Wall clock time and date at job start Mon Mar 30 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00281 * 2 1 4 4 C 1.52996 * 109.47444 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47279 * 64.99517 * 4 3 2 6 6 C 1.36907 * 120.00216 * 291.36599 * 5 4 3 7 7 H 1.08002 * 120.00223 * 40.71299 * 6 5 4 8 8 C 1.39027 * 120.00157 * 220.70819 * 6 5 4 9 9 N 1.31383 * 119.99506 * 37.21038 * 8 6 5 10 10 Si 1.86793 * 120.00163 * 217.21007 * 8 6 5 11 11 H 1.48500 * 109.47249 * 90.00359 * 10 8 6 12 12 H 1.48499 * 109.47114 * 209.99835 * 10 8 6 13 13 H 1.48500 * 109.47287 * 330.00273 * 10 8 6 14 14 C 1.34777 * 119.99728 * 111.35789 * 5 4 3 15 15 O 1.21620 * 119.99994 * 178.08863 * 14 5 4 16 16 C 1.47448 * 120.00162 * 358.36964 * 14 5 4 17 17 C 1.39604 * 120.61727 * 328.19825 * 16 14 5 18 18 N 1.31635 * 120.59599 * 179.97438 * 17 16 14 19 19 C 1.32129 * 122.06739 * 0.02562 * 18 17 16 20 20 C 1.37929 * 121.19534 * 0.02562 * 19 18 17 21 21 C 1.39196 * 119.24365 * 359.67965 * 20 19 18 22 22 O 1.35508 * 120.93346 * 180.29472 * 21 20 19 23 23 H 1.08997 * 109.47486 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46955 * 300.00975 * 1 2 3 25 25 H 1.09006 * 109.46655 * 60.00156 * 1 2 3 26 26 H 1.09003 * 109.46962 * 59.99553 * 3 2 1 27 27 H 1.08996 * 109.47215 * 299.99999 * 3 2 1 28 28 H 1.09003 * 109.46955 * 305.00243 * 4 3 2 29 29 H 1.08999 * 109.47608 * 185.00058 * 4 3 2 30 30 H 0.96999 * 119.99678 * 184.96802 * 9 8 6 31 31 H 1.07997 * 119.69968 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.40110 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.37372 * 179.97438 * 20 19 18 34 34 H 0.96698 * 114.00040 * 270.27184 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 3.6930 -0.7522 -1.4994 7 1 2.7254 -1.1548 -1.2383 8 6 4.6504 -1.5706 -2.0880 9 7 5.9184 -1.4284 -1.7747 10 14 4.1340 -2.8723 -3.3242 11 1 4.1501 -2.2912 -4.6907 12 1 5.0785 -4.0165 -3.2619 13 1 2.7631 -3.3439 -3.0030 14 6 4.6619 1.2884 -2.1575 15 8 5.0584 0.7642 -3.1807 16 6 4.9361 2.7152 -1.9060 17 6 4.0357 3.4946 -1.1775 18 7 4.2812 4.7682 -0.9528 19 6 5.3742 5.3613 -1.3992 20 6 6.3168 4.6669 -2.1285 21 6 6.1128 3.3153 -2.3913 22 8 7.0192 2.5988 -3.0992 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8508 0.5684 0.8427 29 1 3.9786 2.1764 0.0902 30 1 6.5936 -1.9489 -2.2374 31 1 3.1296 3.0487 -0.7949 32 1 5.5324 6.4089 -1.1893 33 1 7.2053 5.1651 -2.4873 34 1 6.8652 2.6032 -4.0538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317013701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:52 Heat of formation + Delta-G solvation = -43.918312 kcal Electronic energy + Delta-G solvation = -20953.829262 eV Core-core repulsion = 17661.273615 eV Total energy + Delta-G solvation = -3292.555648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36078 -38.20703 -37.18594 -36.83534 -34.20784 -32.48099 -30.87834 -30.59784 -29.00330 -26.02960 -25.14994 -23.45633 -22.90903 -22.04034 -19.79814 -18.20022 -17.29601 -16.40627 -16.33055 -16.02432 -15.42334 -15.20603 -14.69860 -14.34536 -14.17615 -13.93232 -13.72874 -13.15335 -12.88557 -12.87063 -12.46129 -11.83786 -11.47681 -11.43127 -11.04119 -10.88868 -10.66927 -10.45826 -10.31021 -10.13602 -9.53446 -9.18821 -9.07619 -8.69390 -8.60414 -8.11818 -7.25299 -6.19160 -3.71784 1.14642 1.38618 3.40318 3.48992 3.53160 3.72799 4.18848 4.28587 4.38975 4.54819 4.62155 4.87736 5.06843 5.22210 5.35362 5.36805 5.50761 5.61908 5.72694 5.76252 5.76971 5.87910 5.91644 5.99234 6.02154 6.09931 6.45660 6.59503 6.79290 7.65170 7.79655 7.98827 8.13601 8.30460 8.98728 9.18407 9.63225 10.19216 10.86296 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.009343 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.584662 B = 2996.053123 C = 4452.275535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.050 3.950 4 C 0.072 3.928 5 N -0.420 5.420 6 C -0.351 4.351 7 H 0.107 0.893 8 C 0.091 3.909 9 N -0.810 5.810 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.292 1.292 13 H -0.272 1.272 14 C 0.499 3.501 15 O -0.543 6.543 16 C -0.176 4.176 17 C 0.108 3.892 18 N -0.498 5.498 19 C 0.105 3.895 20 C -0.211 4.211 21 C 0.192 3.808 22 O -0.474 6.474 23 H 0.081 0.919 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.172 0.828 32 H 0.155 0.845 33 H 0.138 0.862 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 10.375 1.989 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.277 6.277 3 C -0.028 4.028 4 C -0.051 4.051 5 N -0.139 5.139 6 C -0.476 4.476 7 H 0.124 0.876 8 C -0.122 4.122 9 N -0.441 5.441 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.218 1.218 13 H -0.197 1.197 14 C 0.288 3.712 15 O -0.424 6.424 16 C -0.183 4.183 17 C -0.050 4.050 18 N -0.209 5.209 19 C -0.052 4.052 20 C -0.231 4.231 21 C 0.137 3.863 22 O -0.285 6.285 23 H 0.099 0.901 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.189 0.811 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.279 10.154 2.530 11.305 hybrid contribution 0.243 -0.704 -1.445 1.626 sum -4.036 9.450 1.085 10.333 Atomic orbital electron populations 1.22698 0.82905 1.02223 0.99031 1.88188 1.17903 1.26642 1.94975 1.22993 0.95243 0.85525 0.99063 1.22330 0.91940 0.99483 0.91398 1.43268 1.48922 1.09765 1.11951 1.19380 0.99362 0.83898 1.44980 0.87597 1.25133 0.94253 0.96338 0.96494 1.70138 1.01589 1.38751 1.33666 0.86499 0.78461 0.79743 0.83193 1.20221 1.21805 1.19715 1.17424 0.85187 0.83446 0.85171 1.90590 1.53121 1.70981 1.27718 1.22129 0.95527 0.98873 1.01734 1.23569 0.99315 0.88848 0.93240 1.67640 1.20809 1.11237 1.21165 1.22576 0.89232 0.99927 0.93424 1.22380 1.02313 0.93881 1.04557 1.18832 0.86482 0.88603 0.92362 1.84645 1.48575 1.72063 1.23217 0.90091 0.94960 0.94609 0.93440 0.93556 0.90771 0.89114 0.92463 0.81110 0.82745 0.84436 0.74256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.78 8.21 -35.23 -0.29 -7.07 16 3 C 0.05 0.84 5.31 37.16 0.20 1.04 16 4 C 0.07 1.46 5.40 -4.04 -0.02 1.43 16 5 N -0.42 -10.59 2.64 -116.02 -0.31 -10.89 16 6 C -0.35 -9.76 8.63 -14.99 -0.13 -9.89 16 7 H 0.11 2.91 6.02 -52.49 -0.32 2.59 16 8 C 0.09 2.61 3.69 -17.45 -0.06 2.55 16 9 N -0.81 -24.33 12.87 55.50 0.71 -23.61 16 10 Si 0.89 22.47 29.68 -169.99 -5.05 17.42 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.50 12.81 6.88 -12.51 -0.09 12.72 16 15 O -0.54 -15.74 13.96 -12.29 -0.17 -15.91 16 16 C -0.18 -3.68 5.47 -104.70 -0.57 -4.25 16 17 C 0.11 1.92 8.56 -17.13 -0.15 1.77 16 18 N -0.50 -8.05 10.34 -12.96 -0.13 -8.19 16 19 C 0.10 1.45 11.16 -17.54 -0.20 1.26 16 20 C -0.21 -3.10 10.06 -39.34 -0.40 -3.49 16 21 C 0.19 3.63 6.75 -38.29 -0.26 3.37 16 22 O -0.47 -9.28 12.22 -35.77 -0.44 -9.72 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.77 7.26 -51.93 -0.38 0.39 16 28 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.09 1.66 3.89 -51.93 -0.20 1.46 16 30 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.17 2.83 3.70 -52.49 -0.19 2.64 16 32 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.40 6.26 9.06 45.56 0.41 6.67 16 LS Contribution 289.24 15.07 4.36 4.36 Total: -1.00 -35.33 289.24 -4.64 -39.97 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -2.77 Total: 5.63 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.56 Total: 8.02 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.27 Total: -42.70 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.90 Total: -32.69 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.05 Total: 17.42 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -35.33 -4.64 -39.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317013701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.950 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds