Wall clock time and date at job start Mon Mar 30 2020 05:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86802 * 119.99596 * 2 1 4 4 H 1.48506 * 109.47083 * 239.99529 * 3 2 1 5 5 H 1.48493 * 109.47491 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47106 * 119.99990 * 3 2 1 7 7 C 1.39586 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00315 * 180.02562 * 7 2 1 9 9 N 1.36117 * 119.99556 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00144 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99436 * 359.97438 * 10 9 7 12 12 C 1.48821 * 120.00342 * 179.97438 * 10 9 7 13 13 O 1.21442 * 120.00181 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00355 * 179.97438 * 12 10 9 15 15 C 1.46501 * 120.00585 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47381 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47092 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47192 * 179.97438 * 17 16 15 19 19 C 1.39874 * 126.04031 * 269.99886 * 18 17 16 20 20 N 1.30836 * 108.20052 * 179.73886 * 19 18 17 21 21 N 1.40084 * 108.20904 * 0.40640 * 20 19 18 22 22 H 0.97001 * 126.04219 * 179.85882 * 21 20 19 23 23 C 1.34947 * 107.92164 * 359.58781 * 21 20 19 24 24 H 0.96993 * 120.00512 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00251 * 359.97438 * 9 7 2 26 26 H 0.97000 * 119.99592 * 0.02562 * 14 12 10 27 27 H 1.08997 * 109.46697 * 60.00026 * 15 14 12 28 28 H 1.09002 * 109.46902 * 300.00552 * 15 14 12 29 29 H 1.08994 * 109.47227 * 59.99405 * 16 15 14 30 30 H 1.09004 * 109.46607 * 299.99719 * 16 15 14 31 31 H 1.09007 * 109.47384 * 59.99836 * 17 16 15 32 32 H 1.09002 * 109.46954 * 299.99853 * 17 16 15 33 33 H 1.08001 * 125.89534 * 0.02562 * 19 18 17 34 34 H 1.08006 * 126.12506 * 180.22115 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 3.0979 1.6965 -1.2125 5 1 1.2791 2.7465 -0.0006 6 1 3.0977 1.6965 1.2125 7 6 2.0082 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0010 9 7 1.3276 -2.3876 0.0005 10 6 2.0015 -3.5548 0.0016 11 8 3.2165 -3.5547 0.0021 12 6 1.2574 -4.8437 0.0022 13 8 0.0430 -4.8438 0.0022 14 7 1.9313 -6.0109 0.0027 15 6 1.1989 -7.2797 0.0038 16 6 2.1932 -8.4426 0.0049 17 6 1.4282 -9.7676 0.0054 18 6 2.4075 -10.9130 0.0058 19 6 2.9423 -11.5390 -1.1250 20 7 3.7559 -12.4817 -0.7239 21 7 3.7576 -12.4917 0.6769 22 1 4.2700 -13.0902 1.2428 23 6 2.9250 -11.5177 1.1001 24 1 -0.4850 0.8399 -0.0004 25 1 0.3576 -2.3877 0.0005 26 1 2.9013 -6.0109 0.0031 27 1 0.5719 -7.3380 -0.8859 28 1 0.5725 -7.3368 0.8941 29 1 2.8199 -8.3840 0.8947 30 1 2.8198 -8.3856 -0.8853 31 1 0.8018 -9.8260 -0.8848 32 1 0.8013 -9.8248 0.8952 33 1 2.7249 -11.2846 -2.1519 34 1 2.7099 -11.2661 2.1282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314822296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:14 Heat of formation + Delta-G solvation = -38.299461 kcal Electronic energy + Delta-G solvation = -18649.613961 eV Core-core repulsion = 15389.594716 eV Total energy + Delta-G solvation = -3260.019245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.02838 -41.22715 -39.15333 -37.03463 -36.21438 -34.39826 -33.40748 -32.21053 -30.65541 -28.03143 -26.64920 -24.31821 -22.92373 -22.59969 -21.22752 -20.71361 -20.30587 -18.74787 -18.57570 -17.57363 -16.87337 -16.74468 -16.01060 -15.86449 -15.72067 -15.47911 -15.29270 -14.68477 -14.56410 -13.95561 -13.84961 -13.65440 -13.19524 -13.00120 -12.92615 -12.57212 -12.34299 -12.23421 -12.10882 -11.75642 -11.64102 -11.34876 -10.56343 -10.26280 -10.22552 -10.13203 -9.35567 -8.64233 -6.09321 0.63958 1.03710 1.42260 1.50515 1.55081 1.79612 1.97449 2.13972 2.32307 2.40481 3.17427 3.34598 3.83193 4.04298 4.07035 4.15000 4.23688 4.46893 4.57686 4.72140 4.81445 4.90006 5.03915 5.06916 5.26433 5.35635 5.45221 5.48856 5.70025 5.77665 6.20324 6.42708 6.50156 6.76748 6.84105 7.06029 7.30628 7.82222 8.51423 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.056272 B = 0.002720 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.461364 B =10291.035501 C =10582.581898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.010 2.990 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.512 5.512 10 C 0.389 3.611 11 O -0.618 6.618 12 C 0.517 3.483 13 O -0.567 6.567 14 N -0.694 5.694 15 C 0.115 3.885 16 C -0.113 4.113 17 C -0.029 4.029 18 C -0.250 4.250 19 C 0.045 3.955 20 N -0.339 5.339 21 N -0.477 5.477 22 H 0.450 0.550 23 C 0.068 3.932 24 H 0.289 0.711 25 H 0.401 0.599 26 H 0.415 0.585 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.194 0.806 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -20.211 2.620 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.116 0.884 9 N -0.146 5.146 10 C 0.174 3.826 11 O -0.508 6.508 12 C 0.300 3.700 13 O -0.447 6.447 14 N -0.347 5.347 15 C -0.007 4.007 16 C -0.151 4.151 17 C -0.068 4.068 18 C -0.262 4.262 19 C -0.141 4.141 20 N -0.162 5.162 21 N -0.186 5.186 22 H 0.296 0.704 23 C -0.080 4.080 24 H 0.099 0.901 25 H 0.235 0.765 26 H 0.252 0.748 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.211 0.789 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.610 -21.040 2.247 21.465 hybrid contribution -0.115 1.098 0.433 1.186 sum 3.494 -19.942 2.680 20.422 Atomic orbital electron populations 1.69539 1.07812 1.30868 1.45184 1.26539 0.96509 1.03475 0.94411 0.84756 0.77747 0.74805 0.79637 1.18884 1.19121 1.18830 1.19939 0.93681 0.83125 1.50877 0.88353 1.41660 1.10248 1.04822 1.57859 1.19699 0.87891 0.85366 0.89664 1.90544 1.13876 1.87357 1.59010 1.20033 0.87002 0.86008 0.76999 1.90679 1.14550 1.88349 1.51098 1.45700 1.11563 1.04716 1.72702 1.21659 0.95433 0.81073 1.02575 1.21727 0.97553 0.92382 1.03423 1.19706 0.94845 0.88342 1.03942 1.20272 1.08857 1.05132 0.91935 1.24222 0.94923 0.93725 1.01250 1.77271 1.24289 1.24159 0.90511 1.46374 1.37397 1.29617 1.05198 0.70450 1.22993 0.93021 0.90550 1.01426 0.90096 0.76458 0.74805 0.91426 0.91153 0.90711 0.91206 0.90290 0.89750 0.78880 0.77506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.27 13.03 21.76 0.28 -47.99 16 2 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 3 Si 1.01 40.74 29.56 68.60 2.03 42.77 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.35 -19.55 9.67 84.35 0.82 -18.73 16 8 H 0.10 5.68 7.15 -2.91 -0.02 5.66 16 9 N -0.51 -28.21 5.25 -308.88 -1.62 -29.83 16 10 C 0.39 19.95 7.82 87.08 0.68 20.63 16 11 O -0.62 -33.57 16.03 -3.74 -0.06 -33.63 16 12 C 0.52 22.35 7.87 87.08 0.68 23.03 16 13 O -0.57 -26.52 16.47 -3.53 -0.06 -26.58 16 14 N -0.69 -22.46 5.55 -465.02 -2.58 -25.04 16 15 C 0.11 2.72 5.67 86.38 0.49 3.21 16 16 C -0.11 -1.85 5.31 30.59 0.16 -1.68 16 17 C -0.03 -0.38 5.70 29.85 0.17 -0.21 16 18 C -0.25 -3.68 5.35 -20.14 -0.11 -3.79 16 19 C 0.04 0.78 11.96 85.24 1.02 1.80 16 20 N -0.34 -6.76 12.70 -57.02 -0.72 -7.48 16 21 N -0.48 -6.42 7.36 -57.59 -0.42 -6.84 16 22 H 0.45 3.27 8.96 -213.33 -1.91 1.36 16 23 C 0.07 0.79 11.90 83.54 0.99 1.79 16 24 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 25 H 0.40 22.30 7.35 -92.71 -0.68 21.62 16 26 H 0.42 12.64 7.93 -92.71 -0.74 11.90 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.19 2.58 8.06 -2.91 -0.02 2.55 16 34 H 0.21 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -72.30 308.69 0.06 -72.24 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -2.16 Total: 36.15 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 5.38 Total: 26.24 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -5.06 Total: -117.19 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -0.12 Total: -60.21 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -72.30 0.06 -72.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314822296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.940 kcal (2) G-P(sol) polarization free energy of solvation -72.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds