Wall clock time and date at job start Mon Mar 30 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47513 * 2 1 4 4 C 1.50700 * 109.47013 * 239.99776 * 2 1 3 5 5 H 1.07997 * 120.00070 * 240.00103 * 4 2 1 6 6 C 1.37882 * 119.99968 * 60.00316 * 4 2 1 7 7 N 1.31517 * 119.99600 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99853 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47304 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46898 * 120.00092 * 8 6 4 11 11 H 1.48507 * 109.46939 * 239.99610 * 8 6 4 12 12 N 1.46505 * 109.47063 * 120.00024 * 2 1 3 13 13 C 1.34773 * 119.99468 * 274.99661 * 12 2 1 14 14 O 1.21279 * 120.00982 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99397 * 180.02562 * 13 12 2 16 16 H 1.09006 * 109.47127 * 299.99663 * 15 13 12 17 17 C 1.52999 * 109.47345 * 60.00142 * 15 13 12 18 18 C 1.50702 * 109.46881 * 180.02562 * 15 13 12 19 19 N 1.31875 * 119.63587 * 299.99568 * 18 15 13 20 20 C 1.31844 * 121.74963 * 180.02562 * 19 18 15 21 21 C 1.38238 * 120.82205 * 359.97438 * 20 19 18 22 22 C 1.38591 * 119.18924 * 0.25778 * 21 20 19 23 23 C 1.38421 * 119.64066 * 119.97875 * 18 15 13 24 24 F 1.35106 * 120.44122 * 0.02562 * 23 18 15 25 25 H 1.09002 * 109.47139 * 60.00028 * 1 2 3 26 26 H 1.08998 * 109.47604 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46980 * 300.00660 * 1 2 3 28 28 H 0.97006 * 119.99327 * 180.02562 * 7 6 4 29 29 H 0.96993 * 119.99713 * 94.99845 * 12 2 1 30 30 H 1.08994 * 109.46896 * 179.97438 * 17 15 13 31 31 H 1.09002 * 109.46835 * 299.99880 * 17 15 13 32 32 H 1.09000 * 109.46606 * 60.00034 * 17 15 13 33 33 H 1.08004 * 119.58769 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.40263 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.80092 * 179.72215 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2871 -3.6037 10 1 1.1659 -1.5867 -4.8160 11 1 3.1466 -0.1875 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1585 2.4117 15 6 2.6499 -0.7285 3.5874 16 1 1.9776 -1.5508 3.8326 17 6 4.0526 -1.2785 3.3213 18 6 2.7000 0.2397 4.7412 19 7 3.4577 1.3157 4.6571 20 6 3.5331 2.1898 5.6413 21 6 2.8130 2.0076 6.8071 22 6 2.0085 0.8866 6.9364 23 6 1.9498 -0.0099 5.8774 24 9 1.1756 -1.1142 5.9575 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 0.7082 1.1608 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 4.4165 -1.7918 4.2114 31 1 4.0160 -1.9789 2.4869 32 1 4.7248 -0.4561 3.0763 33 1 4.1647 3.0595 5.5349 34 1 2.8801 2.7278 7.6092 35 1 1.4382 0.7161 7.8376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330964582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:27 Heat of formation + Delta-G solvation = -55.002089 kcal Electronic energy + Delta-G solvation = -20014.179372 eV Core-core repulsion = 16733.515886 eV Total energy + Delta-G solvation = -3280.663487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.03067 -40.32552 -38.67640 -34.84631 -34.04020 -32.40783 -31.99592 -30.01888 -28.48349 -25.25187 -25.04654 -23.54884 -22.81161 -20.67787 -19.23981 -17.81270 -17.52938 -17.00028 -16.18759 -15.92307 -15.41892 -15.17346 -14.52266 -14.37943 -13.99939 -13.55454 -13.37762 -13.24849 -13.00923 -12.53973 -12.41198 -11.96568 -11.91047 -11.56491 -11.18734 -11.04472 -10.89142 -10.67847 -10.26182 -10.20662 -9.92066 -9.51233 -9.04821 -8.99739 -8.73677 -8.51187 -7.83943 -6.08981 -4.17871 0.86990 1.06333 3.25950 3.33498 3.36290 3.45710 3.56071 3.91667 4.17905 4.24899 4.39823 4.56723 4.63460 4.83493 5.17686 5.23224 5.30294 5.32228 5.49122 5.68152 5.72461 5.83050 5.87756 6.02150 6.30560 6.57058 6.86780 7.00887 7.19761 7.51754 7.61340 7.73583 7.91877 7.96288 8.18941 8.72222 8.82857 9.19482 9.49797 10.97122 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035104 B = 0.004422 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.442535 B = 6330.240885 C = 6377.616907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.514 3.486 14 O -0.541 6.541 15 C -0.072 4.072 16 H 0.107 0.893 17 C -0.133 4.133 18 C 0.138 3.862 19 N -0.426 5.426 20 C 0.094 3.906 21 C -0.153 4.153 22 C -0.111 4.111 23 C 0.047 3.953 24 F -0.130 7.130 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.013 0.987 28 H 0.263 0.737 29 H 0.388 0.612 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -2.551 17.769 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.356 5.356 13 C 0.297 3.703 14 O -0.418 6.418 15 C -0.094 4.094 16 H 0.125 0.875 17 C -0.191 4.191 18 C -0.002 4.002 19 N -0.134 5.134 20 C -0.064 4.064 21 C -0.173 4.173 22 C -0.138 4.138 23 C 0.026 3.974 24 F -0.109 7.109 25 H 0.108 0.892 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.220 0.780 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.180 0.820 34 H 0.160 0.840 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.370 -1.466 16.863 17.481 hybrid contribution -0.389 -1.158 -0.012 1.221 sum 3.982 -2.624 16.850 17.512 Atomic orbital electron populations 1.22079 0.98588 0.99060 1.00816 1.18734 0.90910 0.94024 0.79970 0.93379 1.21261 1.32257 1.13138 0.90302 0.92003 1.24895 0.94849 0.94962 0.99059 1.69924 1.35989 1.22545 1.23698 0.86394 0.78575 0.79527 0.82599 1.19723 1.20921 1.20902 1.46454 1.65352 1.13472 1.10332 1.19890 0.78779 0.87391 0.84196 1.90667 1.50545 1.15733 1.84871 1.20370 1.00605 0.96523 0.91917 0.87456 1.21679 0.93747 1.01650 1.02016 1.20802 0.92889 0.93867 0.92663 1.67514 1.17013 1.00649 1.28190 1.22876 0.97177 0.97768 0.88534 1.22053 0.97514 0.97770 0.99966 1.21560 0.99709 0.94065 0.98418 1.18556 0.95392 0.86543 0.96921 1.91495 1.72653 1.50260 1.96486 0.89177 0.95484 0.96785 0.92683 0.77971 0.92196 0.91047 0.90872 0.82050 0.83978 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.27 6.92 2.56 -69.08 -0.18 6.74 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.27 11.32 55.43 0.63 -24.64 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.71 -15.18 4.96 -54.93 -0.27 -15.46 16 13 C 0.51 10.79 7.07 -10.98 -0.08 10.72 16 14 O -0.54 -13.60 15.19 5.56 0.08 -13.52 16 15 C -0.07 -1.15 2.95 -92.92 -0.27 -1.42 16 16 H 0.11 1.51 7.11 -51.93 -0.37 1.14 16 17 C -0.13 -1.79 8.99 37.16 0.33 -1.45 16 18 C 0.14 2.20 4.98 -82.51 -0.41 1.79 16 19 N -0.43 -6.96 9.28 -9.42 -0.09 -7.04 16 20 C 0.09 1.16 11.18 -17.55 -0.20 0.97 16 21 C -0.15 -1.52 10.11 -39.45 -0.40 -1.91 16 22 C -0.11 -1.21 10.16 -39.21 -0.40 -1.61 16 23 C 0.05 0.66 7.28 -39.28 -0.29 0.38 16 24 F -0.13 -1.79 16.21 2.25 0.04 -1.76 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.39 7.14 7.96 -40.82 -0.32 6.82 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.88 7.57 -51.93 -0.39 0.48 16 32 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 33 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -32.89 305.35 -6.26 -39.15 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.29 Total: 4.95 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.94 Total: -2.09 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.27 Total: -47.14 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.89 -6.26 -39.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330964582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.853 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds