Wall clock time and date at job start Mon Mar 30 2020 04:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99830 * 2 1 4 4 C 1.52999 * 109.47038 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47006 * 65.00446 * 4 3 2 6 6 C 1.36835 * 120.00072 * 55.00629 * 5 4 3 7 7 H 1.08000 * 119.99857 * 316.64792 * 6 5 4 8 8 C 1.39070 * 120.00184 * 136.92520 * 6 5 4 9 9 N 1.31354 * 120.00083 * 344.97192 * 8 6 5 10 10 Si 1.86801 * 120.00122 * 164.96867 * 8 6 5 11 11 H 1.48501 * 109.46870 * 65.00560 * 10 8 6 12 12 H 1.48499 * 109.47046 * 185.00090 * 10 8 6 13 13 H 1.48497 * 109.47361 * 304.99924 * 10 8 6 14 14 C 1.34771 * 120.00100 * 235.00861 * 5 4 3 15 15 O 1.21600 * 120.00232 * 173.00376 * 14 5 4 16 16 C 1.47710 * 120.00089 * 353.00402 * 14 5 4 17 17 C 1.40030 * 120.96328 * 44.00511 * 16 14 5 18 18 C 1.37930 * 119.05690 * 179.97438 * 17 16 14 19 19 N 1.31932 * 121.08276 * 359.97438 * 18 17 16 20 20 C 1.31655 * 122.15922 * 0.02562 * 19 18 17 21 21 C 1.38901 * 120.80111 * 359.73591 * 20 19 18 22 22 O 1.35678 * 120.58295 * 180.29010 * 21 20 19 23 23 H 1.08993 * 109.46824 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46388 * 299.99199 * 1 2 3 25 25 H 1.08989 * 109.47320 * 59.99836 * 1 2 3 26 26 H 1.08997 * 109.46761 * 60.00470 * 3 2 1 27 27 H 1.08998 * 109.47218 * 300.00393 * 3 2 1 28 28 H 1.09001 * 109.47566 * 305.00236 * 4 3 2 29 29 H 1.09000 * 109.47467 * 184.99753 * 4 3 2 30 30 H 0.96995 * 120.00038 * 185.03221 * 9 8 6 31 31 H 1.07993 * 120.47112 * 359.94962 * 17 16 14 32 32 H 1.08006 * 119.46250 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.59840 * 180.02562 * 20 19 18 34 34 H 0.96694 * 113.99526 * 270.22785 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 3.6041 1.1074 -2.4527 7 1 2.5884 1.4424 -2.6025 8 6 4.5330 1.2224 -3.4813 9 7 5.8151 1.0938 -3.2259 10 14 3.9576 1.5596 -5.2262 11 1 3.3261 2.9022 -5.2883 12 1 5.1210 1.5167 -6.1481 13 1 2.9684 0.5280 -5.6293 14 6 4.7465 -0.5405 -1.2229 15 8 5.0065 -1.1285 -2.2551 16 6 5.2754 -1.0375 0.0635 17 6 4.4608 -1.1021 1.2007 18 6 4.9953 -1.5732 2.3817 19 7 6.2543 -1.9612 2.4527 20 6 7.0600 -1.9198 1.4123 21 6 6.6080 -1.4646 0.1803 22 8 7.4406 -1.4293 -0.8904 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 3.8515 0.5683 0.8409 29 1 3.9786 2.1766 0.0889 30 1 6.4671 1.2460 -3.9277 31 1 3.4289 -0.7871 1.1538 32 1 4.3730 -1.6254 3.2629 33 1 8.0836 -2.2481 1.5169 34 1 7.9262 -0.5984 -0.9838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317007726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:45 Heat of formation + Delta-G solvation = -76.369663 kcal Electronic energy + Delta-G solvation = -21011.353706 eV Core-core repulsion = 17717.390862 eV Total energy + Delta-G solvation = -3293.962844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.69289 -39.83407 -38.60580 -38.08835 -36.04739 -34.42188 -32.90665 -31.14480 -30.37537 -27.44215 -27.03209 -25.23247 -24.26884 -23.22585 -21.68737 -19.40491 -18.95974 -18.09086 -17.75164 -17.32719 -16.90717 -16.64377 -16.31070 -15.96313 -15.76888 -15.46452 -15.22275 -14.76529 -14.36400 -14.02986 -13.71805 -13.47439 -13.10879 -13.06217 -12.76090 -12.66975 -12.43569 -12.20503 -12.14730 -11.77091 -10.87090 -10.77848 -10.52732 -10.42166 -9.93851 -9.79819 -9.12219 -8.24484 -5.99289 -0.07549 0.04141 1.34903 1.44567 1.47859 2.21407 2.42637 2.78674 2.96776 3.04135 3.16341 3.29157 3.59339 3.90708 3.98490 4.07857 4.27276 4.35332 4.46041 4.54238 4.62961 4.64456 4.76579 4.81622 4.90672 4.92822 5.04037 5.15488 5.47738 5.58140 6.18022 6.37086 6.69380 6.91475 6.98381 7.18692 7.60817 8.30970 8.85390 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.009571 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.525787 B = 2924.932188 C = 4388.681699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.411 6.411 3 C 0.058 3.942 4 C 0.069 3.931 5 N -0.446 5.446 6 C -0.354 4.354 7 H 0.082 0.918 8 C 0.015 3.985 9 N -0.864 5.864 10 Si 0.973 3.027 11 H -0.253 1.253 12 H -0.288 1.288 13 H -0.284 1.284 14 C 0.508 3.492 15 O -0.578 6.578 16 C -0.112 4.112 17 C -0.142 4.142 18 C 0.090 3.910 19 N -0.471 5.471 20 C 0.078 3.922 21 C 0.077 3.923 22 O -0.492 6.492 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.262 0.738 31 H 0.166 0.834 32 H 0.204 0.796 33 H 0.187 0.813 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 1.426 12.389 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.331 6.331 3 C -0.019 4.019 4 C -0.053 4.053 5 N -0.167 5.167 6 C -0.481 4.481 7 H 0.099 0.901 8 C -0.191 4.191 9 N -0.499 5.499 10 Si 0.798 3.202 11 H -0.178 1.178 12 H -0.214 1.214 13 H -0.210 1.210 14 C 0.296 3.704 15 O -0.459 6.459 16 C -0.124 4.124 17 C -0.162 4.162 18 C -0.066 4.066 19 N -0.182 5.182 20 C -0.080 4.080 21 C 0.029 3.971 22 O -0.302 6.302 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.129 0.871 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.183 0.817 32 H 0.220 0.780 33 H 0.204 0.796 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.418 0.088 12.425 13.187 hybrid contribution -0.317 1.251 -2.261 2.604 sum -4.735 1.339 10.164 11.292 Atomic orbital electron populations 1.22851 0.79993 1.03274 1.00585 1.87870 1.21121 1.28595 1.95495 1.22838 0.93076 0.84811 1.01155 1.22519 0.94030 0.99707 0.89087 1.43129 1.46479 1.21713 1.05336 1.19178 0.95772 1.42590 0.90597 0.90082 1.26110 0.94783 0.94913 1.03334 1.69836 1.01457 1.44061 1.34517 0.85323 0.77474 0.78792 0.78568 1.17777 1.21354 1.20953 1.18145 0.83460 0.81482 0.87293 1.90579 1.61142 1.58399 1.35824 1.21466 0.95929 0.99440 0.95599 1.22753 1.02062 0.99395 0.91974 1.23248 0.91626 0.93825 0.97887 1.67618 1.05556 1.14381 1.30658 1.23382 1.01297 0.97484 0.85855 1.19964 0.89325 0.99287 0.88566 1.84739 1.58232 1.41561 1.45635 0.89225 0.91792 0.94780 0.89358 0.93952 0.87137 0.91178 0.92921 0.81702 0.77968 0.79597 0.74188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -13.69 9.68 -148.98 -1.44 -15.13 16 3 C 0.06 1.83 5.92 71.98 0.43 2.26 16 4 C 0.07 2.59 5.65 86.38 0.49 3.08 16 5 N -0.45 -22.52 2.67 -638.97 -1.70 -24.22 16 6 C -0.35 -19.49 8.69 84.11 0.73 -18.76 16 7 H 0.08 4.27 6.65 -2.91 -0.02 4.25 16 8 C 0.02 0.86 4.50 84.96 0.38 1.25 16 9 N -0.86 -51.38 11.61 21.68 0.25 -51.13 16 10 Si 0.97 45.62 29.58 68.60 2.03 47.65 16 11 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 14 C 0.51 27.44 6.23 86.75 0.54 27.98 16 15 O -0.58 -37.30 14.35 6.57 0.09 -37.21 16 16 C -0.11 -4.87 5.40 -19.81 -0.11 -4.98 16 17 C -0.14 -4.71 7.57 22.63 0.17 -4.54 16 18 C 0.09 2.40 11.16 84.60 0.94 3.34 16 19 N -0.47 -13.93 10.33 -195.60 -2.02 -15.95 16 20 C 0.08 2.45 11.14 84.88 0.95 3.40 16 21 C 0.08 3.07 6.73 22.96 0.15 3.23 16 22 O -0.49 -21.07 12.55 -79.36 -1.00 -22.06 16 23 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.04 1.48 6.68 -2.39 -0.02 1.46 16 28 H 0.11 3.69 3.09 -2.42 -0.01 3.68 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.17 5.18 5.14 -2.91 -0.01 5.17 16 32 H 0.20 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.19 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.40 14.68 9.06 -74.06 -0.67 14.01 16 Total: -1.00 -78.88 291.84 2.62 -76.27 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.48 Total: 23.58 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 5.92 Total: 18.20 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -3.47 Total: -91.29 kcal Atomic # 8 Polarization: -72.06 SS G_CDS: -2.34 Total: -74.40 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -78.88 2.62 -76.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317007726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.100 kcal (2) G-P(sol) polarization free energy of solvation -78.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds