Wall clock time and date at job start Mon Mar 30 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99830 * 2 1 4 4 C 1.52999 * 109.47038 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47006 * 65.00446 * 4 3 2 6 6 C 1.36835 * 120.00072 * 55.00629 * 5 4 3 7 7 H 1.08000 * 119.99857 * 316.64792 * 6 5 4 8 8 C 1.39070 * 120.00184 * 136.92520 * 6 5 4 9 9 N 1.31354 * 120.00083 * 344.97192 * 8 6 5 10 10 Si 1.86801 * 120.00122 * 164.96867 * 8 6 5 11 11 H 1.48501 * 109.46870 * 65.00560 * 10 8 6 12 12 H 1.48499 * 109.47046 * 185.00090 * 10 8 6 13 13 H 1.48497 * 109.47361 * 304.99924 * 10 8 6 14 14 C 1.34771 * 120.00100 * 235.00861 * 5 4 3 15 15 O 1.21600 * 120.00232 * 173.00376 * 14 5 4 16 16 C 1.47710 * 120.00089 * 353.00402 * 14 5 4 17 17 C 1.40030 * 120.96328 * 44.00511 * 16 14 5 18 18 C 1.37930 * 119.05690 * 179.97438 * 17 16 14 19 19 N 1.31932 * 121.08276 * 359.97438 * 18 17 16 20 20 C 1.31655 * 122.15922 * 0.02562 * 19 18 17 21 21 C 1.38901 * 120.80111 * 359.73591 * 20 19 18 22 22 O 1.35678 * 120.58295 * 180.29010 * 21 20 19 23 23 H 1.08993 * 109.46824 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46388 * 299.99199 * 1 2 3 25 25 H 1.08989 * 109.47320 * 59.99836 * 1 2 3 26 26 H 1.08997 * 109.46761 * 60.00470 * 3 2 1 27 27 H 1.08998 * 109.47218 * 300.00393 * 3 2 1 28 28 H 1.09001 * 109.47566 * 305.00236 * 4 3 2 29 29 H 1.09000 * 109.47467 * 184.99753 * 4 3 2 30 30 H 0.96995 * 120.00038 * 185.03221 * 9 8 6 31 31 H 1.07993 * 120.47112 * 359.94962 * 17 16 14 32 32 H 1.08006 * 119.46250 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.59840 * 180.02562 * 20 19 18 34 34 H 0.96694 * 113.99526 * 270.22785 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 3.6041 1.1074 -2.4527 7 1 2.5884 1.4424 -2.6025 8 6 4.5330 1.2224 -3.4813 9 7 5.8151 1.0938 -3.2259 10 14 3.9576 1.5596 -5.2262 11 1 3.3261 2.9022 -5.2883 12 1 5.1210 1.5167 -6.1481 13 1 2.9684 0.5280 -5.6293 14 6 4.7465 -0.5405 -1.2229 15 8 5.0065 -1.1285 -2.2551 16 6 5.2754 -1.0375 0.0635 17 6 4.4608 -1.1021 1.2007 18 6 4.9953 -1.5732 2.3817 19 7 6.2543 -1.9612 2.4527 20 6 7.0600 -1.9198 1.4123 21 6 6.6080 -1.4646 0.1803 22 8 7.4406 -1.4293 -0.8904 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 3.8515 0.5683 0.8409 29 1 3.9786 2.1766 0.0889 30 1 6.4671 1.2460 -3.9277 31 1 3.4289 -0.7871 1.1538 32 1 4.3730 -1.6254 3.2629 33 1 8.0836 -2.2481 1.5169 34 1 7.9262 -0.5984 -0.9838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317007726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:46 Heat of formation + Delta-G solvation = -49.020566 kcal Electronic energy + Delta-G solvation = -21010.167760 eV Core-core repulsion = 17717.390862 eV Total energy + Delta-G solvation = -3292.776898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18575 -38.19371 -37.14176 -36.59726 -34.16667 -32.62460 -31.23547 -29.71678 -28.84426 -25.95767 -25.46870 -23.70914 -22.78068 -21.72417 -19.91863 -17.81805 -17.31670 -16.48020 -16.19600 -15.96038 -15.39230 -15.00595 -14.79630 -14.55087 -14.10972 -13.81421 -13.73605 -13.09111 -12.93555 -12.37889 -12.36506 -11.84984 -11.54556 -11.37000 -11.15850 -10.86956 -10.79401 -10.71898 -10.33897 -10.26888 -9.30635 -9.15309 -9.01097 -8.77886 -8.43737 -8.05069 -7.14454 -6.19047 -3.90380 1.39710 1.43199 3.25904 3.34649 3.38007 3.90776 4.13306 4.22934 4.46255 4.63268 4.77535 4.87984 5.17916 5.33070 5.43257 5.47830 5.49259 5.58883 5.75346 5.80526 5.86929 5.87771 5.94758 6.07603 6.26310 6.41217 6.47693 6.58563 6.91008 7.53498 7.58173 8.10984 8.21301 8.28322 8.98907 9.13645 9.57570 10.25573 10.91070 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.009571 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.525787 B = 2924.932188 C = 4388.681699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.051 3.949 4 C 0.075 3.925 5 N -0.436 5.436 6 C -0.339 4.339 7 H 0.078 0.922 8 C 0.067 3.933 9 N -0.834 5.834 10 Si 0.917 3.083 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.518 3.482 15 O -0.514 6.514 16 C -0.080 4.080 17 C -0.147 4.147 18 C 0.070 3.930 19 N -0.474 5.474 20 C 0.063 3.937 21 C 0.099 3.901 22 O -0.472 6.472 23 H 0.079 0.921 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.266 0.734 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 1.183 9.783 10.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C -0.026 4.026 4 C -0.049 4.049 5 N -0.159 5.159 6 C -0.466 4.466 7 H 0.096 0.904 8 C -0.144 4.144 9 N -0.467 5.467 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.305 3.695 15 O -0.390 6.390 16 C -0.092 4.092 17 C -0.167 4.167 18 C -0.086 4.086 19 N -0.185 5.185 20 C -0.096 4.096 21 C 0.050 3.950 22 O -0.280 6.280 23 H 0.098 0.902 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.216 -0.204 9.775 10.292 hybrid contribution -0.608 1.370 -1.597 2.190 sum -3.824 1.166 8.178 9.103 Atomic orbital electron populations 1.22646 0.82185 1.02090 0.99322 1.87924 1.18676 1.28216 1.95236 1.22943 0.95131 0.84668 0.99894 1.22248 0.91970 0.99666 0.90968 1.42895 1.47002 1.21934 1.04023 1.18876 0.95542 1.43107 0.89047 0.90433 1.25279 0.94583 0.94684 0.99828 1.69725 1.00619 1.42434 1.33971 0.86192 0.78313 0.78166 0.82876 1.20478 1.21061 1.19856 1.17444 0.84023 0.81762 0.86276 1.90647 1.58882 1.56337 1.33138 1.21630 0.94337 0.96997 0.96256 1.22686 1.02155 0.99333 0.92509 1.22555 0.91839 0.96725 0.97491 1.67443 1.05086 1.14662 1.31270 1.23033 0.99989 0.99214 0.87368 1.19651 0.89719 0.97995 0.87594 1.84774 1.57896 1.40810 1.44545 0.90245 0.94836 0.94352 0.93846 0.92157 0.89024 0.91512 0.92376 0.82510 0.82765 0.82593 0.75011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.38 -6.70 9.68 -35.23 -0.34 -7.04 16 3 C 0.05 0.85 5.92 37.16 0.22 1.07 16 4 C 0.08 1.45 5.65 -4.04 -0.02 1.43 16 5 N -0.44 -10.82 2.67 -115.93 -0.31 -11.13 16 6 C -0.34 -9.11 8.69 -15.01 -0.13 -9.24 16 7 H 0.08 2.00 6.65 -52.49 -0.35 1.66 16 8 C 0.07 1.84 4.50 -17.45 -0.08 1.76 16 9 N -0.83 -23.82 11.61 55.50 0.64 -23.18 16 10 Si 0.92 21.69 29.58 -169.99 -5.03 16.66 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.52 13.59 6.23 -12.39 -0.08 13.52 16 15 O -0.51 -15.80 14.35 -5.81 -0.08 -15.88 16 16 C -0.08 -1.73 5.40 -104.53 -0.56 -2.30 16 17 C -0.15 -2.60 7.57 -39.02 -0.30 -2.89 16 18 C 0.07 1.07 11.16 -17.62 -0.20 0.88 16 19 N -0.47 -7.88 10.33 -13.18 -0.14 -8.01 16 20 C 0.06 1.05 11.14 -17.38 -0.19 0.86 16 21 C 0.10 1.98 6.73 -38.51 -0.26 1.72 16 22 O -0.47 -9.76 12.55 -29.82 -0.37 -10.13 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.50 8.14 -51.94 -0.42 0.08 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.08 6.68 -51.93 -0.35 0.73 16 28 H 0.09 1.61 3.09 -51.97 -0.16 1.45 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.16 2.66 5.14 -52.49 -0.27 2.39 16 32 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.16 2.17 8.06 -52.49 -0.42 1.74 16 34 H 0.39 6.80 9.06 45.56 0.41 7.21 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -34.74 291.84 -4.52 -39.27 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.81 Total: 6.67 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.49 Total: 8.38 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.20 Total: -42.32 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.80 Total: -33.06 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.74 -4.52 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317007726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.753 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds