Wall clock time and date at job start Mon Mar 30 2020 04:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00160 * 2 1 4 4 C 1.53004 * 109.46994 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47034 * 63.87287 * 4 3 2 6 6 C 1.36779 * 120.00102 * 264.60366 * 5 4 3 7 7 H 1.08002 * 119.99971 * 136.55250 * 6 5 4 8 8 C 1.39107 * 120.00154 * 316.56213 * 6 5 4 9 9 N 1.31318 * 120.00111 * 170.06555 * 8 6 5 10 10 Si 1.86806 * 119.99624 * 350.05751 * 8 6 5 11 11 H 1.48497 * 109.46808 * 91.39242 * 10 8 6 12 12 H 1.48501 * 109.46891 * 211.38905 * 10 8 6 13 13 H 1.48500 * 109.47061 * 331.38901 * 10 8 6 14 14 C 1.34784 * 120.00141 * 84.60408 * 5 4 3 15 15 O 1.21569 * 119.99882 * 4.43954 * 14 5 4 16 16 C 1.47985 * 119.99809 * 184.43436 * 14 5 4 17 17 C 1.39275 * 119.69539 * 173.89068 * 16 14 5 18 18 C 1.38696 * 119.18040 * 179.97438 * 17 16 14 19 19 C 1.38406 * 118.56488 * 359.75217 * 18 17 16 20 20 C 1.39237 * 119.32774 * 0.49473 * 19 18 17 21 21 O 1.35665 * 119.61625 * 179.77298 * 20 19 18 22 22 N 1.31938 * 120.77348 * 359.49046 * 20 19 18 23 23 H 1.09011 * 109.46853 * 299.99984 * 1 2 3 24 24 H 1.08994 * 109.47409 * 59.99393 * 1 2 3 25 25 H 1.08992 * 109.47240 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47155 * 60.00329 * 3 2 1 27 27 H 1.08995 * 109.47152 * 300.00084 * 3 2 1 28 28 H 1.08997 * 109.47054 * 303.87453 * 4 3 2 29 29 H 1.09004 * 109.46995 * 183.87367 * 4 3 2 30 30 H 0.97009 * 119.99975 * 179.97438 * 9 8 6 31 31 H 1.08000 * 120.41115 * 359.96020 * 17 16 14 32 32 H 1.08003 * 120.71451 * 179.97438 * 18 17 16 33 33 H 1.08007 * 120.33702 * 180.24736 * 19 18 17 34 34 H 0.96696 * 113.99717 * 269.72563 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9737 0.5399 -1.2410 6 6 4.2009 -0.8087 -1.2676 7 1 3.8463 -1.3997 -2.0991 8 6 4.8883 -1.4190 -0.2236 9 7 4.9384 -2.7290 -0.1475 10 14 5.7404 -0.3749 1.0700 11 1 4.8077 -0.1263 2.1985 12 1 6.9425 -1.0895 1.5697 13 1 6.1484 0.9209 0.4703 14 6 4.1531 1.2756 -2.3560 15 8 4.0298 2.4842 -2.3131 16 6 4.5002 0.6120 -3.6324 17 6 4.5588 1.3604 -4.8055 18 6 4.8857 0.7277 -5.9956 19 6 5.1482 -0.6310 -5.9725 20 6 5.0669 -1.3208 -4.7657 21 8 5.3184 -2.6536 -4.7371 22 7 4.7535 -0.6924 -3.6487 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8528 0.5847 0.8523 29 1 3.9787 2.1780 0.0688 30 1 5.4182 -3.1546 0.5804 31 1 4.3521 2.4203 -4.7886 32 1 4.9379 1.2841 -6.9199 33 1 5.4094 -1.1517 -6.8819 34 1 4.5360 -3.2046 -4.8762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317040535.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:31 Heat of formation + Delta-G solvation = -42.761415 kcal Electronic energy + Delta-G solvation = -20828.981283 eV Core-core repulsion = 17536.475802 eV Total energy + Delta-G solvation = -3292.505481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05208 -38.60498 -37.12249 -36.25617 -34.88843 -32.10897 -31.89688 -30.00110 -29.13674 -25.94013 -25.05676 -23.75480 -22.81789 -22.09124 -19.51795 -18.27611 -17.26887 -16.61001 -15.99007 -15.80709 -15.62718 -15.21145 -14.80211 -14.59586 -14.38344 -14.00165 -13.72065 -12.86477 -12.78041 -12.56462 -12.24831 -11.81522 -11.75326 -11.60985 -11.42381 -11.14432 -10.89580 -10.77063 -10.15632 -9.85479 -9.41095 -9.22506 -9.14648 -9.00310 -8.41439 -8.26411 -7.54691 -6.23161 -3.80795 1.22858 1.71862 3.11393 3.26849 3.31609 3.52916 4.05491 4.20428 4.28708 4.41761 4.58215 5.04610 5.16684 5.41689 5.50721 5.55457 5.58755 5.64963 5.75627 5.81407 5.90796 5.99848 6.00687 6.04249 6.20857 6.37977 6.43270 6.58094 6.95712 7.41304 7.73810 8.00511 8.17024 8.49030 8.69334 9.08584 9.41540 9.66324 10.84108 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.008727 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.280828 B = 3207.605196 C = 3768.099686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.056 3.944 4 C 0.092 3.908 5 N -0.424 5.424 6 C -0.285 4.285 7 H 0.140 0.860 8 C 0.065 3.935 9 N -0.856 5.856 10 Si 0.871 3.129 11 H -0.274 1.274 12 H -0.289 1.289 13 H -0.264 1.264 14 C 0.505 3.495 15 O -0.603 6.603 16 C 0.132 3.868 17 C -0.145 4.145 18 C -0.079 4.079 19 C -0.193 4.193 20 C 0.296 3.704 21 O -0.479 6.479 22 N -0.419 5.419 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.272 0.728 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 3.767 -6.117 8.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.022 4.022 4 C -0.031 4.031 5 N -0.140 5.140 6 C -0.414 4.414 7 H 0.157 0.843 8 C -0.142 4.142 9 N -0.492 5.492 10 Si 0.700 3.300 11 H -0.201 1.201 12 H -0.216 1.216 13 H -0.189 1.189 14 C 0.296 3.704 15 O -0.490 6.490 16 C -0.006 4.006 17 C -0.166 4.166 18 C -0.105 4.105 19 C -0.216 4.216 20 C 0.116 3.884 21 O -0.286 6.286 22 N -0.139 5.139 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.964 3.663 -5.079 7.412 hybrid contribution -0.083 0.694 -0.012 0.699 sum -4.047 4.357 -5.091 7.828 Atomic orbital electron populations 1.22667 0.82824 1.02165 0.98855 1.88189 1.17880 1.26748 1.95062 1.22843 0.94549 0.85211 0.99610 1.21917 0.92516 0.99067 0.89594 1.43731 1.54328 1.08873 1.07101 1.19845 1.32614 0.79816 1.09162 0.84336 1.25368 0.96124 0.95335 0.97338 1.69589 1.39760 1.08303 1.31581 0.87069 0.79431 0.81394 0.82107 1.20106 1.21607 1.18873 1.17908 0.82879 0.85580 0.84074 1.90622 1.59241 1.13296 1.85846 1.20988 0.96994 0.88549 0.94112 1.22036 1.00646 1.01717 0.92199 1.21289 0.97205 0.93883 0.98098 1.22178 1.05014 0.95782 0.98592 1.19616 0.94760 0.85860 0.88197 1.84782 1.36348 1.12817 1.94641 1.68490 1.08669 1.09707 1.27055 0.95034 0.94857 0.90022 0.93532 0.93093 0.90249 0.89529 0.91757 0.84092 0.84817 0.85075 0.74786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.59 10.38 -35.23 -0.37 -7.95 16 3 C 0.06 1.09 6.25 37.16 0.23 1.32 16 4 C 0.09 2.06 4.20 -4.04 -0.02 2.05 16 5 N -0.42 -10.65 2.09 -115.84 -0.24 -10.89 16 6 C -0.29 -7.75 7.92 -15.02 -0.12 -7.87 16 7 H 0.14 4.00 5.91 -52.49 -0.31 3.69 16 8 C 0.06 1.79 5.43 -17.45 -0.09 1.69 16 9 N -0.86 -24.54 13.95 55.50 0.77 -23.77 16 10 Si 0.87 21.31 24.68 -169.99 -4.20 17.12 16 11 H -0.27 -6.36 6.71 56.52 0.38 -5.98 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.26 -6.51 7.00 56.52 0.40 -6.12 16 14 C 0.51 12.40 7.57 -12.26 -0.09 12.30 16 15 O -0.60 -15.05 15.98 5.31 0.08 -14.96 16 16 C 0.13 2.94 6.66 -83.03 -0.55 2.39 16 17 C -0.14 -2.61 9.63 -39.03 -0.38 -2.99 16 18 C -0.08 -1.16 10.16 -39.35 -0.40 -1.56 16 19 C -0.19 -2.96 10.04 -39.15 -0.39 -3.36 16 20 C 0.30 5.67 7.74 -17.14 -0.13 5.54 16 21 O -0.48 -8.57 13.56 -18.70 -0.25 -8.82 16 22 N -0.42 -9.58 6.30 -9.89 -0.06 -9.64 16 23 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.85 3.34 -51.93 -0.17 1.68 16 29 H 0.09 1.85 7.53 -51.93 -0.39 1.46 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.14 2.38 7.65 -52.49 -0.40 1.98 16 32 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.40 5.08 9.06 45.56 0.41 5.49 16 LS Contribution 293.00 15.07 4.42 4.42 Total: -1.00 -33.28 293.00 -3.66 -36.94 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -2.99 Total: 6.42 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -0.83 Total: 11.14 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.47 Total: -44.30 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.53 Total: -31.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.20 Total: 17.12 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.28 -3.66 -36.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317040535.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.821 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds