Wall clock time and date at job start Mon Mar 30 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47263 * 2 1 4 4 C 1.50700 * 109.46938 * 239.99793 * 2 1 3 5 5 O 1.21281 * 120.00383 * 253.95193 * 4 2 1 6 6 N 1.34780 * 119.99762 * 73.95022 * 4 2 1 7 7 C 1.46499 * 120.00234 * 3.68517 * 6 4 2 8 8 C 1.46501 * 119.99754 * 183.69073 * 6 4 2 9 9 C 1.50697 * 109.47554 * 89.99885 * 8 6 4 10 10 H 1.07994 * 119.99917 * 359.97438 * 9 8 6 11 11 C 1.37876 * 120.00283 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99859 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47069 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46617 * 120.00219 * 13 11 9 16 16 H 1.48502 * 109.47216 * 240.00086 * 13 11 9 17 17 C 1.50702 * 109.46942 * 119.99924 * 2 1 3 18 18 N 1.31871 * 119.63538 * 60.00186 * 17 2 1 19 19 C 1.31846 * 121.74996 * 179.97438 * 18 17 2 20 20 C 1.38234 * 120.81925 * 359.97438 * 19 18 17 21 21 C 1.38587 * 119.18867 * 0.02562 * 20 19 18 22 22 C 1.38420 * 119.63660 * 239.72287 * 17 2 1 23 23 F 1.35099 * 120.44151 * 359.97438 * 22 17 2 24 24 H 1.08998 * 109.46928 * 296.14198 * 1 2 3 25 25 H 1.09000 * 109.47313 * 56.13498 * 1 2 3 26 26 H 1.09000 * 109.47724 * 176.13754 * 1 2 3 27 27 H 1.09007 * 109.46707 * 84.66213 * 7 6 4 28 28 H 1.09000 * 109.46912 * 204.65978 * 7 6 4 29 29 H 1.09005 * 109.47111 * 324.66516 * 7 6 4 30 30 H 1.09003 * 109.47181 * 209.99686 * 8 6 4 31 31 H 1.09000 * 109.47175 * 329.99539 * 8 6 4 32 32 H 0.96999 * 120.00141 * 180.02562 * 12 11 9 33 33 H 1.08002 * 119.58714 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.40074 * 180.02562 * 20 19 18 35 35 H 1.08008 * 120.79939 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5082 -1.8221 -1.1371 6 7 1.9526 -0.1105 -2.4347 7 6 1.4527 1.2628 -2.5373 8 6 2.3658 -0.8317 -3.6411 9 6 1.1846 -1.5723 -4.2131 10 1 0.2224 -1.5122 -3.7264 11 6 1.3322 -2.3266 -5.3577 12 7 2.5041 -2.4002 -5.9501 13 14 -0.1319 -3.2452 -6.0662 14 1 -1.3267 -3.0012 -5.2188 15 1 -0.3974 -2.7642 -7.4459 16 1 0.1644 -4.7000 -6.0976 17 6 2.0323 -0.7104 1.2305 18 7 1.7093 -1.9730 1.4320 19 6 2.1259 -2.6348 2.4935 20 6 2.9242 -2.0225 3.4416 21 6 3.2857 -0.6962 3.2661 22 6 2.8323 -0.0322 2.1338 23 9 3.1647 1.2595 1.9185 24 1 -0.3633 0.4528 0.9225 25 1 -0.3634 0.5726 -0.8533 26 1 -0.3634 -1.0253 -0.0692 27 1 2.2693 1.9613 -2.3540 28 1 1.0498 1.4290 -3.5364 29 1 0.6674 1.4198 -1.7979 30 1 2.7410 -0.1217 -4.3782 31 1 3.1524 -1.5425 -3.3880 32 1 2.6079 -2.9306 -6.7556 33 1 1.8399 -3.6680 2.6239 34 1 3.2620 -2.5712 4.3084 35 1 3.9088 -0.1923 3.9903 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330979138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:59 Heat of formation + Delta-G solvation = -64.110660 kcal Electronic energy + Delta-G solvation = -20254.578030 eV Core-core repulsion = 16973.519566 eV Total energy + Delta-G solvation = -3281.058464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.04076 -41.51167 -40.27204 -36.59519 -35.48984 -34.54217 -33.07214 -31.03260 -29.60348 -27.49859 -26.15997 -25.19960 -24.40401 -22.92282 -20.06995 -18.87744 -18.67597 -18.34444 -17.61549 -17.49102 -16.83952 -16.74370 -16.15481 -16.04880 -15.17889 -14.89178 -14.66746 -14.62095 -14.17065 -14.01582 -13.89670 -13.56718 -13.35778 -13.24398 -13.05626 -12.88184 -12.71042 -12.48849 -12.28120 -12.12973 -11.66745 -10.85488 -10.65917 -10.63282 -10.35683 -9.84298 -9.41001 -8.22774 -6.37737 -0.10530 0.17613 1.35755 1.38469 1.50587 1.80704 2.26620 2.41172 2.73585 2.97233 3.06611 3.21431 3.53683 3.73245 3.82523 4.00217 4.11955 4.17939 4.34017 4.49878 4.64251 4.69568 4.75242 4.79562 4.90924 4.94206 4.99620 5.06166 5.21789 5.26196 5.56101 5.66490 5.84266 6.05754 6.69072 6.76419 6.98414 7.27702 7.47579 8.84709 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.005221 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.967161 B = 5361.797560 C = 5745.342397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.057 4.057 3 H 0.127 0.873 4 C 0.506 3.494 5 O -0.579 6.579 6 N -0.610 5.610 7 C 0.069 3.931 8 C 0.260 3.740 9 C -0.540 4.540 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.970 3.030 14 H -0.266 1.266 15 H -0.267 1.267 16 H -0.282 1.282 17 C 0.098 3.902 18 N -0.467 5.467 19 C 0.075 3.925 20 C -0.131 4.131 21 C -0.106 4.106 22 C 0.036 3.964 23 F -0.131 7.131 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.024 0.976 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.181 0.819 34 H 0.189 0.811 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 7.795 19.879 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.079 4.079 3 H 0.145 0.855 4 C 0.294 3.706 5 O -0.459 6.459 6 N -0.342 5.342 7 C -0.073 4.073 8 C 0.139 3.861 9 C -0.578 4.578 10 H 0.072 0.928 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.794 3.206 14 H -0.190 1.190 15 H -0.192 1.192 16 H -0.208 1.208 17 C -0.041 4.041 18 N -0.175 5.175 19 C -0.083 4.083 20 C -0.150 4.150 21 C -0.132 4.132 22 C 0.014 3.986 23 F -0.110 7.110 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.042 0.958 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.198 0.802 34 H 0.206 0.794 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.407 6.795 19.124 20.438 hybrid contribution 0.309 -0.112 -0.446 0.554 sum -2.098 6.683 18.678 19.948 Atomic orbital electron populations 1.21707 0.89698 1.02841 1.04219 1.20282 0.99874 0.99702 0.88083 0.85531 1.20821 0.78728 0.86042 0.85039 1.90639 1.46907 1.21783 1.86570 1.48121 1.63448 1.15920 1.06685 1.22127 1.00158 0.80728 1.04247 1.18763 0.94684 0.91194 0.81492 1.21720 0.96252 1.30065 1.09783 0.92791 1.25885 0.99127 0.97119 0.97100 1.70067 1.24867 1.41668 1.20420 0.85338 0.78899 0.77962 0.78431 1.19043 1.19231 1.20804 1.20827 0.96616 0.91171 0.95497 1.67475 1.22456 1.06767 1.20778 1.23426 0.94726 1.01389 0.88716 1.22525 0.96846 0.94180 1.01437 1.22033 0.99493 0.95740 0.95950 1.18706 1.01024 0.80505 0.98350 1.91478 1.90849 1.33843 1.94849 0.89062 0.89753 0.93514 0.91153 0.90876 0.88771 0.95766 0.98753 0.92407 0.80193 0.79417 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.80 71.98 0.63 -2.94 16 2 C -0.06 -1.90 2.12 -12.29 -0.03 -1.93 16 3 H 0.13 3.47 6.45 -2.39 -0.02 3.45 16 4 C 0.51 23.05 6.87 87.66 0.60 23.66 16 5 O -0.58 -32.46 14.94 -3.03 -0.05 -32.50 16 6 N -0.61 -27.64 2.86 -851.11 -2.43 -30.07 16 7 C 0.07 2.20 9.85 127.77 1.26 3.45 16 8 C 0.26 14.72 5.16 85.63 0.44 15.16 16 9 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 10 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 11 C 0.01 0.38 5.46 84.65 0.46 0.84 16 12 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 13 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 17 C 0.10 3.20 5.13 42.60 0.22 3.42 16 18 N -0.47 -16.12 9.09 -183.71 -1.67 -17.79 16 19 C 0.08 1.85 11.18 84.69 0.95 2.80 16 20 C -0.13 -2.22 10.11 22.35 0.23 -2.00 16 21 C -0.11 -1.99 10.16 22.51 0.23 -1.76 16 22 C 0.04 0.95 7.28 22.47 0.16 1.11 16 23 F -0.13 -3.34 16.21 44.97 0.73 -2.62 16 24 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.08 2.12 5.81 -2.39 -0.01 2.11 16 26 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 27 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 29 H 0.09 2.36 4.56 -2.38 -0.01 2.35 16 30 H 0.02 1.38 8.07 -2.39 -0.02 1.36 16 31 H -0.01 -0.37 7.37 -2.39 -0.02 -0.39 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16 34 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -81.99 303.76 5.39 -76.59 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.10 Total: 5.91 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.40 Total: 9.90 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -3.82 Total: -105.34 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.05 Total: -32.50 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.73 Total: -2.62 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.99 5.39 -76.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330979138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.482 kcal (2) G-P(sol) polarization free energy of solvation -81.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds