Wall clock time and date at job start Mon Mar 30 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47513 * 2 1 4 4 C 1.50700 * 109.47013 * 239.99776 * 2 1 3 5 5 H 1.07997 * 120.00070 * 240.00103 * 4 2 1 6 6 C 1.37882 * 119.99968 * 60.00316 * 4 2 1 7 7 N 1.31517 * 119.99600 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99853 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47304 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46898 * 120.00092 * 8 6 4 11 11 H 1.48507 * 109.46939 * 239.99610 * 8 6 4 12 12 N 1.46505 * 109.47063 * 120.00024 * 2 1 3 13 13 C 1.34773 * 119.99468 * 274.99661 * 12 2 1 14 14 O 1.21279 * 120.00982 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99397 * 180.02562 * 13 12 2 16 16 H 1.09006 * 109.47127 * 299.99663 * 15 13 12 17 17 C 1.52999 * 109.47345 * 60.00142 * 15 13 12 18 18 C 1.50702 * 109.46881 * 180.02562 * 15 13 12 19 19 N 1.31875 * 119.63587 * 299.99568 * 18 15 13 20 20 C 1.31844 * 121.74963 * 180.02562 * 19 18 15 21 21 C 1.38238 * 120.82205 * 359.97438 * 20 19 18 22 22 C 1.38591 * 119.18924 * 0.25778 * 21 20 19 23 23 C 1.38421 * 119.64066 * 119.97875 * 18 15 13 24 24 F 1.35106 * 120.44122 * 0.02562 * 23 18 15 25 25 H 1.09002 * 109.47139 * 60.00028 * 1 2 3 26 26 H 1.08998 * 109.47604 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46980 * 300.00660 * 1 2 3 28 28 H 0.97006 * 119.99327 * 180.02562 * 7 6 4 29 29 H 0.96993 * 119.99713 * 94.99845 * 12 2 1 30 30 H 1.08994 * 109.46896 * 179.97438 * 17 15 13 31 31 H 1.09002 * 109.46835 * 299.99880 * 17 15 13 32 32 H 1.09000 * 109.46606 * 60.00034 * 17 15 13 33 33 H 1.08004 * 119.58769 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.40263 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.80092 * 179.72215 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2871 -3.6037 10 1 1.1659 -1.5867 -4.8160 11 1 3.1466 -0.1875 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1585 2.4117 15 6 2.6499 -0.7285 3.5874 16 1 1.9776 -1.5508 3.8326 17 6 4.0526 -1.2785 3.3213 18 6 2.7000 0.2397 4.7412 19 7 3.4577 1.3157 4.6571 20 6 3.5331 2.1898 5.6413 21 6 2.8130 2.0076 6.8071 22 6 2.0085 0.8866 6.9364 23 6 1.9498 -0.0099 5.8774 24 9 1.1756 -1.1142 5.9575 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 0.7082 1.1608 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 4.4165 -1.7918 4.2114 31 1 4.0160 -1.9789 2.4869 32 1 4.7248 -0.4561 3.0763 33 1 4.1647 3.0595 5.5349 34 1 2.8801 2.7278 7.6092 35 1 1.4382 0.7161 7.8376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330964582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:24 Heat of formation + Delta-G solvation = -77.555987 kcal Electronic energy + Delta-G solvation = -20015.157383 eV Core-core repulsion = 16733.515886 eV Total energy + Delta-G solvation = -3281.641497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.04321 -41.46405 -40.21905 -36.75259 -35.35714 -34.24812 -33.08277 -31.30786 -30.18525 -27.35557 -26.18883 -24.60708 -24.12425 -22.38776 -20.97815 -19.08211 -18.77246 -18.18787 -17.56683 -17.33187 -16.91120 -16.74133 -16.09144 -15.81870 -14.95661 -14.93060 -14.85890 -14.52243 -14.36384 -14.03197 -13.71888 -13.43897 -13.29975 -12.98907 -12.97489 -12.80920 -12.69734 -12.29634 -12.27352 -12.10121 -11.10025 -10.86920 -10.71995 -10.58587 -10.42017 -9.85438 -9.73540 -8.17331 -6.34931 -0.09859 0.16472 1.44970 1.45673 1.58240 1.81800 2.32279 2.49285 2.81333 2.97777 3.13285 3.20298 3.57199 3.76040 3.99847 4.00328 4.14323 4.20907 4.50935 4.66478 4.73415 4.79800 4.86019 4.89951 4.92507 5.03043 5.08343 5.22499 5.42702 5.61371 5.66136 5.68238 5.90736 6.09243 6.73086 6.93346 6.97875 7.32595 7.56063 8.89499 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035104 B = 0.004422 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.442535 B = 6330.240885 C = 6377.616907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H -0.005 1.005 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.703 5.703 13 C 0.510 3.490 14 O -0.588 6.588 15 C -0.062 4.062 16 H 0.127 0.873 17 C -0.126 4.126 18 C 0.104 3.896 19 N -0.470 5.470 20 C 0.078 3.922 21 C -0.132 4.132 22 C -0.106 4.106 23 C 0.033 3.967 24 F -0.134 7.134 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.007 0.993 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.184 0.816 34 H 0.188 0.812 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 -3.816 19.396 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.013 0.987 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.353 5.353 13 C 0.296 3.704 14 O -0.468 6.468 15 C -0.084 4.084 16 H 0.144 0.856 17 C -0.184 4.184 18 C -0.035 4.035 19 N -0.178 5.178 20 C -0.080 4.080 21 C -0.151 4.151 22 C -0.132 4.132 23 C 0.011 3.989 24 F -0.112 7.112 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.201 0.799 34 H 0.206 0.794 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.049 -2.780 18.514 19.391 hybrid contribution -0.592 -0.645 -0.412 0.968 sum 4.457 -3.424 18.102 18.954 Atomic orbital electron populations 1.21896 0.98432 0.99469 0.99355 1.18327 0.90992 0.91818 0.82002 0.98741 1.21575 1.32487 1.13522 0.90671 0.90676 1.25836 0.94855 0.95579 1.02420 1.70076 1.37112 1.24077 1.24528 0.85255 0.78081 0.78516 0.78219 1.18194 1.20396 1.21008 1.46211 1.65382 1.14157 1.09508 1.20807 0.77396 0.87001 0.85232 1.90630 1.52340 1.18080 1.85763 1.20321 1.01990 0.96680 0.89414 0.85562 1.21662 0.91827 1.01151 1.03732 1.20780 0.94767 0.94518 0.93454 1.67427 1.18333 1.01716 1.30347 1.23429 0.97949 0.97780 0.88842 1.22519 0.95067 0.97715 0.99837 1.22034 0.99429 0.93211 0.98558 1.18741 0.95418 0.87246 0.97480 1.91480 1.72712 1.50517 1.96520 0.91456 0.93922 0.97344 0.92581 0.75990 0.89420 0.89981 0.92892 0.79914 0.79444 0.80264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.00 9.26 71.98 0.67 -6.34 16 2 C 0.27 14.67 2.56 44.24 0.11 14.78 16 3 H -0.01 -0.34 7.58 -2.38 -0.02 -0.36 16 4 C -0.54 -29.42 8.73 25.60 0.22 -29.20 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 8 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 9 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 N -0.70 -30.68 4.96 -446.08 -2.21 -32.90 16 13 C 0.51 21.97 7.07 87.66 0.62 22.59 16 14 O -0.59 -30.96 15.19 -3.03 -0.05 -31.01 16 15 C -0.06 -1.97 2.95 -12.28 -0.04 -2.01 16 16 H 0.13 3.44 7.11 -2.38 -0.02 3.43 16 17 C -0.13 -3.28 8.99 71.98 0.65 -2.63 16 18 C 0.10 3.29 4.98 42.60 0.21 3.51 16 19 N -0.47 -15.38 9.28 -183.71 -1.71 -17.09 16 20 C 0.08 1.81 11.18 84.69 0.95 2.76 16 21 C -0.13 -2.17 10.11 22.35 0.23 -1.95 16 22 C -0.11 -1.99 10.16 22.51 0.23 -1.76 16 23 C 0.03 0.87 7.28 22.47 0.16 1.03 16 24 F -0.13 -3.49 16.21 44.97 0.73 -2.76 16 25 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 26 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 29 H 0.40 14.71 7.96 -92.71 -0.74 13.98 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.90 7.57 -2.39 -0.02 1.89 16 32 H 0.05 1.59 8.04 -2.39 -0.02 1.57 16 33 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -74.86 305.35 3.87 -70.99 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.37 Total: 19.88 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 4.46 Total: 1.93 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -3.68 Total: -103.58 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.05 Total: -31.01 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.73 Total: -2.76 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -74.86 3.87 -70.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330964582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.566 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds