Wall clock time and date at job start Mon Mar 30 2020 04:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00281 * 2 1 4 4 C 1.52996 * 109.47444 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47279 * 64.99517 * 4 3 2 6 6 C 1.36907 * 120.00216 * 291.36599 * 5 4 3 7 7 H 1.08002 * 120.00223 * 40.71299 * 6 5 4 8 8 C 1.39027 * 120.00157 * 220.70819 * 6 5 4 9 9 N 1.31383 * 119.99506 * 37.21038 * 8 6 5 10 10 Si 1.86793 * 120.00163 * 217.21007 * 8 6 5 11 11 H 1.48500 * 109.47249 * 90.00359 * 10 8 6 12 12 H 1.48499 * 109.47114 * 209.99835 * 10 8 6 13 13 H 1.48500 * 109.47287 * 330.00273 * 10 8 6 14 14 C 1.34777 * 119.99728 * 111.35789 * 5 4 3 15 15 O 1.21620 * 119.99994 * 178.08863 * 14 5 4 16 16 C 1.47448 * 120.00162 * 358.36964 * 14 5 4 17 17 C 1.39604 * 120.61727 * 328.19825 * 16 14 5 18 18 N 1.31635 * 120.59599 * 179.97438 * 17 16 14 19 19 C 1.32129 * 122.06739 * 0.02562 * 18 17 16 20 20 C 1.37929 * 121.19534 * 0.02562 * 19 18 17 21 21 C 1.39196 * 119.24365 * 359.67965 * 20 19 18 22 22 O 1.35508 * 120.93346 * 180.29472 * 21 20 19 23 23 H 1.08997 * 109.47486 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46955 * 300.00975 * 1 2 3 25 25 H 1.09006 * 109.46655 * 60.00156 * 1 2 3 26 26 H 1.09003 * 109.46962 * 59.99553 * 3 2 1 27 27 H 1.08996 * 109.47215 * 299.99999 * 3 2 1 28 28 H 1.09003 * 109.46955 * 305.00243 * 4 3 2 29 29 H 1.08999 * 109.47608 * 185.00058 * 4 3 2 30 30 H 0.96999 * 119.99678 * 184.96802 * 9 8 6 31 31 H 1.07997 * 119.69968 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.40110 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.37372 * 179.97438 * 20 19 18 34 34 H 0.96698 * 114.00040 * 270.27184 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 3.6930 -0.7522 -1.4994 7 1 2.7254 -1.1548 -1.2383 8 6 4.6504 -1.5706 -2.0880 9 7 5.9184 -1.4284 -1.7747 10 14 4.1340 -2.8723 -3.3242 11 1 4.1501 -2.2912 -4.6907 12 1 5.0785 -4.0165 -3.2619 13 1 2.7631 -3.3439 -3.0030 14 6 4.6619 1.2884 -2.1575 15 8 5.0584 0.7642 -3.1807 16 6 4.9361 2.7152 -1.9060 17 6 4.0357 3.4946 -1.1775 18 7 4.2812 4.7682 -0.9528 19 6 5.3742 5.3613 -1.3992 20 6 6.3168 4.6669 -2.1285 21 6 6.1128 3.3153 -2.3913 22 8 7.0192 2.5988 -3.0992 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8508 0.5684 0.8427 29 1 3.9786 2.1764 0.0902 30 1 6.5936 -1.9489 -2.2374 31 1 3.1296 3.0487 -0.7949 32 1 5.5324 6.4089 -1.1893 33 1 7.2053 5.1651 -2.4873 34 1 6.8652 2.6032 -4.0538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317013701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:51 Heat of formation + Delta-G solvation = -71.700852 kcal Electronic energy + Delta-G solvation = -20955.034004 eV Core-core repulsion = 17661.273615 eV Total energy + Delta-G solvation = -3293.760389 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82118 -39.83443 -38.68342 -38.26266 -36.06035 -34.39549 -32.27297 -32.11320 -30.57839 -27.41801 -26.82379 -24.95203 -24.33806 -23.56233 -21.56280 -19.62986 -19.03933 -18.01069 -17.88537 -17.40852 -16.83220 -16.66769 -16.38259 -16.00995 -15.72382 -15.41633 -15.26806 -14.71632 -14.36980 -14.29781 -14.03192 -13.58155 -13.19618 -12.92154 -12.71310 -12.56317 -12.49224 -12.10019 -12.00842 -11.75990 -10.93891 -10.64491 -10.44929 -10.41788 -10.18867 -9.95170 -9.27094 -8.29900 -5.85978 -0.20707 0.05653 1.36433 1.47338 1.50218 2.18417 2.37728 2.73118 2.97646 3.04262 3.13539 3.22563 3.43600 3.80643 3.92741 4.06083 4.22516 4.29532 4.42331 4.46261 4.56101 4.63500 4.64244 4.71653 4.74769 4.92120 5.03139 5.12296 5.54351 5.65354 6.27823 6.43492 6.65669 6.84984 6.97463 7.17404 7.63286 8.22742 8.75288 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.009343 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.584662 B = 2996.053123 C = 4452.275535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.072 3.928 5 N -0.439 5.439 6 C -0.363 4.363 7 H 0.104 0.896 8 C 0.045 3.955 9 N -0.855 5.855 10 Si 0.947 3.053 11 H -0.294 1.294 12 H -0.285 1.285 13 H -0.254 1.254 14 C 0.494 3.506 15 O -0.590 6.590 16 C -0.216 4.216 17 C 0.119 3.881 18 N -0.500 5.500 19 C 0.126 3.874 20 C -0.195 4.195 21 C 0.174 3.826 22 O -0.496 6.496 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.259 0.741 31 H 0.180 0.820 32 H 0.209 0.791 33 H 0.176 0.824 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 13.392 2.814 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C -0.022 4.022 4 C -0.051 4.051 5 N -0.158 5.158 6 C -0.489 4.489 7 H 0.122 0.878 8 C -0.164 4.164 9 N -0.489 5.489 10 Si 0.772 3.228 11 H -0.221 1.221 12 H -0.211 1.211 13 H -0.178 1.178 14 C 0.284 3.716 15 O -0.474 6.474 16 C -0.223 4.223 17 C -0.038 4.038 18 N -0.210 5.210 19 C -0.030 4.030 20 C -0.215 4.215 21 C 0.120 3.880 22 O -0.309 6.309 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.197 0.803 32 H 0.225 0.775 33 H 0.194 0.806 34 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -5.271 13.177 3.384 14.590 hybrid contribution 0.525 -1.364 -1.674 2.222 sum -4.746 11.813 1.710 12.845 Atomic orbital electron populations 1.22891 0.80490 1.03228 1.00614 1.88109 1.20636 1.27807 1.95324 1.22945 0.92701 0.85422 1.01135 1.22493 0.94492 0.99596 0.88510 1.43427 1.49382 1.09269 1.13693 1.19530 0.99085 0.85102 1.45154 0.87836 1.25872 0.94336 0.98279 0.97889 1.70219 1.02457 1.41035 1.35208 0.85678 0.79094 0.77834 0.80153 1.22068 1.21147 1.17781 1.18189 0.83539 0.85408 0.84474 1.90531 1.54532 1.72735 1.29586 1.21887 0.98261 0.96504 1.05607 1.23574 0.98749 0.89316 0.92177 1.67796 1.21903 1.09956 1.21385 1.23496 0.87328 1.01856 0.90316 1.22720 1.03650 0.91680 1.03435 1.19259 0.86009 0.90290 0.92429 1.84595 1.49002 1.72965 1.24373 0.89548 0.92200 0.94048 0.89258 0.93226 0.92420 0.87266 0.93149 0.80331 0.77471 0.80649 0.73000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 11.01 113.37 1.25 1.88 16 2 O -0.40 -14.79 8.21 -148.98 -1.22 -16.02 16 3 C 0.06 1.79 5.31 71.98 0.38 2.17 16 4 C 0.07 2.89 5.40 86.38 0.47 3.36 16 5 N -0.44 -22.72 2.64 -639.24 -1.69 -24.40 16 6 C -0.36 -20.83 8.63 84.09 0.73 -20.10 16 7 H 0.10 5.85 6.02 -2.91 -0.02 5.83 16 8 C 0.04 2.66 3.69 84.95 0.31 2.97 16 9 N -0.85 -53.84 12.87 21.68 0.28 -53.56 16 10 Si 0.95 47.91 29.68 68.60 2.04 49.95 16 11 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.25 -11.91 7.11 99.48 0.71 -11.20 16 14 C 0.49 26.12 6.88 86.67 0.60 26.72 16 15 O -0.59 -35.73 13.96 12.69 0.18 -35.55 16 16 C -0.22 -8.97 5.47 -19.91 -0.11 -9.08 16 17 C 0.12 3.98 8.56 85.05 0.73 4.71 16 18 N -0.50 -14.13 10.34 -194.92 -2.02 -16.15 16 19 C 0.13 2.82 11.16 84.57 0.94 3.76 16 20 C -0.19 -4.93 10.06 22.43 0.23 -4.70 16 21 C 0.17 6.39 6.75 23.11 0.16 6.55 16 22 O -0.50 -19.64 12.22 -71.31 -0.87 -20.51 16 23 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.05 1.56 7.26 -2.39 -0.02 1.55 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.11 3.90 3.89 -2.39 -0.01 3.89 16 30 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 31 H 0.18 5.57 3.70 -2.91 -0.01 5.56 16 32 H 0.21 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.41 13.27 9.06 -74.06 -0.67 12.60 16 Total: -1.00 -81.20 289.24 2.85 -78.35 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.48 Total: 19.66 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 5.68 Total: 18.23 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -3.42 Total: -94.11 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -1.92 Total: -72.08 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.04 Total: 49.95 kcal Total: -81.20 2.85 -78.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317013701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.646 kcal (2) G-P(sol) polarization free energy of solvation -81.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds