Wall clock time and date at job start Mon Mar 30 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47322 * 2 1 4 4 C 1.50700 * 109.47211 * 240.00349 * 2 1 3 5 5 H 1.07994 * 120.00780 * 240.00156 * 4 2 1 6 6 C 1.37884 * 119.99895 * 59.99836 * 4 2 1 7 7 N 1.31515 * 120.00046 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47220 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46921 * 120.00036 * 8 6 4 11 11 H 1.48504 * 109.46966 * 239.99812 * 8 6 4 12 12 N 1.46496 * 109.47271 * 120.00585 * 2 1 3 13 13 C 1.34776 * 119.99846 * 274.99703 * 12 2 1 14 14 O 1.21282 * 119.99940 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00035 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.46665 * 60.00498 * 15 13 12 17 17 C 1.52997 * 109.47342 * 300.00333 * 15 13 12 18 18 C 1.50706 * 109.47294 * 180.02562 * 15 13 12 19 19 N 1.31865 * 119.63255 * 59.72706 * 18 15 13 20 20 C 1.31851 * 121.75179 * 179.75259 * 19 18 15 21 21 C 1.38234 * 120.81746 * 0.52743 * 20 19 18 22 22 C 1.38597 * 119.18981 * 359.74364 * 21 20 19 23 23 C 1.38415 * 119.63852 * 240.00682 * 18 15 13 24 24 F 1.35103 * 120.44632 * 359.97438 * 23 18 15 25 25 H 1.09000 * 109.47297 * 59.99475 * 1 2 3 26 26 H 1.09005 * 109.46706 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46994 * 299.99633 * 1 2 3 28 28 H 0.96995 * 120.00242 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00387 * 95.00249 * 12 2 1 30 30 H 1.09000 * 109.47140 * 179.97438 * 17 15 13 31 31 H 1.08992 * 109.47280 * 299.99565 * 17 15 13 32 32 H 1.09002 * 109.46777 * 60.00285 * 17 15 13 33 33 H 1.07997 * 119.58980 * 180.27060 * 20 19 18 34 34 H 1.07991 * 120.40716 * 179.72449 * 21 20 19 35 35 H 1.07992 * 120.80195 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 3.1454 -2.2874 -3.6040 10 1 1.1660 -1.5863 -4.8161 11 1 3.1465 -0.1870 -4.8166 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3570 14 8 1.8583 1.1582 2.4117 15 6 2.6490 -0.7290 3.5876 16 1 3.6481 -1.1215 3.3983 17 6 1.7045 -1.8826 3.9312 18 6 2.6993 0.2391 4.7414 19 7 1.5939 0.8391 5.1377 20 6 1.5891 1.6897 6.1452 21 6 2.7560 1.9934 6.8212 22 6 3.9401 1.3875 6.4317 23 6 3.9061 0.4931 5.3698 24 9 5.0361 -0.1210 4.9557 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7086 1.1615 -3.4843 29 1 2.2491 -1.6319 1.1524 30 1 2.0677 -2.3968 4.8210 31 1 0.7054 -1.4901 4.1204 32 1 1.6678 -2.5830 3.0968 33 1 0.6627 2.1580 6.4433 34 1 2.7451 2.6943 7.6427 35 1 4.8666 1.6054 6.9418 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330964585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:39 Heat of formation + Delta-G solvation = -54.963818 kcal Electronic energy + Delta-G solvation = -20017.209730 eV Core-core repulsion = 16736.547903 eV Total energy + Delta-G solvation = -3280.661827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.02225 -40.32649 -38.67577 -34.84204 -34.04398 -32.40851 -31.99531 -30.01289 -28.49748 -25.21484 -25.07023 -23.55012 -22.80054 -20.70768 -19.21420 -17.81333 -17.51874 -17.00681 -16.18886 -15.91525 -15.45829 -15.15311 -14.49109 -14.31901 -14.00936 -13.71083 -13.43720 -13.18009 -12.89392 -12.54944 -12.34761 -12.16174 -11.81609 -11.56848 -11.17688 -11.05640 -10.90881 -10.64666 -10.26212 -10.19901 -9.91682 -9.51916 -9.04604 -8.99277 -8.73622 -8.50912 -7.83788 -6.09064 -4.18120 0.87017 1.06433 3.25699 3.33299 3.36140 3.45817 3.55965 3.92082 4.17483 4.24720 4.40370 4.56771 4.63380 4.83619 5.17399 5.22844 5.30150 5.31235 5.48987 5.68221 5.72292 5.82489 5.86417 6.01137 6.27834 6.56973 6.88734 7.04169 7.21294 7.52432 7.61759 7.73838 7.91432 7.97034 8.19604 8.72289 8.82749 9.19586 9.49641 10.96953 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032956 B = 0.004530 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.421661 B = 6179.798669 C = 6433.707454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.514 3.486 14 O -0.541 6.541 15 C -0.072 4.072 16 H 0.108 0.892 17 C -0.133 4.133 18 C 0.138 3.862 19 N -0.427 5.427 20 C 0.094 3.906 21 C -0.153 4.153 22 C -0.111 4.111 23 C 0.048 3.952 24 F -0.130 7.130 25 H 0.089 0.911 26 H 0.026 0.974 27 H 0.015 0.985 28 H 0.263 0.737 29 H 0.388 0.612 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 -2.634 17.873 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.356 5.356 13 C 0.297 3.703 14 O -0.418 6.418 15 C -0.094 4.094 16 H 0.126 0.874 17 C -0.191 4.191 18 C -0.003 4.003 19 N -0.134 5.134 20 C -0.064 4.064 21 C -0.173 4.173 22 C -0.137 4.137 23 C 0.027 3.973 24 F -0.108 7.108 25 H 0.107 0.893 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.220 0.780 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.839 -1.854 17.274 17.604 hybrid contribution 1.491 -0.677 -0.502 1.713 sum 4.330 -2.531 16.772 17.506 Atomic orbital electron populations 1.22060 0.98429 0.99071 1.00878 1.18728 0.91063 0.93900 0.79931 0.93526 1.21270 1.32281 1.13165 0.90338 0.92023 1.24894 0.94839 0.94965 0.99052 1.69919 1.35965 1.22530 1.23709 0.86399 0.78586 0.79530 0.82610 1.19726 1.20893 1.20915 1.46457 1.65377 1.13481 1.10299 1.19888 0.78943 0.87403 0.84028 1.90669 1.50486 1.15904 1.84750 1.20367 1.02638 0.95060 0.91372 0.87386 1.21674 0.99644 0.95819 1.01918 1.20796 0.87492 0.96243 0.95723 1.67505 1.28559 1.06250 1.11067 1.22868 0.98436 0.94242 0.90864 1.22050 0.92643 1.00850 1.01742 1.21565 1.00352 0.95838 0.95994 1.18557 0.83306 0.97552 0.97926 1.91498 1.48757 1.81100 1.89492 0.89275 0.95507 0.96547 0.92676 0.77972 0.92155 0.90942 0.91122 0.82071 0.83985 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.27 6.93 2.56 -69.08 -0.18 6.75 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.71 -15.19 4.96 -54.93 -0.27 -15.46 16 13 C 0.51 10.79 7.07 -10.99 -0.08 10.71 16 14 O -0.54 -13.59 15.18 5.56 0.08 -13.51 16 15 C -0.07 -1.15 2.95 -92.92 -0.27 -1.42 16 16 H 0.11 1.54 7.12 -51.93 -0.37 1.17 16 17 C -0.13 -1.75 8.99 37.16 0.33 -1.41 16 18 C 0.14 2.20 4.98 -82.51 -0.41 1.79 16 19 N -0.43 -6.91 9.27 -9.42 -0.09 -7.00 16 20 C 0.09 1.15 11.18 -17.54 -0.20 0.95 16 21 C -0.15 -1.51 10.11 -39.45 -0.40 -1.91 16 22 C -0.11 -1.22 10.17 -39.21 -0.40 -1.61 16 23 C 0.05 0.67 7.28 -39.28 -0.29 0.39 16 24 F -0.13 -1.81 16.21 2.25 0.04 -1.77 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.39 7.14 7.96 -40.82 -0.32 6.82 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 32 H 0.07 0.84 7.56 -51.93 -0.39 0.45 16 33 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -32.93 305.34 -6.26 -39.18 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.29 Total: 4.85 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.94 Total: -2.08 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.27 Total: -47.11 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.93 -6.26 -39.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330964585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.780 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds