Wall clock time and date at job start Mon Mar 30 2020 04:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99872 * 2 1 4 4 C 1.52999 * 109.46895 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47165 * 65.00052 * 4 3 2 6 6 C 1.36797 * 119.99999 * 264.48525 * 5 4 3 7 7 H 1.07999 * 120.00038 * 136.93199 * 6 5 4 8 8 C 1.39098 * 120.00209 * 316.94123 * 6 5 4 9 9 N 1.31332 * 120.00074 * 342.78226 * 8 6 5 10 10 Si 1.86799 * 120.00452 * 162.78404 * 8 6 5 11 11 H 1.48496 * 109.47146 * 89.99775 * 10 8 6 12 12 H 1.48500 * 109.47101 * 209.99912 * 10 8 6 13 13 H 1.48497 * 109.46758 * 329.99670 * 10 8 6 14 14 C 1.34777 * 120.00319 * 84.48810 * 5 4 3 15 15 O 1.21563 * 119.99748 * 4.16456 * 14 5 4 16 16 C 1.48011 * 120.00245 * 184.15777 * 14 5 4 17 17 C 1.40056 * 120.89872 * 330.00969 * 16 14 5 18 18 C 1.37926 * 119.12500 * 180.02562 * 17 16 14 19 19 N 1.31931 * 120.98529 * 0.02562 * 18 17 16 20 20 C 1.32193 * 121.99028 * 359.97438 * 19 18 17 21 21 O 1.35686 * 119.61947 * 180.28334 * 20 19 18 22 22 C 1.38847 * 120.76302 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.47093 * 60.00588 * 1 2 3 24 24 H 1.09001 * 109.46833 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47288 * 299.99944 * 1 2 3 26 26 H 1.09002 * 109.47485 * 59.99765 * 3 2 1 27 27 H 1.09001 * 109.46756 * 299.99841 * 3 2 1 28 28 H 1.08996 * 109.46973 * 304.99763 * 4 3 2 29 29 H 1.09005 * 109.46931 * 184.99735 * 4 3 2 30 30 H 0.96997 * 120.00651 * 180.02562 * 9 8 6 31 31 H 1.08001 * 120.43895 * 359.97438 * 17 16 14 32 32 H 1.08004 * 119.51062 * 179.97438 * 18 17 16 33 33 H 0.96707 * 113.99948 * 269.72337 * 21 20 19 34 34 H 1.07999 * 120.53623 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.2063 -0.7836 -1.3022 7 1 3.8595 -1.3587 -2.1480 8 6 4.8864 -1.4133 -0.2650 9 7 5.5957 -0.7030 0.5818 10 14 4.7909 -3.2693 -0.0765 11 1 5.8895 -3.9025 -0.8493 12 1 4.9240 -3.6286 1.3583 13 1 3.4833 -3.7522 -0.5884 14 6 4.1564 1.3206 -2.3516 15 8 4.0260 2.5275 -2.2875 16 6 4.5127 0.6820 -3.6385 17 6 5.2532 -0.5063 -3.6711 18 6 5.5653 -1.0696 -4.8908 19 7 5.1775 -0.5055 -6.0186 20 6 4.4774 0.6157 -6.0363 21 8 4.0987 1.1511 -7.2241 22 6 4.1205 1.2488 -4.8532 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8507 0.5685 0.8427 29 1 3.9785 2.1766 0.0902 30 1 6.0703 -1.1421 1.3049 31 1 5.5762 -0.9750 -2.7533 32 1 6.1364 -1.9857 -4.9231 33 1 4.7362 1.7770 -7.5945 34 1 3.5481 2.1645 -4.8720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317062162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:48 Heat of formation + Delta-G solvation = -90.710071 kcal Electronic energy + Delta-G solvation = -20591.719705 eV Core-core repulsion = 17297.135015 eV Total energy + Delta-G solvation = -3294.584691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62656 -40.27610 -38.60652 -37.84615 -36.77000 -33.63532 -33.61695 -31.42732 -30.58820 -27.34787 -26.98107 -25.49028 -24.21287 -23.41629 -21.38012 -20.12895 -18.74977 -18.14787 -17.49609 -17.21859 -16.84528 -16.74291 -16.51050 -16.15984 -15.86455 -15.68620 -15.19453 -14.95661 -14.45184 -13.96002 -13.66058 -13.39220 -13.16509 -12.95736 -12.77925 -12.66734 -12.57276 -12.39965 -12.10112 -11.84411 -11.11065 -10.88254 -10.75771 -10.55666 -10.23737 -9.83762 -9.45053 -8.31963 -6.06432 -0.11315 0.10644 1.46329 1.53676 1.64058 1.98029 2.29418 2.62195 2.73462 2.92130 2.96078 3.16950 3.85580 3.95378 4.10193 4.19997 4.21898 4.35415 4.48723 4.54872 4.57166 4.66658 4.72421 4.76951 4.82821 5.01975 5.24388 5.40003 5.45769 5.65199 5.93046 6.35740 6.36681 6.64763 6.92635 7.06943 7.43420 7.87670 8.72028 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.008062 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.289623 B = 3472.323400 C = 4372.086299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.062 3.938 4 C 0.117 3.883 5 N -0.417 5.417 6 C -0.340 4.340 7 H 0.094 0.906 8 C 0.019 3.981 9 N -0.885 5.885 10 Si 0.972 3.028 11 H -0.258 1.258 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.489 3.511 15 O -0.630 6.630 16 C -0.058 4.058 17 C -0.140 4.140 18 C 0.111 3.889 19 N -0.509 5.509 20 C 0.295 3.705 21 O -0.485 6.485 22 C -0.155 4.155 23 H 0.037 0.963 24 H 0.094 0.906 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.275 0.725 31 H 0.171 0.829 32 H 0.197 0.803 33 H 0.418 0.582 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -1.548 -4.045 5.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.016 4.016 4 C -0.006 4.006 5 N -0.132 5.132 6 C -0.467 4.467 7 H 0.111 0.889 8 C -0.186 4.186 9 N -0.521 5.521 10 Si 0.796 3.204 11 H -0.183 1.183 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.280 3.720 15 O -0.519 6.519 16 C -0.069 4.069 17 C -0.160 4.160 18 C -0.045 4.045 19 N -0.230 5.230 20 C 0.116 3.884 21 O -0.295 6.295 22 C -0.177 4.177 23 H 0.056 0.944 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.188 0.812 32 H 0.213 0.787 33 H 0.278 0.722 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.201 -1.839 -4.524 5.839 hybrid contribution -0.137 0.470 1.109 1.212 sum -3.338 -1.369 -3.416 4.968 Atomic orbital electron populations 1.22894 0.80529 1.03420 1.00280 1.88051 1.20546 1.27697 1.95335 1.22835 0.94206 0.84761 0.99752 1.21411 0.91510 0.98107 0.89616 1.43324 1.54549 1.07783 1.07568 1.19525 1.35774 0.82131 1.09281 0.88883 1.26071 0.93141 1.03728 0.95689 1.69951 1.26954 1.38553 1.16649 0.85247 0.79329 0.78097 0.77749 1.18305 1.20979 1.19282 1.18723 0.81445 0.85946 0.85932 1.90575 1.59293 1.15151 1.86875 1.20300 0.97716 0.95686 0.93195 1.23409 0.96250 0.94341 1.01986 1.23013 0.96342 0.99805 0.85294 1.67067 1.11926 1.10898 1.33066 1.18886 0.93921 0.90331 0.85242 1.84727 1.48033 1.63028 1.33723 1.22140 1.02693 1.01596 0.91281 0.94447 0.88736 0.92734 0.90973 0.95121 0.88836 0.91879 0.91500 0.81213 0.78676 0.72155 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.05 10.44 -148.98 -1.56 -17.61 16 3 C 0.06 2.47 6.24 71.98 0.45 2.92 16 4 C 0.12 5.47 5.29 86.38 0.46 5.92 16 5 N -0.42 -20.59 2.44 -638.67 -1.56 -22.15 16 6 C -0.34 -16.25 5.84 84.13 0.49 -15.75 16 7 H 0.09 4.38 6.24 -2.91 -0.02 4.36 16 8 C 0.02 0.87 4.89 84.97 0.42 1.28 16 9 N -0.89 -44.17 11.70 21.69 0.25 -43.92 16 10 Si 0.97 37.39 29.59 68.60 2.03 39.42 16 11 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 12 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 13 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 14 C 0.49 24.35 7.43 86.84 0.64 24.99 16 15 O -0.63 -33.75 16.44 -3.92 -0.06 -33.82 16 16 C -0.06 -2.51 5.60 -19.90 -0.11 -2.62 16 17 C -0.14 -5.38 7.88 22.64 0.18 -5.20 16 18 C 0.11 3.60 11.16 84.60 0.94 4.54 16 19 N -0.51 -17.40 10.36 -309.18 -3.20 -20.60 16 20 C 0.29 10.09 7.74 84.78 0.66 10.74 16 21 O -0.49 -13.61 13.56 -90.05 -1.22 -14.83 16 22 C -0.15 -5.93 9.63 22.76 0.22 -5.72 16 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 4.63 5.88 -2.39 -0.01 4.61 16 29 H 0.06 3.01 7.54 -2.38 -0.02 2.99 16 30 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 31 H 0.17 6.97 5.25 -2.91 -0.02 6.95 16 32 H 0.20 4.71 8.06 -2.91 -0.02 4.69 16 33 H 0.42 7.04 9.06 -74.05 -0.67 6.37 16 34 H 0.14 5.19 7.99 -2.91 -0.02 5.17 16 Total: -1.00 -63.98 297.59 0.75 -63.23 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.47 Total: 27.19 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 5.59 Total: 23.09 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -4.51 Total: -86.67 kcal Atomic # 8 Polarization: -63.41 SS G_CDS: -2.84 Total: -66.25 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -63.98 0.75 -63.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317062162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.481 kcal (2) G-P(sol) polarization free energy of solvation -63.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds