Wall clock time and date at job start Mon Mar 30 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47126 * 2 1 4 4 C 1.50699 * 109.47030 * 120.00417 * 2 1 3 5 5 O 1.21279 * 120.00406 * 119.99668 * 4 2 1 6 6 N 1.34780 * 119.99563 * 299.99249 * 4 2 1 7 7 C 1.46499 * 120.00229 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99546 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.47349 * 270.00192 * 8 6 4 10 10 H 1.08007 * 119.99972 * 0.02562 * 9 8 6 11 11 C 1.37872 * 120.00296 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00006 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00210 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47150 * 89.99935 * 13 11 9 15 15 H 1.48496 * 109.47684 * 210.00480 * 13 11 9 16 16 H 1.48503 * 109.46795 * 330.00297 * 13 11 9 17 17 C 1.50701 * 109.46746 * 240.00180 * 2 1 3 18 18 N 1.31865 * 119.63603 * 299.72333 * 17 2 1 19 19 C 1.31855 * 121.75349 * 179.75649 * 18 17 2 20 20 C 1.38237 * 120.81398 * 0.52556 * 19 18 17 21 21 C 1.38586 * 119.19228 * 359.74558 * 20 19 18 22 22 C 1.38428 * 119.63819 * 120.00642 * 17 2 1 23 23 F 1.35102 * 120.44010 * 359.95005 * 22 17 2 24 24 H 1.09000 * 109.46709 * 59.99685 * 1 2 3 25 25 H 1.08990 * 109.47561 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46647 * 300.00171 * 1 2 3 27 27 H 1.09002 * 109.47391 * 89.99442 * 7 6 4 28 28 H 1.09001 * 109.46813 * 329.99499 * 7 6 4 29 29 H 1.09004 * 109.47041 * 209.99626 * 7 6 4 30 30 H 1.08993 * 109.47560 * 30.00104 * 8 6 4 31 31 H 1.09000 * 109.47209 * 150.00790 * 8 6 4 32 32 H 0.97003 * 119.99913 * 179.97438 * 12 11 9 33 33 H 1.07989 * 119.59278 * 180.29070 * 19 18 17 34 34 H 1.08000 * 120.40188 * 179.72141 * 20 19 18 35 35 H 1.08000 * 120.80181 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 0.8642 0.9409 2.5890 8 6 2.1955 -0.9403 3.6506 9 6 1.2033 -1.9977 4.0611 10 1 0.2992 -2.1415 3.4880 11 6 1.4496 -2.7817 5.1682 12 7 0.5840 -3.7048 5.5260 13 14 3.0136 -2.5337 6.1590 14 1 2.7681 -1.5343 7.2296 15 1 3.4222 -3.8238 6.7704 16 1 4.0940 -2.0457 5.2647 17 6 2.0323 -0.7104 -1.2305 18 7 1.7138 -1.9745 -1.4293 19 6 2.1262 -2.6349 -2.4934 20 6 2.9237 -2.0223 -3.4419 21 6 3.2849 -0.6959 -3.2668 22 6 2.8277 -0.0305 -2.1367 23 9 3.1544 1.2632 -1.9249 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.1837 0.6428 2.6224 28 1 1.0275 1.5996 1.7360 29 1 1.1220 1.4665 3.5085 30 1 3.1558 -1.4080 3.4334 31 1 2.3165 -0.2215 4.4611 32 1 0.7575 -4.2566 6.3047 33 1 1.8406 -3.6682 -2.6236 34 1 3.2615 -2.5709 -4.3088 35 1 3.9066 -0.1916 -3.9917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330979137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:54 Heat of formation + Delta-G solvation = -33.272532 kcal Electronic energy + Delta-G solvation = -20306.076172 eV Core-core repulsion = 17026.354950 eV Total energy + Delta-G solvation = -3279.721222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.04413 -40.36743 -38.89754 -34.92633 -34.20916 -32.48271 -32.02172 -29.99961 -28.16735 -26.23421 -24.80844 -23.52943 -23.10277 -21.37940 -18.56956 -17.84842 -17.31424 -16.89000 -16.42251 -16.13989 -15.70162 -15.22308 -14.65923 -14.12040 -14.01583 -13.87181 -13.51894 -13.21983 -12.92097 -12.87879 -12.41416 -12.23584 -12.04342 -11.90101 -11.59317 -11.29513 -11.19061 -10.76311 -10.44112 -10.07125 -9.90228 -9.49641 -9.46063 -9.03628 -8.74034 -8.54551 -7.64898 -6.03815 -4.01796 0.88201 1.08302 3.29614 3.37018 3.38295 3.42729 3.55193 3.89142 4.01769 4.25675 4.43827 4.51533 4.65431 4.84978 5.04765 5.19069 5.28763 5.31282 5.40649 5.53635 5.68987 5.72372 5.84338 5.87702 5.90486 5.96083 6.18747 6.40869 6.57930 6.70139 7.01305 7.38117 7.65978 7.95500 8.27437 8.52325 8.98517 9.04221 9.56637 11.09748 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026414 B = 0.005407 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.771289 B = 5176.885711 C = 5482.772233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 H 0.106 0.894 4 C 0.521 3.479 5 O -0.525 6.525 6 N -0.598 5.598 7 C 0.082 3.918 8 C 0.217 3.783 9 C -0.525 4.525 10 H 0.075 0.925 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.874 3.126 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.265 1.265 17 C 0.136 3.864 18 N -0.423 5.423 19 C 0.096 3.904 20 C -0.153 4.153 21 C -0.111 4.111 22 C 0.046 3.954 23 F -0.131 7.131 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.025 0.975 32 H 0.264 0.736 33 H 0.163 0.837 34 H 0.143 0.857 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 9.998 -16.892 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 H 0.124 0.876 4 C 0.306 3.694 5 O -0.401 6.401 6 N -0.330 5.330 7 C -0.062 4.062 8 C 0.096 3.904 9 C -0.563 4.563 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.189 1.189 17 C -0.004 4.004 18 N -0.130 5.130 19 C -0.062 4.062 20 C -0.173 4.173 21 C -0.138 4.138 22 C 0.024 3.976 23 F -0.110 7.110 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.180 0.820 34 H 0.160 0.840 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.234 8.938 -16.159 18.600 hybrid contribution 1.343 0.650 0.024 1.492 sum 3.577 9.588 -16.135 19.106 Atomic orbital electron populations 1.21953 0.91155 1.04357 1.02914 1.20288 0.98901 0.99322 0.90379 0.87564 1.19813 0.81212 0.84702 0.83697 1.90681 1.38052 1.25359 1.85971 1.47739 1.50388 1.28319 1.06539 1.21830 0.95440 0.87331 1.01582 1.19678 0.96527 0.92588 0.81591 1.21336 1.06594 1.16612 1.11803 0.90669 1.24850 0.96374 0.94716 0.97103 1.69900 1.35723 1.21544 1.26526 0.86877 0.84505 0.77961 0.80582 1.20121 1.20969 1.18918 1.20806 0.94312 0.90620 0.94630 1.67550 1.20491 1.06030 1.18970 1.22909 0.94044 1.00433 0.88797 1.22064 0.99371 0.94488 1.01352 1.21546 1.00112 0.95485 0.96626 1.18546 1.01082 0.80262 0.97660 1.91483 1.91029 1.33713 1.94792 0.92260 0.90727 0.90056 0.92360 0.92211 0.91425 0.94224 0.95662 0.92640 0.81975 0.83954 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.73 37.16 0.32 -1.76 16 2 C -0.07 -1.09 2.15 -92.92 -0.20 -1.29 16 3 H 0.11 1.48 6.38 -51.93 -0.33 1.14 16 4 C 0.52 11.22 7.02 -10.98 -0.08 11.14 16 5 O -0.52 -13.64 15.09 5.56 0.08 -13.56 16 6 N -0.60 -12.70 2.86 -182.95 -0.52 -13.23 16 7 C 0.08 1.27 8.85 59.85 0.53 1.80 16 8 C 0.22 5.45 4.27 -5.19 -0.02 5.43 16 9 C -0.52 -15.43 9.94 -34.44 -0.34 -15.77 16 10 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 11 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 13 Si 0.87 21.95 27.47 -169.99 -4.67 17.28 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 17 C 0.14 2.24 4.98 -82.51 -0.41 1.83 16 18 N -0.42 -7.28 9.28 -9.42 -0.09 -7.37 16 19 C 0.10 1.25 11.18 -17.54 -0.20 1.06 16 20 C -0.15 -1.57 10.11 -39.45 -0.40 -1.97 16 21 C -0.11 -1.22 10.16 -39.22 -0.40 -1.62 16 22 C 0.05 0.64 7.28 -39.27 -0.29 0.36 16 23 F -0.13 -1.77 16.21 2.25 0.04 -1.73 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 26 H 0.08 1.06 4.53 -51.93 -0.24 0.83 16 27 H 0.06 0.89 6.95 -51.93 -0.36 0.53 16 28 H 0.06 0.72 6.01 -51.93 -0.31 0.41 16 29 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 30 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 31 H 0.03 0.59 7.32 -51.93 -0.38 0.21 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -36.46 298.03 -5.53 -41.99 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.06 Total: -1.70 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.58 Total: 1.23 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.16 Total: -48.01 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.46 -5.53 -41.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330979137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.719 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds