Wall clock time and date at job start Mon Mar 30 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47068 * 2 1 4 4 C 1.50692 * 109.47516 * 120.00774 * 2 1 3 5 5 O 1.21280 * 120.00237 * 120.00000 * 4 2 1 6 6 N 1.34782 * 119.99856 * 299.99672 * 4 2 1 7 7 C 1.46495 * 120.00063 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.47114 * 324.99970 * 7 6 4 9 9 C 1.53004 * 109.47166 * 85.00333 * 7 6 4 10 10 C 1.50703 * 109.47042 * 205.00017 * 7 6 4 11 11 H 1.07999 * 119.99944 * 0.02562 * 10 7 6 12 12 C 1.37876 * 119.99957 * 179.97438 * 10 7 6 13 13 N 1.31517 * 120.00300 * 179.97438 * 12 10 7 14 14 Si 1.86800 * 119.99891 * 0.02562 * 12 10 7 15 15 H 1.48503 * 109.47364 * 90.00056 * 14 12 10 16 16 H 1.48504 * 109.47157 * 209.99832 * 14 12 10 17 17 H 1.48499 * 109.47447 * 329.99484 * 14 12 10 18 18 C 1.50702 * 109.46787 * 240.00712 * 2 1 3 19 19 N 1.31875 * 119.63587 * 299.99438 * 18 2 1 20 20 C 1.31844 * 121.74963 * 180.02562 * 19 18 2 21 21 C 1.38238 * 120.82205 * 359.97438 * 20 19 18 22 22 C 1.38591 * 119.18924 * 0.25778 * 21 20 19 23 23 C 1.38421 * 119.64066 * 119.97745 * 18 2 1 24 24 F 1.35106 * 120.44122 * 0.02562 * 23 18 2 25 25 H 1.09002 * 109.46509 * 299.99398 * 1 2 3 26 26 H 1.09001 * 109.47476 * 59.99180 * 1 2 3 27 27 H 1.08996 * 109.46969 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99845 * 0.02562 * 6 4 2 29 29 H 1.08999 * 109.47140 * 299.99796 * 9 7 6 30 30 H 1.09001 * 109.47400 * 59.99812 * 9 7 6 31 31 H 1.09001 * 109.47090 * 180.02562 * 9 7 6 32 32 H 0.97000 * 120.00232 * 179.97438 * 13 12 10 33 33 H 1.08004 * 119.58769 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.40263 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.80092 * 179.72215 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1189 6 7 1.7069 -0.2502 2.4545 7 6 2.1958 -0.9405 3.6505 8 1 2.2328 -2.0133 3.4612 9 6 3.5982 -0.4345 3.9941 10 6 1.2660 -0.6659 4.8043 11 1 0.3976 -0.0400 4.6609 12 6 1.5235 -1.2144 6.0428 13 7 0.7124 -0.9744 7.0499 14 14 3.0251 -2.2975 6.2907 15 1 4.1797 -1.4572 6.6984 16 1 2.7435 -3.2993 7.3501 17 1 3.3460 -2.9971 5.0207 18 6 2.0323 -0.7103 -1.2306 19 7 1.7093 -1.9729 -1.4322 20 6 2.1259 -2.6345 -2.4938 21 6 2.9233 -2.0219 -3.4424 22 6 3.2888 -0.6969 -3.2645 23 6 2.8272 -0.0302 -2.1370 24 9 3.1547 1.2633 -1.9247 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.1489 0.5383 2.5436 29 1 4.2707 -0.6331 3.1596 30 1 3.5612 0.6383 4.1835 31 1 3.9621 -0.9485 4.8838 32 1 0.8934 -1.3606 7.9211 33 1 1.8400 -3.6678 -2.6243 34 1 3.2611 -2.5704 -4.3093 35 1 3.9145 -0.1940 -3.9869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330964583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:30 Heat of formation + Delta-G solvation = -70.981111 kcal Electronic energy + Delta-G solvation = -20091.167998 eV Core-core repulsion = 16809.811609 eV Total energy + Delta-G solvation = -3281.356389 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.04206 -41.49859 -40.29424 -36.89029 -35.38335 -34.35446 -33.11898 -31.80878 -30.48973 -27.24615 -26.21430 -24.64280 -24.16880 -22.38440 -21.08041 -19.19028 -18.78005 -18.25632 -17.85493 -17.35006 -17.08092 -16.75805 -16.04707 -15.95980 -15.10582 -14.93767 -14.90199 -14.80093 -14.44486 -14.14468 -14.04932 -13.66118 -13.46230 -13.36346 -13.13314 -12.88635 -12.79233 -12.29053 -12.15303 -11.62726 -11.29233 -10.88319 -10.87219 -10.72061 -10.43510 -9.89218 -9.83863 -8.38465 -6.43893 -0.10233 0.16121 1.25709 1.34182 1.43865 1.74023 2.25467 2.32353 2.75807 2.96698 2.97792 3.18970 3.56013 3.75529 3.92607 4.00228 4.13118 4.19542 4.42716 4.48887 4.55440 4.66154 4.70083 4.78574 4.85072 4.92075 4.98031 5.03673 5.21822 5.30953 5.42018 5.64048 5.66067 6.13818 6.57310 6.84991 6.94858 7.19000 7.43847 8.76781 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032030 B = 0.004834 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.982347 B = 5790.333287 C = 5938.250207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 H 0.129 0.871 4 C 0.514 3.486 5 O -0.581 6.581 6 N -0.699 5.699 7 C 0.243 3.757 8 H 0.019 0.981 9 C -0.154 4.154 10 C -0.531 4.531 11 H 0.059 0.941 12 C 0.031 3.969 13 N -0.932 5.932 14 Si 0.937 3.063 15 H -0.259 1.259 16 H -0.291 1.291 17 H -0.267 1.267 18 C 0.104 3.896 19 N -0.470 5.470 20 C 0.079 3.921 21 C -0.132 4.132 22 C -0.106 4.106 23 C 0.034 3.966 24 F -0.133 7.133 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.407 0.593 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.271 0.729 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 2.302 -22.933 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.083 4.083 3 H 0.147 0.853 4 C 0.300 3.700 5 O -0.461 6.461 6 N -0.348 5.348 7 C 0.138 3.862 8 H 0.037 0.963 9 C -0.212 4.212 10 C -0.569 4.569 11 H 0.077 0.923 12 C -0.169 4.169 13 N -0.571 5.571 14 Si 0.765 3.235 15 H -0.184 1.184 16 H -0.218 1.218 17 H -0.192 1.192 18 C -0.035 4.035 19 N -0.178 5.178 20 C -0.079 4.079 21 C -0.151 4.151 22 C -0.133 4.133 23 C 0.013 3.987 24 F -0.112 7.112 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.243 0.757 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.201 0.799 34 H 0.205 0.795 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.840 1.207 -22.172 22.534 hybrid contribution 0.805 0.419 0.348 0.972 sum 4.645 1.625 -21.823 22.371 Atomic orbital electron populations 1.21674 0.89608 1.03111 1.04197 1.20301 0.99942 0.99935 0.88171 0.85330 1.20761 0.79871 0.84247 0.85075 1.90629 1.40212 1.28025 1.87280 1.45966 1.52305 1.31680 1.04886 1.18743 0.91736 0.92489 0.83213 0.96343 1.22340 0.97670 1.01991 0.99239 1.21239 1.10166 1.31944 0.93593 0.92267 1.25514 0.98992 0.96862 0.95500 1.69968 1.39101 1.45880 1.02170 0.86032 0.80457 0.79193 0.77838 1.18448 1.21797 1.19181 1.20746 0.96338 0.91146 0.95276 1.67429 1.22300 1.06768 1.21267 1.23418 0.94471 1.01369 0.88652 1.22517 0.96999 0.94133 1.01465 1.22033 0.99385 0.95818 0.96015 1.18724 1.01166 0.80370 0.98470 1.91484 1.91008 1.33828 1.94895 0.90229 0.89446 0.92789 0.75691 0.93950 0.91415 0.94061 0.92020 0.79917 0.79532 0.80349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.99 71.98 0.65 -2.59 16 2 C -0.06 -1.83 2.95 -12.29 -0.04 -1.87 16 3 H 0.13 3.25 7.12 -2.38 -0.02 3.23 16 4 C 0.51 20.46 7.07 87.65 0.62 21.08 16 5 O -0.58 -27.87 15.19 -3.03 -0.05 -27.91 16 6 N -0.70 -28.61 4.96 -446.10 -2.21 -30.82 16 7 C 0.24 11.95 2.15 44.25 0.10 12.05 16 8 H 0.02 1.03 6.63 -2.39 -0.02 1.02 16 9 C -0.15 -6.95 8.96 71.98 0.65 -6.31 16 10 C -0.53 -29.46 9.31 25.60 0.24 -29.22 16 11 H 0.06 3.46 7.98 -2.91 -0.02 3.44 16 12 C 0.03 1.78 5.45 84.65 0.46 2.25 16 13 N -0.93 -56.33 13.96 21.45 0.30 -56.03 16 14 Si 0.94 45.67 24.37 68.60 1.67 47.34 16 15 H -0.26 -11.81 6.87 99.48 0.68 -11.12 16 16 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 17 H -0.27 -13.12 6.53 99.48 0.65 -12.47 16 18 C 0.10 3.08 4.98 42.60 0.21 3.29 16 19 N -0.47 -14.38 9.28 -183.71 -1.71 -16.09 16 20 C 0.08 1.69 11.18 84.69 0.95 2.63 16 21 C -0.13 -1.96 10.11 22.35 0.23 -1.74 16 22 C -0.11 -1.83 10.16 22.51 0.23 -1.60 16 23 C 0.03 0.84 7.28 22.47 0.16 1.01 16 24 F -0.13 -3.26 16.21 44.97 0.73 -2.53 16 25 H 0.08 1.86 7.56 -2.39 -0.02 1.84 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.57 8.03 -2.39 -0.02 1.55 16 28 H 0.41 14.43 7.96 -92.71 -0.74 13.70 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.04 1.89 3.27 -2.39 -0.01 1.88 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 33 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -74.16 298.53 3.48 -70.67 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.30 Total: 16.39 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.45 Total: -1.02 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.62 Total: -102.94 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.73 Total: -2.53 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.34 kcal Total: -74.16 3.48 -70.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330964583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.310 kcal (2) G-P(sol) polarization free energy of solvation -74.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds