Wall clock time and date at job start Mon Mar 30 2020 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46786 * 2 1 4 4 C 1.50691 * 109.47304 * 120.00259 * 2 1 3 5 5 H 1.07999 * 119.99884 * 120.00014 * 4 2 1 6 6 C 1.37878 * 120.00042 * 299.99924 * 4 2 1 7 7 N 1.31512 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00115 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47046 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47424 * 120.00051 * 8 6 4 11 11 H 1.48497 * 109.46977 * 240.00031 * 8 6 4 12 12 N 1.46500 * 109.47006 * 240.00391 * 2 1 3 13 13 C 1.34777 * 119.99750 * 84.99485 * 12 2 1 14 14 O 1.21275 * 120.00643 * 0.02562 * 13 12 2 15 15 C 1.50708 * 119.99487 * 180.02562 * 13 12 2 16 16 H 1.08996 * 109.46993 * 299.99601 * 15 13 12 17 17 C 1.52997 * 109.47141 * 60.00428 * 15 13 12 18 18 C 1.50706 * 109.46685 * 180.02562 * 15 13 12 19 19 N 1.31869 * 119.63488 * 299.99582 * 18 15 13 20 20 C 1.31844 * 121.74692 * 180.02562 * 19 18 15 21 21 C 1.38233 * 120.82339 * 0.02562 * 20 19 18 22 22 C 1.38598 * 119.18859 * 359.97438 * 21 20 19 23 23 C 1.38421 * 119.63458 * 119.73310 * 18 15 13 24 24 F 1.35101 * 120.44285 * 359.96978 * 23 18 15 25 25 H 1.08994 * 109.47183 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47204 * 299.99587 * 1 2 3 27 27 H 1.09002 * 109.47355 * 59.99796 * 1 2 3 28 28 H 0.97001 * 120.00093 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99986 * 265.00087 * 12 2 1 30 30 H 1.09002 * 109.47153 * 299.99670 * 17 15 13 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 15 13 32 32 H 1.09004 * 109.47261 * 59.99842 * 17 15 13 33 33 H 1.08004 * 119.58925 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.40998 * 180.02562 * 21 20 19 35 35 H 1.07995 * 120.79893 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1196 4.0078 9 1 3.1476 -2.2864 3.6036 10 1 3.1474 -0.1859 4.8160 11 1 1.1680 -1.5867 4.8164 12 7 2.0184 -0.6905 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6487 -0.7286 -3.5878 16 1 3.6479 -1.1211 -3.3988 17 6 1.7042 -1.8821 -3.9315 18 6 2.7000 0.2400 -4.7412 19 7 1.5942 0.8368 -5.1412 20 6 1.5911 1.6908 -6.1457 21 6 2.7582 1.9932 -6.8219 22 6 3.9419 1.3867 -6.4318 23 6 3.9083 0.4975 -5.3656 24 9 5.0387 -0.1127 -4.9472 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.7082 1.1607 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 1.6675 -2.5826 -3.0972 31 1 2.0669 -2.3957 -4.8219 32 1 0.7050 -1.4896 -4.1206 33 1 0.6650 2.1593 -6.4445 34 1 2.7481 2.6940 -7.6435 35 1 4.8688 1.6043 -6.9416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330964584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:36 Heat of formation + Delta-G solvation = -55.013982 kcal Electronic energy + Delta-G solvation = -20017.355394 eV Core-core repulsion = 16736.691392 eV Total energy + Delta-G solvation = -3280.664002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.02244 -40.32652 -38.67709 -34.84266 -34.04449 -32.40917 -31.99617 -30.01271 -28.49766 -25.21548 -25.07192 -23.54793 -22.80074 -20.70773 -19.21514 -17.81304 -17.51814 -17.00848 -16.18909 -15.91599 -15.45759 -15.15368 -14.49041 -14.31937 -14.00936 -13.71103 -13.43759 -13.18072 -12.89450 -12.54830 -12.34757 -12.16214 -11.81709 -11.56903 -11.17589 -11.05657 -10.90904 -10.64663 -10.26256 -10.19974 -9.91869 -9.51825 -9.04851 -8.99300 -8.73559 -8.50967 -7.83854 -6.09082 -4.18140 0.87073 1.06360 3.25700 3.33309 3.36126 3.45774 3.55890 3.92140 4.17421 4.24766 4.40341 4.56740 4.63380 4.83599 5.17399 5.22845 5.30126 5.31203 5.48985 5.68211 5.72315 5.82492 5.86478 6.01079 6.27871 6.56977 6.88673 7.04184 7.21237 7.52367 7.61724 7.73809 7.91335 7.97007 8.19563 8.72264 8.82712 9.19524 9.49634 10.96930 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.004530 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.601313 B = 6179.041309 C = 6432.165518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.514 3.486 14 O -0.541 6.541 15 C -0.072 4.072 16 H 0.108 0.892 17 C -0.133 4.133 18 C 0.138 3.862 19 N -0.427 5.427 20 C 0.094 3.906 21 C -0.153 4.153 22 C -0.111 4.111 23 C 0.048 3.952 24 F -0.130 7.130 25 H 0.026 0.974 26 H 0.089 0.911 27 H 0.015 0.985 28 H 0.263 0.737 29 H 0.388 0.612 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 -2.628 -17.868 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.356 5.356 13 C 0.297 3.703 14 O -0.418 6.418 15 C -0.094 4.094 16 H 0.126 0.874 17 C -0.190 4.190 18 C -0.003 4.003 19 N -0.134 5.134 20 C -0.064 4.064 21 C -0.173 4.173 22 C -0.138 4.138 23 C 0.027 3.973 24 F -0.108 7.108 25 H 0.045 0.955 26 H 0.107 0.893 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.220 0.780 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.842 -1.852 -17.274 17.604 hybrid contribution 1.491 -0.675 0.504 1.713 sum 4.333 -2.527 -16.769 17.504 Atomic orbital electron populations 1.22060 0.98430 0.99068 1.00877 1.18729 0.91062 0.93902 0.79929 0.93526 1.21267 1.32282 1.13165 0.90338 0.92023 1.24892 0.94843 0.94961 0.99051 1.69920 1.35965 1.22532 1.23702 0.86400 0.78592 0.79527 0.82609 1.19725 1.20915 1.20893 1.46457 1.65382 1.13482 1.10295 1.19888 0.78936 0.87402 0.84029 1.90666 1.50506 1.15892 1.84753 1.20368 1.02638 0.95059 0.91374 0.87390 1.21675 0.99647 0.95820 1.01908 1.20799 0.87459 0.96253 0.95742 1.67506 1.28590 1.06273 1.11032 1.22865 0.98429 0.94194 0.90914 1.22050 0.92654 1.00828 1.01755 1.21565 1.00357 0.95903 0.95931 1.18556 0.83285 0.97663 0.97827 1.91498 1.48718 1.81268 1.89362 0.95510 0.89270 0.96556 0.92677 0.77970 0.91117 0.92156 0.90943 0.82071 0.83982 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.27 6.93 2.56 -69.08 -0.18 6.75 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.71 -15.19 4.96 -54.93 -0.27 -15.46 16 13 C 0.51 10.79 7.07 -10.98 -0.08 10.71 16 14 O -0.54 -13.60 15.19 5.56 0.08 -13.51 16 15 C -0.07 -1.15 2.95 -92.92 -0.27 -1.43 16 16 H 0.11 1.54 7.11 -51.93 -0.37 1.17 16 17 C -0.13 -1.74 8.99 37.16 0.33 -1.41 16 18 C 0.14 2.20 4.98 -82.51 -0.41 1.79 16 19 N -0.43 -6.91 9.28 -9.42 -0.09 -7.00 16 20 C 0.09 1.15 11.18 -17.55 -0.20 0.95 16 21 C -0.15 -1.51 10.11 -39.45 -0.40 -1.91 16 22 C -0.11 -1.22 10.16 -39.21 -0.40 -1.61 16 23 C 0.05 0.68 7.28 -39.28 -0.29 0.39 16 24 F -0.13 -1.81 16.20 2.25 0.04 -1.78 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.39 7.14 7.96 -40.82 -0.32 6.82 16 30 H 0.07 0.84 7.57 -51.93 -0.39 0.45 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 33 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -32.92 305.35 -6.26 -39.18 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.29 Total: 4.85 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.94 Total: -2.07 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.27 Total: -47.10 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.92 -6.26 -39.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330964584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.834 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds