Wall clock time and date at job start Mon Mar 30 2020 05:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47126 * 2 1 4 4 C 1.50699 * 109.47030 * 120.00417 * 2 1 3 5 5 O 1.21279 * 120.00406 * 119.99668 * 4 2 1 6 6 N 1.34780 * 119.99563 * 299.99249 * 4 2 1 7 7 C 1.46499 * 120.00229 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99546 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.47349 * 270.00192 * 8 6 4 10 10 H 1.08007 * 119.99972 * 0.02562 * 9 8 6 11 11 C 1.37872 * 120.00296 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00006 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00210 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47150 * 89.99935 * 13 11 9 15 15 H 1.48496 * 109.47684 * 210.00480 * 13 11 9 16 16 H 1.48503 * 109.46795 * 330.00297 * 13 11 9 17 17 C 1.50701 * 109.46746 * 240.00180 * 2 1 3 18 18 N 1.31865 * 119.63603 * 299.72333 * 17 2 1 19 19 C 1.31855 * 121.75349 * 179.75649 * 18 17 2 20 20 C 1.38237 * 120.81398 * 0.52556 * 19 18 17 21 21 C 1.38586 * 119.19228 * 359.74558 * 20 19 18 22 22 C 1.38428 * 119.63819 * 120.00642 * 17 2 1 23 23 F 1.35102 * 120.44010 * 359.95005 * 22 17 2 24 24 H 1.09000 * 109.46709 * 59.99685 * 1 2 3 25 25 H 1.08990 * 109.47561 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46647 * 300.00171 * 1 2 3 27 27 H 1.09002 * 109.47391 * 89.99442 * 7 6 4 28 28 H 1.09001 * 109.46813 * 329.99499 * 7 6 4 29 29 H 1.09004 * 109.47041 * 209.99626 * 7 6 4 30 30 H 1.08993 * 109.47560 * 30.00104 * 8 6 4 31 31 H 1.09000 * 109.47209 * 150.00790 * 8 6 4 32 32 H 0.97003 * 119.99913 * 179.97438 * 12 11 9 33 33 H 1.07989 * 119.59278 * 180.29070 * 19 18 17 34 34 H 1.08000 * 120.40188 * 179.72141 * 20 19 18 35 35 H 1.08000 * 120.80181 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 0.8642 0.9409 2.5890 8 6 2.1955 -0.9403 3.6506 9 6 1.2033 -1.9977 4.0611 10 1 0.2992 -2.1415 3.4880 11 6 1.4496 -2.7817 5.1682 12 7 0.5840 -3.7048 5.5260 13 14 3.0136 -2.5337 6.1590 14 1 2.7681 -1.5343 7.2296 15 1 3.4222 -3.8238 6.7704 16 1 4.0940 -2.0457 5.2647 17 6 2.0323 -0.7104 -1.2305 18 7 1.7138 -1.9745 -1.4293 19 6 2.1262 -2.6349 -2.4934 20 6 2.9237 -2.0223 -3.4419 21 6 3.2849 -0.6959 -3.2668 22 6 2.8277 -0.0305 -2.1367 23 9 3.1544 1.2632 -1.9249 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.1837 0.6428 2.6224 28 1 1.0275 1.5996 1.7360 29 1 1.1220 1.4665 3.5085 30 1 3.1558 -1.4080 3.4334 31 1 2.3165 -0.2215 4.4611 32 1 0.7575 -4.2566 6.3047 33 1 1.8406 -3.6682 -2.6236 34 1 3.2615 -2.5709 -4.3088 35 1 3.9066 -0.1916 -3.9917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330979137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:53 Heat of formation + Delta-G solvation = -59.524195 kcal Electronic energy + Delta-G solvation = -20307.214530 eV Core-core repulsion = 17026.354950 eV Total energy + Delta-G solvation = -3280.859580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.04633 -41.55783 -40.33618 -36.68142 -35.55025 -34.53102 -33.09790 -31.24347 -29.95888 -27.68727 -26.01319 -24.97482 -24.38866 -22.84968 -20.12162 -19.16460 -18.87623 -18.35685 -17.65924 -17.51496 -16.82811 -16.76915 -16.23087 -15.86095 -15.30125 -14.90955 -14.78282 -14.62048 -14.30999 -14.12206 -13.94224 -13.65520 -13.47835 -13.32573 -13.11016 -12.95899 -12.63115 -12.41195 -12.11741 -11.99416 -11.75816 -10.86917 -10.81928 -10.67196 -10.41023 -9.86069 -9.40846 -8.33932 -6.38742 -0.11018 0.16490 1.30414 1.35405 1.46251 1.75595 2.25214 2.31021 2.70913 2.95724 2.99818 3.17984 3.53365 3.70642 3.79674 3.99033 4.11107 4.16197 4.35289 4.51337 4.62806 4.68177 4.70774 4.76432 4.78262 4.89956 4.95290 4.97292 5.03638 5.24987 5.45504 5.61211 5.65773 6.24185 6.61926 6.65587 6.96557 7.21029 7.39977 8.83426 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026414 B = 0.005407 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.771289 B = 5176.885711 C = 5482.772233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 H 0.134 0.866 4 C 0.509 3.491 5 O -0.581 6.581 6 N -0.606 5.606 7 C 0.073 3.927 8 C 0.224 3.776 9 C -0.534 4.534 10 H 0.026 0.974 11 C 0.010 3.990 12 N -0.946 5.946 13 Si 0.950 3.050 14 H -0.248 1.248 15 H -0.282 1.282 16 H -0.259 1.259 17 C 0.102 3.898 18 N -0.475 5.475 19 C 0.075 3.925 20 C -0.131 4.131 21 C -0.105 4.105 22 C 0.038 3.962 23 F -0.130 7.130 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.016 0.984 31 H 0.053 0.947 32 H 0.268 0.732 33 H 0.179 0.821 34 H 0.189 0.811 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 12.115 -18.315 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 H 0.152 0.848 4 C 0.297 3.703 5 O -0.461 6.461 6 N -0.337 5.337 7 C -0.069 4.069 8 C 0.102 3.898 9 C -0.573 4.573 10 H 0.044 0.956 11 C -0.188 4.188 12 N -0.586 5.586 13 Si 0.772 3.228 14 H -0.172 1.172 15 H -0.207 1.207 16 H -0.183 1.183 17 C -0.037 4.037 18 N -0.183 5.183 19 C -0.082 4.082 20 C -0.150 4.150 21 C -0.131 4.131 22 C 0.016 3.984 23 F -0.109 7.109 24 H 0.109 0.891 25 H 0.059 0.941 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.196 0.804 34 H 0.206 0.794 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.736 11.116 -17.590 21.141 hybrid contribution 0.797 -0.083 0.344 0.872 sum 4.533 11.033 -17.246 20.969 Atomic orbital electron populations 1.21921 0.89960 1.02789 1.04953 1.20275 0.99762 0.99862 0.87966 0.84808 1.20836 0.80119 0.84246 0.85106 1.90628 1.40560 1.27960 1.86951 1.47871 1.50848 1.29485 1.05512 1.22177 0.94423 0.85850 1.04402 1.19360 0.94168 0.92328 0.83956 1.21543 1.05932 1.18356 1.11443 0.95553 1.25867 1.00346 0.94114 0.98451 1.70061 1.38217 1.22840 1.27523 0.85689 0.79320 0.78626 0.79173 1.17159 1.20712 1.18286 1.20809 0.96443 0.91014 0.95479 1.67442 1.22524 1.07069 1.21245 1.23385 0.94765 1.01323 0.88738 1.22509 0.96852 0.94269 1.01376 1.22036 0.99390 0.95652 0.95995 1.18663 1.00990 0.80417 0.98327 1.91478 1.90981 1.33560 1.94899 0.89133 0.94079 0.88962 0.92429 0.88096 0.89762 0.96581 0.92926 0.92282 0.80422 0.79425 0.79978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 8.73 71.98 0.63 -3.28 16 2 C -0.06 -1.84 2.15 -12.29 -0.03 -1.87 16 3 H 0.13 3.45 6.38 -2.39 -0.02 3.43 16 4 C 0.51 22.47 7.02 87.66 0.62 23.09 16 5 O -0.58 -31.65 15.09 -3.02 -0.05 -31.70 16 6 N -0.61 -25.94 2.86 -851.13 -2.43 -28.37 16 7 C 0.07 2.15 8.85 127.77 1.13 3.28 16 8 C 0.22 11.40 4.27 85.63 0.37 11.77 16 9 C -0.53 -32.64 9.94 25.60 0.25 -32.38 16 10 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 11 C 0.01 0.60 5.47 84.65 0.46 1.07 16 12 N -0.95 -61.34 13.96 21.45 0.30 -61.04 16 13 Si 0.95 45.62 27.47 68.60 1.88 47.51 16 14 H -0.25 -10.76 7.11 99.48 0.71 -10.06 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 17 C 0.10 3.32 4.98 42.60 0.21 3.53 16 18 N -0.47 -16.73 9.28 -183.71 -1.70 -18.43 16 19 C 0.08 1.92 11.18 84.69 0.95 2.87 16 20 C -0.13 -2.27 10.11 22.35 0.23 -2.05 16 21 C -0.10 -1.96 10.16 22.51 0.23 -1.73 16 22 C 0.04 0.98 7.28 22.47 0.16 1.15 16 23 F -0.13 -3.21 16.21 44.97 0.73 -2.49 16 24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.42 8.04 -2.39 -0.02 1.40 16 26 H 0.09 2.32 4.53 -2.39 -0.01 2.31 16 27 H 0.06 1.71 6.95 -2.39 -0.02 1.70 16 28 H 0.10 2.13 6.01 -2.39 -0.01 2.12 16 29 H 0.08 2.21 7.89 -2.38 -0.02 2.19 16 30 H 0.02 0.89 6.48 -2.39 -0.02 0.88 16 31 H 0.05 2.38 7.32 -2.39 -0.02 2.36 16 32 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 33 H 0.18 3.61 8.06 -2.92 -0.02 3.59 16 34 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -85.75 298.03 4.99 -80.76 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.05 Total: 8.31 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.21 Total: 5.44 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -3.84 Total: -107.84 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.05 Total: -31.70 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.73 Total: -2.49 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.51 kcal Total: -85.75 4.99 -80.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330979137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.234 kcal (2) G-P(sol) polarization free energy of solvation -85.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds