Wall clock time and date at job start Mon Mar 30 2020 04:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99593 * 2 1 4 4 C 1.53003 * 109.46890 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47123 * 64.99978 * 4 3 2 6 6 C 1.36906 * 120.00305 * 92.88258 * 5 4 3 7 7 H 1.08001 * 119.99859 * 220.83936 * 6 5 4 8 8 C 1.39020 * 120.00000 * 41.11241 * 6 5 4 9 9 N 1.31381 * 120.00354 * 208.94562 * 8 6 5 10 10 Si 1.86799 * 119.99790 * 28.94889 * 8 6 5 11 11 H 1.48499 * 109.47113 * 95.46004 * 10 8 6 12 12 H 1.48498 * 109.47303 * 215.45672 * 10 8 6 13 13 H 1.48500 * 109.47248 * 335.46036 * 10 8 6 14 14 C 1.34785 * 119.99907 * 272.87998 * 5 4 3 15 15 O 1.21618 * 119.99756 * 6.49191 * 14 5 4 16 16 C 1.47514 * 119.99958 * 186.48600 * 14 5 4 17 17 C 1.40312 * 120.49699 * 206.23866 * 16 14 5 18 18 C 1.36953 * 118.46398 * 179.97438 * 17 16 14 19 19 C 1.39150 * 119.40384 * 359.97438 * 18 17 16 20 20 O 1.35508 * 119.51747 * 179.97438 * 19 18 17 21 21 N 1.32435 * 120.97661 * 0.02562 * 19 18 17 22 22 C 1.31704 * 121.66384 * 359.72551 * 21 19 18 23 23 H 1.08997 * 109.47980 * 300.00614 * 1 2 3 24 24 H 1.09001 * 109.47203 * 60.00941 * 1 2 3 25 25 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47523 * 59.99445 * 3 2 1 27 27 H 1.08999 * 109.47294 * 299.99384 * 3 2 1 28 28 H 1.09001 * 109.47176 * 304.99807 * 4 3 2 29 29 H 1.08999 * 109.46882 * 184.99836 * 4 3 2 30 30 H 0.97003 * 119.99584 * 0.02562 * 9 8 6 31 31 H 1.08001 * 120.77019 * 359.97438 * 17 16 14 32 32 H 1.08009 * 120.29905 * 180.02562 * 18 17 16 33 33 H 0.96699 * 114.00065 * 89.99532 * 20 19 18 34 34 H 1.07998 * 119.75252 * 180.26589 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.3244 1.3477 -2.3182 7 1 4.0252 1.0641 -3.3165 8 6 5.0675 2.5054 -2.1177 9 7 4.9382 3.5201 -2.9422 10 14 6.2500 2.6182 -0.6761 11 1 7.6171 2.2546 -1.1276 12 1 6.2560 4.0061 -0.1481 13 1 5.8171 1.6835 0.3936 14 6 4.0402 -0.7785 -1.3514 15 8 3.6208 -1.4765 -0.4481 16 6 4.6184 -1.4012 -2.5572 17 6 4.2281 -2.6906 -2.9496 18 6 4.7911 -3.2284 -4.0763 19 6 5.7253 -2.4874 -4.7936 20 8 6.2841 -3.0176 -5.9085 21 7 6.0770 -1.2721 -4.4024 22 6 5.5578 -0.7142 -3.3283 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6884 1.8465 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8507 0.5686 0.8427 29 1 3.9783 2.1766 0.0902 30 1 4.3238 3.4616 -3.6906 31 1 3.5006 -3.2461 -2.3764 32 1 4.5119 -4.2185 -4.4056 33 1 5.7969 -2.8266 -6.7216 34 1 5.8639 0.2805 -3.0398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317039259.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:36 Heat of formation + Delta-G solvation = -88.486919 kcal Electronic energy + Delta-G solvation = -20683.020555 eV Core-core repulsion = 17388.532268 eV Total energy + Delta-G solvation = -3294.488287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69975 -40.32625 -38.59431 -37.78816 -36.85204 -34.04637 -33.53020 -32.16522 -30.23686 -27.21648 -26.63921 -25.07564 -24.56483 -23.55954 -21.19401 -19.85786 -19.73138 -18.37385 -17.78302 -17.18415 -16.99354 -16.94980 -16.68420 -15.94837 -15.60259 -15.33398 -15.24071 -14.88362 -14.31294 -14.23475 -13.89045 -13.66998 -13.44376 -13.10424 -12.80414 -12.75052 -12.46898 -11.97011 -11.79988 -11.54622 -11.13154 -10.94912 -10.65768 -10.52582 -10.26291 -9.84742 -9.81822 -8.90437 -6.15868 -0.27448 0.26990 1.42824 1.49898 1.69623 1.99292 2.31052 2.54884 2.59019 2.85694 2.97238 3.09416 3.77269 4.00461 4.03006 4.16477 4.20084 4.28181 4.41254 4.45076 4.50899 4.54413 4.61963 4.78858 4.79822 4.90436 5.02252 5.25614 5.56158 5.68365 5.81852 6.26761 6.38141 6.61820 6.91064 6.99455 7.34006 7.85091 8.39730 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.008828 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.338084 B = 3170.981129 C = 4427.131085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.054 3.946 4 C 0.110 3.890 5 N -0.456 5.456 6 C -0.423 4.423 7 H 0.062 0.938 8 C 0.008 3.992 9 N -0.872 5.872 10 Si 1.056 2.944 11 H -0.276 1.276 12 H -0.268 1.268 13 H -0.254 1.254 14 C 0.515 3.485 15 O -0.592 6.592 16 C -0.188 4.188 17 C -0.023 4.023 18 C -0.186 4.186 19 C 0.310 3.690 20 O -0.486 6.486 21 N -0.540 5.540 22 C 0.159 3.841 23 H 0.056 0.944 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.271 0.729 31 H 0.152 0.848 32 H 0.179 0.821 33 H 0.420 0.580 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 -6.666 0.412 7.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.023 4.023 4 C -0.013 4.013 5 N -0.176 5.176 6 C -0.550 4.550 7 H 0.080 0.920 8 C -0.200 4.200 9 N -0.503 5.503 10 Si 0.877 3.123 11 H -0.202 1.202 12 H -0.193 1.193 13 H -0.179 1.179 14 C 0.305 3.695 15 O -0.477 6.477 16 C -0.193 4.193 17 C -0.049 4.049 18 C -0.206 4.206 19 C 0.131 3.869 20 O -0.296 6.296 21 N -0.260 5.260 22 C 0.003 3.997 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.196 0.804 33 H 0.282 0.718 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.321 -5.916 1.422 6.512 hybrid contribution -2.265 -0.607 -1.174 2.622 sum -4.585 -6.523 0.249 7.977 Atomic orbital electron populations 1.22845 0.80763 1.03061 1.00268 1.88134 1.20333 1.27630 1.95363 1.22898 0.93951 0.85047 1.00432 1.21859 0.93268 0.98302 0.87831 1.43514 1.57772 1.03846 1.12490 1.20034 1.38603 1.08266 0.88139 0.92032 1.27232 0.97793 0.90488 1.04523 1.70875 1.35908 1.28105 1.15393 0.83942 0.75828 0.77800 0.74684 1.20246 1.19318 1.17858 1.18344 0.81319 0.83037 0.86767 1.90641 1.52189 1.62778 1.42063 1.21099 1.02359 0.97082 0.98736 1.21492 0.96519 0.92492 0.94399 1.21948 0.97891 1.03550 0.97225 1.19738 0.89495 0.87849 0.89805 1.84654 1.54902 1.73464 1.16606 1.67411 1.27696 1.12866 1.18029 1.23875 0.89866 0.99118 0.86825 0.92542 0.94604 0.89298 0.90453 0.94280 0.90942 0.89393 0.91875 0.83071 0.80378 0.71823 0.80538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -15.71 8.90 -131.99 -1.17 -16.88 16 3 C 0.05 2.02 6.28 71.98 0.45 2.48 16 4 C 0.11 4.61 4.03 86.38 0.35 4.95 16 5 N -0.46 -21.35 2.07 -639.16 -1.32 -22.67 16 6 C -0.42 -20.81 6.11 84.09 0.51 -20.30 16 7 H 0.06 3.32 6.92 -2.91 -0.02 3.30 16 8 C 0.01 0.40 4.84 84.95 0.41 0.81 16 9 N -0.87 -45.74 13.69 21.68 0.30 -45.44 16 10 Si 1.06 43.89 26.66 68.60 1.83 45.72 16 11 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 13 H -0.25 -9.93 5.73 99.48 0.57 -9.36 16 14 C 0.52 24.48 7.12 86.69 0.62 25.10 16 15 O -0.59 -29.79 14.97 12.90 0.19 -29.60 16 16 C -0.19 -8.05 5.57 -20.00 -0.11 -8.17 16 17 C -0.02 -0.80 9.66 22.47 0.22 -0.58 16 18 C -0.19 -5.41 9.97 22.19 0.22 -5.19 16 19 C 0.31 10.26 7.74 84.82 0.66 10.92 16 20 O -0.49 -12.77 13.55 -88.10 -1.19 -13.96 16 21 N -0.54 -21.95 10.38 -307.70 -3.19 -25.15 16 22 C 0.16 6.97 9.13 85.04 0.78 7.74 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 3.05 7.61 -2.39 -0.02 3.03 16 29 H 0.09 3.49 4.61 -2.39 -0.01 3.47 16 30 H 0.27 14.34 8.73 -92.71 -0.81 13.54 16 31 H 0.15 4.92 7.93 -2.91 -0.02 4.89 16 32 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.42 6.46 9.06 -74.06 -0.67 5.79 16 34 H 0.18 8.45 5.16 -2.91 -0.02 8.44 16 Total: -1.00 -64.93 290.42 1.08 -63.85 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.30 Total: 24.35 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 5.35 Total: 19.79 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -4.22 Total: -93.26 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: -2.17 Total: -60.44 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.83 Total: 45.72 kcal Total: -64.93 1.08 -63.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317039259.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.635 kcal (2) G-P(sol) polarization free energy of solvation -64.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds