Wall clock time and date at job start Mon Mar 30 2020 04:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99872 * 2 1 4 4 C 1.52999 * 109.46895 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47165 * 65.00052 * 4 3 2 6 6 C 1.36797 * 119.99999 * 264.48525 * 5 4 3 7 7 H 1.07999 * 120.00038 * 136.93199 * 6 5 4 8 8 C 1.39098 * 120.00209 * 316.94123 * 6 5 4 9 9 N 1.31332 * 120.00074 * 342.78226 * 8 6 5 10 10 Si 1.86799 * 120.00452 * 162.78404 * 8 6 5 11 11 H 1.48496 * 109.47146 * 89.99775 * 10 8 6 12 12 H 1.48500 * 109.47101 * 209.99912 * 10 8 6 13 13 H 1.48497 * 109.46758 * 329.99670 * 10 8 6 14 14 C 1.34777 * 120.00319 * 84.48810 * 5 4 3 15 15 O 1.21563 * 119.99748 * 4.16456 * 14 5 4 16 16 C 1.48011 * 120.00245 * 184.15777 * 14 5 4 17 17 C 1.40056 * 120.89872 * 330.00969 * 16 14 5 18 18 C 1.37926 * 119.12500 * 180.02562 * 17 16 14 19 19 N 1.31931 * 120.98529 * 0.02562 * 18 17 16 20 20 C 1.32193 * 121.99028 * 359.97438 * 19 18 17 21 21 O 1.35686 * 119.61947 * 180.28334 * 20 19 18 22 22 C 1.38847 * 120.76302 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.47093 * 60.00588 * 1 2 3 24 24 H 1.09001 * 109.46833 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47288 * 299.99944 * 1 2 3 26 26 H 1.09002 * 109.47485 * 59.99765 * 3 2 1 27 27 H 1.09001 * 109.46756 * 299.99841 * 3 2 1 28 28 H 1.08996 * 109.46973 * 304.99763 * 4 3 2 29 29 H 1.09005 * 109.46931 * 184.99735 * 4 3 2 30 30 H 0.96997 * 120.00651 * 180.02562 * 9 8 6 31 31 H 1.08001 * 120.43895 * 359.97438 * 17 16 14 32 32 H 1.08004 * 119.51062 * 179.97438 * 18 17 16 33 33 H 0.96707 * 113.99948 * 269.72337 * 21 20 19 34 34 H 1.07999 * 120.53623 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.2063 -0.7836 -1.3022 7 1 3.8595 -1.3587 -2.1480 8 6 4.8864 -1.4133 -0.2650 9 7 5.5957 -0.7030 0.5818 10 14 4.7909 -3.2693 -0.0765 11 1 5.8895 -3.9025 -0.8493 12 1 4.9240 -3.6286 1.3583 13 1 3.4833 -3.7522 -0.5884 14 6 4.1564 1.3206 -2.3516 15 8 4.0260 2.5275 -2.2875 16 6 4.5127 0.6820 -3.6385 17 6 5.2532 -0.5063 -3.6711 18 6 5.5653 -1.0696 -4.8908 19 7 5.1775 -0.5055 -6.0186 20 6 4.4774 0.6157 -6.0363 21 8 4.0987 1.1511 -7.2241 22 6 4.1205 1.2488 -4.8532 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8507 0.5685 0.8427 29 1 3.9785 2.1766 0.0902 30 1 6.0703 -1.1421 1.3049 31 1 5.5762 -0.9750 -2.7533 32 1 6.1364 -1.9857 -4.9231 33 1 4.7362 1.7770 -7.5945 34 1 3.5481 2.1645 -4.8720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317062162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:49 Heat of formation + Delta-G solvation = -67.014617 kcal Electronic energy + Delta-G solvation = -20590.692193 eV Core-core repulsion = 17297.135015 eV Total energy + Delta-G solvation = -3293.557179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.08403 -38.60245 -37.08840 -36.47416 -34.94712 -32.06760 -31.80629 -29.92100 -29.00786 -25.93948 -25.22571 -23.90979 -22.74605 -21.78970 -19.68343 -18.53820 -17.15551 -16.57777 -15.92794 -15.65268 -15.38643 -15.15393 -14.94998 -14.52006 -14.24208 -14.14367 -13.59176 -13.48079 -12.74843 -12.51081 -12.10810 -11.73215 -11.60668 -11.42785 -11.23673 -11.16110 -10.99758 -10.78814 -10.47787 -10.20281 -9.33128 -9.23692 -9.19704 -9.07023 -8.55013 -8.39131 -7.61134 -6.51861 -4.20933 1.45082 1.54323 3.06685 3.17676 3.23912 3.62765 3.94661 4.09914 4.33023 4.40380 4.57576 4.90212 5.21606 5.54605 5.57705 5.61944 5.67362 5.71776 5.90553 5.96510 6.00223 6.12627 6.16360 6.20656 6.45658 6.64320 6.89249 7.05137 7.09916 7.31370 7.68393 7.79203 7.85535 8.19803 8.34047 8.90159 9.27311 9.70914 10.50905 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.008062 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.289623 B = 3472.323400 C = 4372.086299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.410 5.410 6 C -0.334 4.334 7 H 0.093 0.907 8 C 0.051 3.949 9 N -0.855 5.855 10 Si 0.913 3.087 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.504 3.496 15 O -0.600 6.600 16 C -0.036 4.036 17 C -0.133 4.133 18 C 0.095 3.905 19 N -0.505 5.505 20 C 0.282 3.718 21 O -0.485 6.485 22 C -0.147 4.147 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.273 0.727 31 H 0.183 0.817 32 H 0.158 0.842 33 H 0.392 0.608 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -0.100 -3.022 4.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.027 4.027 4 C -0.004 4.004 5 N -0.126 5.126 6 C -0.462 4.462 7 H 0.110 0.890 8 C -0.157 4.157 9 N -0.490 5.490 10 Si 0.738 3.262 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.190 1.190 14 C 0.293 3.707 15 O -0.487 6.487 16 C -0.047 4.047 17 C -0.152 4.152 18 C -0.061 4.061 19 N -0.225 5.225 20 C 0.103 3.897 21 O -0.291 6.291 22 C -0.170 4.170 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.199 0.801 32 H 0.175 0.825 33 H 0.248 0.752 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.902 -0.403 -3.480 4.549 hybrid contribution -0.206 -0.027 0.854 0.879 sum -3.109 -0.430 -2.626 4.092 Atomic orbital electron populations 1.22656 0.83179 1.01864 0.98931 1.88120 1.17603 1.27639 1.95076 1.23043 0.96253 0.84476 0.98952 1.21434 0.89306 0.99265 0.90389 1.43109 1.54839 1.07428 1.07252 1.19395 1.35592 0.82290 1.08920 0.88963 1.25400 0.93814 1.00157 0.96296 1.69863 1.26112 1.36953 1.16045 0.86154 0.79234 0.82707 0.78062 1.19966 1.20604 1.18980 1.18201 0.81664 0.86056 0.84779 1.90623 1.57851 1.14010 1.86184 1.20362 0.95999 0.94454 0.93884 1.23558 0.95696 0.94641 1.01349 1.22507 0.97590 0.99404 0.86605 1.66885 1.11755 1.10845 1.32984 1.18880 0.95253 0.90688 0.84879 1.84787 1.46877 1.62363 1.35094 1.22120 1.02184 1.01364 0.91296 0.94918 0.90321 0.95045 0.93923 0.93987 0.87371 0.90684 0.91651 0.80053 0.82500 0.75191 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.50 10.44 -35.23 -0.37 -7.86 16 3 C 0.05 1.00 6.24 37.16 0.23 1.23 16 4 C 0.12 2.71 5.29 -4.04 -0.02 2.69 16 5 N -0.41 -9.89 2.44 -115.84 -0.28 -10.17 16 6 C -0.33 -7.93 5.84 -15.02 -0.09 -8.02 16 7 H 0.09 2.17 6.24 -52.49 -0.33 1.84 16 8 C 0.05 1.20 4.89 -17.45 -0.09 1.11 16 9 N -0.85 -21.07 11.70 55.50 0.65 -20.42 16 10 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 11 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 C 0.50 12.19 7.43 -12.25 -0.09 12.10 16 15 O -0.60 -15.53 16.44 5.31 0.09 -15.44 16 16 C -0.04 -0.77 5.60 -104.68 -0.59 -1.36 16 17 C -0.13 -2.60 7.88 -39.01 -0.31 -2.91 16 18 C 0.09 1.65 11.16 -17.62 -0.20 1.45 16 19 N -0.50 -9.30 10.36 -13.39 -0.14 -9.43 16 20 C 0.28 5.09 7.74 -17.17 -0.13 4.96 16 21 O -0.49 -7.44 13.56 -18.76 -0.25 -7.69 16 22 C -0.15 -2.86 9.63 -38.82 -0.37 -3.23 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.11 2.60 5.88 -51.93 -0.31 2.29 16 29 H 0.07 1.71 7.54 -51.93 -0.39 1.32 16 30 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 31 H 0.18 3.74 5.25 -52.49 -0.28 3.47 16 32 H 0.16 2.20 8.06 -52.48 -0.42 1.78 16 33 H 0.39 3.88 9.06 45.56 0.41 4.30 16 34 H 0.14 2.59 7.99 -52.49 -0.42 2.17 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -29.80 297.59 -4.37 -34.17 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -2.98 Total: 9.24 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.54 Total: 9.62 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.23 Total: -40.03 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.53 Total: -30.99 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.80 -4.37 -34.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317062162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.848 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds