Wall clock time and date at job start Mon Mar 30 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46786 * 2 1 4 4 C 1.50691 * 109.47304 * 120.00259 * 2 1 3 5 5 H 1.07999 * 119.99884 * 120.00014 * 4 2 1 6 6 C 1.37878 * 120.00042 * 299.99924 * 4 2 1 7 7 N 1.31512 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00115 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47046 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47424 * 120.00051 * 8 6 4 11 11 H 1.48497 * 109.46977 * 240.00031 * 8 6 4 12 12 N 1.46500 * 109.47006 * 240.00391 * 2 1 3 13 13 C 1.34777 * 119.99750 * 84.99485 * 12 2 1 14 14 O 1.21275 * 120.00643 * 0.02562 * 13 12 2 15 15 C 1.50708 * 119.99487 * 180.02562 * 13 12 2 16 16 H 1.08996 * 109.46993 * 299.99601 * 15 13 12 17 17 C 1.52997 * 109.47141 * 60.00428 * 15 13 12 18 18 C 1.50706 * 109.46685 * 180.02562 * 15 13 12 19 19 N 1.31869 * 119.63488 * 299.99582 * 18 15 13 20 20 C 1.31844 * 121.74692 * 180.02562 * 19 18 15 21 21 C 1.38233 * 120.82339 * 0.02562 * 20 19 18 22 22 C 1.38598 * 119.18859 * 359.97438 * 21 20 19 23 23 C 1.38421 * 119.63458 * 119.73310 * 18 15 13 24 24 F 1.35101 * 120.44285 * 359.96978 * 23 18 15 25 25 H 1.08994 * 109.47183 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47204 * 299.99587 * 1 2 3 27 27 H 1.09002 * 109.47355 * 59.99796 * 1 2 3 28 28 H 0.97001 * 120.00093 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99986 * 265.00087 * 12 2 1 30 30 H 1.09002 * 109.47153 * 299.99670 * 17 15 13 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 15 13 32 32 H 1.09004 * 109.47261 * 59.99842 * 17 15 13 33 33 H 1.08004 * 119.58925 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.40998 * 180.02562 * 21 20 19 35 35 H 1.07995 * 120.79893 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1196 4.0078 9 1 3.1476 -2.2864 3.6036 10 1 3.1474 -0.1859 4.8160 11 1 1.1680 -1.5867 4.8164 12 7 2.0184 -0.6905 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6487 -0.7286 -3.5878 16 1 3.6479 -1.1211 -3.3988 17 6 1.7042 -1.8821 -3.9315 18 6 2.7000 0.2400 -4.7412 19 7 1.5942 0.8368 -5.1412 20 6 1.5911 1.6908 -6.1457 21 6 2.7582 1.9932 -6.8219 22 6 3.9419 1.3867 -6.4318 23 6 3.9083 0.4975 -5.3656 24 9 5.0387 -0.1127 -4.9472 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.7082 1.1607 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 1.6675 -2.5826 -3.0972 31 1 2.0669 -2.3957 -4.8219 32 1 0.7050 -1.4896 -4.1206 33 1 0.6650 2.1593 -6.4445 34 1 2.7481 2.6940 -7.6435 35 1 4.8688 1.6043 -6.9416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330964584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:34 Heat of formation + Delta-G solvation = -77.581424 kcal Electronic energy + Delta-G solvation = -20018.333992 eV Core-core repulsion = 16736.691392 eV Total energy + Delta-G solvation = -3281.642600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.04623 -41.46435 -40.21884 -36.75125 -35.35587 -34.25090 -33.08151 -31.29566 -30.20181 -27.34496 -26.17713 -24.60586 -24.11621 -22.41702 -20.95821 -19.06136 -18.78856 -18.20223 -17.57340 -17.34478 -16.88527 -16.75428 -15.96882 -15.91558 -15.11511 -14.90102 -14.83213 -14.39098 -14.33172 -14.05564 -13.79529 -13.43213 -13.26507 -13.02435 -12.93443 -12.78489 -12.72830 -12.30145 -12.24810 -12.11122 -11.09668 -10.86876 -10.72012 -10.59214 -10.42022 -9.84878 -9.73984 -8.17636 -6.35446 -0.09861 0.16297 1.44623 1.45224 1.57833 1.82017 2.31774 2.49108 2.81603 2.97964 3.12692 3.20266 3.57265 3.76051 3.99868 4.00359 4.14350 4.21336 4.50977 4.66490 4.75004 4.80236 4.86062 4.92024 4.93595 5.02939 5.10020 5.22183 5.43034 5.61161 5.66126 5.68899 5.90908 6.09520 6.72665 6.93109 6.97680 7.32214 7.55992 8.89107 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.004530 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.601313 B = 6179.041309 C = 6432.165518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.272 3.728 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.703 5.703 13 C 0.510 3.490 14 O -0.588 6.588 15 C -0.063 4.063 16 H 0.124 0.876 17 C -0.125 4.125 18 C 0.104 3.896 19 N -0.468 5.468 20 C 0.078 3.922 21 C -0.132 4.132 22 C -0.107 4.107 23 C 0.032 3.968 24 F -0.134 7.134 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.008 0.992 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -3.730 -19.326 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.169 3.831 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.353 5.353 13 C 0.296 3.704 14 O -0.468 6.468 15 C -0.085 4.085 16 H 0.142 0.858 17 C -0.183 4.183 18 C -0.035 4.035 19 N -0.177 5.177 20 C -0.080 4.080 21 C -0.151 4.151 22 C -0.133 4.133 23 C 0.010 3.990 24 F -0.113 7.113 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.202 0.798 34 H 0.206 0.794 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.019 -3.001 -18.756 19.415 hybrid contribution 1.112 -0.216 0.847 1.414 sum 5.131 -3.218 -17.909 18.905 Atomic orbital electron populations 1.21866 0.98288 0.99445 0.99329 1.18326 0.91127 0.91726 0.81952 0.98825 1.21578 1.32529 1.13549 0.90717 0.90731 1.25832 0.94847 0.95577 1.02408 1.70071 1.37068 1.24053 1.24544 0.85259 0.78101 0.78505 0.78232 1.18236 1.21008 1.20342 1.46213 1.65418 1.14180 1.09455 1.20805 0.77602 0.86993 0.85027 1.90629 1.52359 1.18223 1.85600 1.20319 1.03586 0.95595 0.88956 0.85788 1.21661 0.98085 0.94986 1.03568 1.20780 0.88500 0.97596 0.96641 1.67424 1.29409 1.07916 1.12904 1.23436 1.00631 0.93597 0.90304 1.22520 0.91097 0.99921 1.01609 1.22034 1.02214 0.94345 0.94684 1.18761 0.82556 0.98683 0.98997 1.91479 1.48697 1.81522 1.89610 0.93958 0.91561 0.97260 0.92562 0.75993 0.89920 0.89471 0.92693 0.79815 0.79446 0.80335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 2 C 0.27 14.68 2.56 44.24 0.11 14.79 16 3 H -0.01 -0.39 7.58 -2.38 -0.02 -0.41 16 4 C -0.55 -29.52 8.73 25.60 0.22 -29.30 16 5 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 8 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.70 -30.69 4.96 -446.09 -2.21 -32.91 16 13 C 0.51 21.97 7.07 87.66 0.62 22.59 16 14 O -0.59 -30.95 15.19 -3.01 -0.05 -30.99 16 15 C -0.06 -1.99 2.95 -12.28 -0.04 -2.03 16 16 H 0.12 3.45 7.11 -2.39 -0.02 3.44 16 17 C -0.13 -3.18 8.99 71.98 0.65 -2.53 16 18 C 0.10 3.29 4.98 42.60 0.21 3.51 16 19 N -0.47 -15.15 9.28 -183.71 -1.71 -16.86 16 20 C 0.08 1.79 11.18 84.69 0.95 2.74 16 21 C -0.13 -2.17 10.11 22.35 0.23 -1.95 16 22 C -0.11 -2.02 10.16 22.51 0.23 -1.80 16 23 C 0.03 0.85 7.28 22.47 0.16 1.01 16 24 F -0.13 -3.60 16.20 44.97 0.73 -2.87 16 25 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.40 14.72 7.96 -92.71 -0.74 13.99 16 30 H 0.08 1.85 7.57 -2.39 -0.02 1.83 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.59 8.04 -2.38 -0.02 1.57 16 33 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -74.82 305.35 3.87 -70.96 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.37 Total: 19.67 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 4.46 Total: 1.98 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -3.68 Total: -103.32 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.73 Total: -2.87 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -74.82 3.87 -70.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330964584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.624 kcal (2) G-P(sol) polarization free energy of solvation -74.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds