5145 26 1 1.9333 2.1144 0.0008 27 1 5.3341 -1.3502 0.9298 28 1 4.5100 -2.5522 -0.0921 29 1 5.1327 -1.2597 -2.1146 30 1 5.9568 -0.0577 -1.0927 31 1 7.0138 -2.6076 -0.4954 32 1 9.8556 -1.7611 -3.7827 33 1 13.8262 -3.6427 -4.7743 34 1 1.9613 -2.1345 -0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313462751.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:03 Heat of formation + Delta-G solvation = -33.933879 kcal Electronic energy + Delta-G solvation = -18875.006107 eV Core-core repulsion = 15615.176168 eV Total energy + Delta-G solvation = -3259.829939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.94813 -41.37305 -39.28398 -36.95905 -36.18320 -34.91641 -33.94674 -32.48705 -29.73801 -28.14085 -27.31330 -25.18968 -23.39598 -22.04819 -21.49255 -21.17136 -20.55264 -18.72155 -17.97217 -17.57546 -16.94604 -16.85933 -16.56912 -16.10716 -15.76119 -15.34715 -15.05098 -14.82538 -14.71319 -14.40541 -14.26779 -13.77235 -13.64789 -13.32107 -13.08940 -12.83675 -12.55294 -12.49937 -12.43144 -11.98540 -11.70859 -10.86517 -10.47168 -10.45950 -10.33707 -10.22150 -9.29679 -8.62071 -6.15744 0.52719 1.14129 1.29459 1.33678 1.39523 1.71642 2.04358 2.10771 2.17715 2.29443 3.06847 3.09554 3.68806 3.82817 3.91673 4.10550 4.15071 4.21299 4.35965 4.49167 4.63454 4.73011 4.76707 5.00033 5.11078 5.26436 5.28889 5.36181 5.74407 5.79569 6.09664 6.35609 6.39480 6.59785 6.94078 7.15192 7.19283 7.62388 8.52404 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.049160 B = 0.003100 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.436582 B = 9029.767540 C = 9407.996033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.463 5.463 3 C 0.177 3.823 4 N -0.537 5.537 5 C -0.029 4.029 6 C -0.034 4.034 7 C 0.135 3.865 8 N -0.690 5.690 9 C 0.520 3.480 10 O -0.565 6.565 11 C 0.409 3.591 12 O -0.601 6.601 13 N -0.533 5.533 14 C -0.339 4.339 15 H 0.080 0.920 16 C 0.011 3.989 17 N -0.891 5.891 18 Si 0.947 3.053 19 H -0.253 1.253 20 H -0.255 1.255 21 H -0.249 1.249 22 C -0.043 4.043 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.233 0.767 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.419 0.581 32 H 0.392 0.608 33 H 0.291 0.709 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.989 8.444 6.285 29.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.145 5.145 3 C -0.106 4.106 4 N -0.256 5.256 5 C -0.158 4.158 6 C -0.073 4.073 7 C 0.012 3.988 8 N -0.343 5.343 9 C 0.302 3.698 10 O -0.444 6.444 11 C 0.193 3.807 12 O -0.489 6.489 13 N -0.171 5.171 14 C -0.468 4.468 15 H 0.098 0.902 16 C -0.194 4.194 17 N -0.529 5.529 18 Si 0.767 3.233 19 H -0.177 1.177 20 H -0.179 1.179 21 H -0.174 1.174 22 C -0.177 4.177 23 H 0.108 0.892 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.249 0.751 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.257 0.743 32 H 0.229 0.771 33 H 0.101 0.899 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -27.319 8.939 6.163 29.397 hybrid contribution -0.176 -0.222 -0.449 0.531 sum -27.494 8.718 5.714 29.404 Atomic orbital electron populations 1.22369 0.73746 1.06348 1.04933 1.45692 1.09318 1.06210 1.53303 1.25557 0.84886 0.95202 1.04978 1.70104 1.21784 1.12548 1.21164 1.20533 0.94541 0.90627 1.10082 1.19941 0.91114 0.98939 0.97258 1.21319 0.83656 0.94273 0.99585 1.45644 1.19639 1.39576 1.29393 1.19925 0.84436 0.83162 0.82235 1.90677 1.79192 1.36100 1.38429 1.19592 0.86422 0.88827 0.85827 1.90596 1.79775 1.38766 1.39721 1.41709 1.17351 1.32792 1.25242 1.19188 0.96069 1.17273 1.14286 0.90243 1.26066 0.94064 0.99522 0.99724 1.69546 1.09076 1.38946 1.35284 0.85602 0.80315 0.78845 0.78543 1.17673 1.17909 1.17358 1.22890 0.90075 0.94163 1.10618 0.89217 0.87621 0.88344 0.75082 0.89959 0.87496 0.92019 0.92469 0.74349 0.77142 0.89906 0.78082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.17 11.18 127.77 1.43 1.60 16 2 N -0.46 -5.79 3.15 -552.53 -1.74 -7.53 16 3 C 0.18 2.94 12.56 180.26 2.26 5.21 16 4 N -0.54 -13.47 11.23 -188.32 -2.12 -15.59 16 5 C -0.03 -0.64 6.36 41.39 0.26 -0.38 16 6 C -0.03 -0.72 5.89 29.85 0.18 -0.54 16 7 C 0.13 3.87 5.64 86.38 0.49 4.36 16 8 N -0.69 -23.13 5.55 -465.00 -2.58 -25.71 16 9 C 0.52 22.33 7.87 87.08 0.69 23.01 16 10 O -0.56 -25.91 16.47 -3.52 -0.06 -25.96 16 11 C 0.41 20.67 7.82 87.08 0.68 21.35 16 12 O -0.60 -33.11 16.03 -3.75 -0.06 -33.17 16 13 N -0.53 -28.09 5.06 -308.88 -1.56 -29.65 16 14 C -0.34 -20.00 10.16 84.35 0.86 -19.15 16 15 H 0.08 5.34 7.36 -2.91 -0.02 5.32 16 16 C 0.01 0.62 5.51 85.14 0.47 1.09 16 17 N -0.89 -51.38 13.94 21.77 0.30 -51.08 16 18 Si 0.95 40.41 27.74 68.60 1.90 42.31 16 19 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.25 -10.18 6.53 99.48 0.65 -9.53 16 22 C -0.04 -0.67 11.46 83.09 0.95 0.28 16 23 H 0.09 0.04 8.14 -2.38 -0.02 0.02 16 24 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 26 H 0.23 2.03 8.06 -2.91 -0.02 2.00 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.11 1.70 8.11 -2.39 -0.02 1.68 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.42 12.75 7.93 -92.71 -0.74 12.02 16 32 H 0.39 19.09 5.22 -92.71 -0.48 18.61 16 33 H 0.29 15.08 8.30 -92.71 -0.77 14.31 16 34 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -79.38 306.25 2.22 -77.15 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.13 Total: 32.41 kcal Atomic # 6 Polarization: 28.55 SS G_CDS: 8.26 Total: 36.82 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -7.70 Total: -129.55 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -0.12 Total: -59.13 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.90 Total: 42.31 kcal Total: -79.38 2.22 -77.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313462751.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.218 kcal (2) G-P(sol) polarization free energy of solvation -79.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds