Wall clock time and date at job start Mon Mar 30 2020 04:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99593 * 2 1 4 4 C 1.53003 * 109.46890 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47123 * 64.99978 * 4 3 2 6 6 C 1.36906 * 120.00305 * 92.88258 * 5 4 3 7 7 H 1.08001 * 119.99859 * 220.83936 * 6 5 4 8 8 C 1.39020 * 120.00000 * 41.11241 * 6 5 4 9 9 N 1.31381 * 120.00354 * 208.94562 * 8 6 5 10 10 Si 1.86799 * 119.99790 * 28.94889 * 8 6 5 11 11 H 1.48499 * 109.47113 * 95.46004 * 10 8 6 12 12 H 1.48498 * 109.47303 * 215.45672 * 10 8 6 13 13 H 1.48500 * 109.47248 * 335.46036 * 10 8 6 14 14 C 1.34785 * 119.99907 * 272.87998 * 5 4 3 15 15 O 1.21618 * 119.99756 * 6.49191 * 14 5 4 16 16 C 1.47514 * 119.99958 * 186.48600 * 14 5 4 17 17 C 1.40312 * 120.49699 * 206.23866 * 16 14 5 18 18 C 1.36953 * 118.46398 * 179.97438 * 17 16 14 19 19 C 1.39150 * 119.40384 * 359.97438 * 18 17 16 20 20 O 1.35508 * 119.51747 * 179.97438 * 19 18 17 21 21 N 1.32435 * 120.97661 * 0.02562 * 19 18 17 22 22 C 1.31704 * 121.66384 * 359.72551 * 21 19 18 23 23 H 1.08997 * 109.47980 * 300.00614 * 1 2 3 24 24 H 1.09001 * 109.47203 * 60.00941 * 1 2 3 25 25 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47523 * 59.99445 * 3 2 1 27 27 H 1.08999 * 109.47294 * 299.99384 * 3 2 1 28 28 H 1.09001 * 109.47176 * 304.99807 * 4 3 2 29 29 H 1.08999 * 109.46882 * 184.99836 * 4 3 2 30 30 H 0.97003 * 119.99584 * 0.02562 * 9 8 6 31 31 H 1.08001 * 120.77019 * 359.97438 * 17 16 14 32 32 H 1.08009 * 120.29905 * 180.02562 * 18 17 16 33 33 H 0.96699 * 114.00065 * 89.99532 * 20 19 18 34 34 H 1.07998 * 119.75252 * 180.26589 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.3244 1.3477 -2.3182 7 1 4.0252 1.0641 -3.3165 8 6 5.0675 2.5054 -2.1177 9 7 4.9382 3.5201 -2.9422 10 14 6.2500 2.6182 -0.6761 11 1 7.6171 2.2546 -1.1276 12 1 6.2560 4.0061 -0.1481 13 1 5.8171 1.6835 0.3936 14 6 4.0402 -0.7785 -1.3514 15 8 3.6208 -1.4765 -0.4481 16 6 4.6184 -1.4012 -2.5572 17 6 4.2281 -2.6906 -2.9496 18 6 4.7911 -3.2284 -4.0763 19 6 5.7253 -2.4874 -4.7936 20 8 6.2841 -3.0176 -5.9085 21 7 6.0770 -1.2721 -4.4024 22 6 5.5578 -0.7142 -3.3283 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6884 1.8465 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8507 0.5686 0.8427 29 1 3.9783 2.1766 0.0902 30 1 4.3238 3.4616 -3.6906 31 1 3.5006 -3.2461 -2.3764 32 1 4.5119 -4.2185 -4.4056 33 1 5.7969 -2.8266 -6.7216 34 1 5.8639 0.2805 -3.0398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317039259.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:37 Heat of formation + Delta-G solvation = -64.833272 kcal Electronic energy + Delta-G solvation = -20681.994856 eV Core-core repulsion = 17388.532268 eV Total energy + Delta-G solvation = -3293.462588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15025 -38.69442 -37.14580 -36.40008 -35.03859 -32.20849 -32.01642 -30.61259 -28.71241 -25.91003 -24.80076 -23.54062 -23.03504 -22.01243 -19.42068 -18.47442 -18.04718 -16.72912 -16.17779 -15.72900 -15.53820 -15.46981 -15.07453 -14.41176 -14.00347 -13.77052 -13.66053 -13.28492 -12.69914 -12.64825 -12.24872 -12.21804 -11.89031 -11.56581 -11.50974 -11.26809 -10.82164 -10.48395 -10.06693 -9.81874 -9.48612 -9.38125 -9.10695 -8.92242 -8.58615 -8.33706 -7.95402 -6.98563 -4.25008 1.22216 1.74196 3.13870 3.23323 3.36607 3.60618 4.03021 4.07830 4.24494 4.35849 4.46400 4.82970 5.20428 5.41352 5.52598 5.55891 5.61226 5.66776 5.81718 5.87663 5.91984 5.95051 5.98106 6.20758 6.22045 6.43479 6.57135 6.75850 7.07734 7.53774 7.69475 7.73677 7.76414 8.21216 8.40589 8.85224 9.17868 9.68222 10.32119 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.008828 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.338084 B = 3170.981129 C = 4427.131085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.449 5.449 6 C -0.439 4.439 7 H 0.088 0.912 8 C 0.034 3.966 9 N -0.845 5.845 10 Si 1.026 2.974 11 H -0.276 1.276 12 H -0.277 1.277 13 H -0.268 1.268 14 C 0.520 3.480 15 O -0.571 6.571 16 C -0.159 4.159 17 C -0.026 4.026 18 C -0.206 4.206 19 C 0.302 3.698 20 O -0.488 6.488 21 N -0.515 5.515 22 C 0.167 3.833 23 H 0.031 0.969 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.281 0.719 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.394 0.606 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -5.154 0.298 6.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C -0.029 4.029 4 C -0.004 4.004 5 N -0.169 5.169 6 C -0.565 4.565 7 H 0.106 0.894 8 C -0.179 4.179 9 N -0.474 5.474 10 Si 0.851 3.149 11 H -0.203 1.203 12 H -0.202 1.202 13 H -0.193 1.193 14 C 0.309 3.691 15 O -0.454 6.454 16 C -0.164 4.164 17 C -0.053 4.053 18 C -0.227 4.227 19 C 0.123 3.877 20 O -0.294 6.294 21 N -0.234 5.234 22 C 0.010 3.990 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.251 0.749 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.928 -4.411 1.331 4.994 hybrid contribution -2.357 -0.907 -0.991 2.713 sum -4.285 -5.318 0.341 6.838 Atomic orbital electron populations 1.22639 0.83160 1.01805 0.98920 1.88194 1.17596 1.27078 1.95090 1.22988 0.95423 0.85017 0.99466 1.21703 0.91453 0.98293 0.88984 1.43407 1.57605 1.03788 1.12135 1.20360 1.38900 1.08542 0.88738 0.89445 1.26447 0.97311 0.90855 1.03334 1.70788 1.34911 1.27110 1.14632 0.84332 0.77255 0.77119 0.76196 1.20258 1.20226 1.19288 1.17992 0.81829 0.82982 0.86293 1.90678 1.51152 1.62433 1.41150 1.21148 1.01145 0.95479 0.98644 1.21288 0.96476 0.93735 0.93756 1.21613 0.99747 1.02306 0.99044 1.19497 0.90242 0.88822 0.89095 1.84703 1.54452 1.74101 1.16178 1.67483 1.26652 1.11042 1.18200 1.24384 0.88991 0.99620 0.85967 0.95008 0.94939 0.90414 0.93909 0.92945 0.90608 0.90032 0.90811 0.84281 0.84813 0.74873 0.78255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.34 8.90 -53.00 -0.47 -7.81 16 3 C 0.05 0.93 6.28 37.16 0.23 1.17 16 4 C 0.12 2.51 4.03 -4.04 -0.02 2.49 16 5 N -0.45 -10.39 2.07 -116.00 -0.24 -10.62 16 6 C -0.44 -10.49 6.11 -15.00 -0.09 -10.58 16 7 H 0.09 2.25 6.92 -52.49 -0.36 1.88 16 8 C 0.03 0.81 4.84 -17.45 -0.08 0.73 16 9 N -0.84 -21.63 13.69 55.50 0.76 -20.87 16 10 Si 1.03 21.68 26.66 -169.99 -4.53 17.15 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.27 -5.39 5.73 56.52 0.32 -5.07 16 14 C 0.52 12.25 7.12 -12.48 -0.09 12.16 16 15 O -0.57 -14.38 14.97 -12.51 -0.19 -14.57 16 16 C -0.16 -3.41 5.57 -104.83 -0.58 -4.00 16 17 C -0.03 -0.48 9.66 -39.27 -0.38 -0.86 16 18 C -0.21 -3.35 9.97 -39.71 -0.40 -3.75 16 19 C 0.30 5.37 7.74 -16.95 -0.13 5.24 16 20 O -0.49 -7.24 13.55 -18.22 -0.25 -7.49 16 21 N -0.51 -10.60 10.38 -12.93 -0.13 -10.73 16 22 C 0.17 3.59 9.13 -17.10 -0.16 3.43 16 23 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.61 7.61 -51.93 -0.40 1.22 16 29 H 0.08 1.64 4.61 -51.93 -0.24 1.40 16 30 H 0.28 7.15 8.73 -40.82 -0.36 6.80 16 31 H 0.14 2.41 7.93 -52.49 -0.42 1.99 16 32 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 33 H 0.39 3.76 9.06 45.56 0.41 4.18 16 34 H 0.20 4.58 5.16 -52.49 -0.27 4.31 16 LS Contribution 290.42 15.07 4.38 4.38 Total: -1.00 -29.85 290.42 -4.30 -34.14 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -3.04 Total: 8.79 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -0.58 Total: 7.64 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.39 Total: -42.23 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.91 Total: -29.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.53 Total: 17.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.85 -4.30 -34.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317039259.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.692 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds