Wall clock time and date at job start Mon Mar 30 2020 04:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99840 * 2 1 4 4 H 1.48502 * 109.47040 * 274.65992 * 3 2 1 5 5 H 1.48495 * 109.47238 * 34.65921 * 3 2 1 6 6 H 1.48498 * 109.46960 * 154.65953 * 3 2 1 7 7 C 1.37873 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99824 * 354.82705 * 7 2 1 9 9 C 1.50703 * 120.00067 * 174.83231 * 7 2 1 10 10 C 1.53046 * 109.45946 * 215.31560 * 9 7 2 11 11 C 1.53192 * 109.31164 * 178.61375 * 10 9 7 12 12 N 1.46921 * 108.77312 * 54.63416 * 11 10 9 13 13 C 1.34778 * 120.63114 * 126.37213 * 12 11 10 14 14 O 1.21705 * 119.99709 * 359.87225 * 13 12 11 15 15 C 1.46660 * 120.00316 * 179.87613 * 13 12 11 16 16 C 1.37931 * 126.21504 * 154.98735 * 15 13 12 17 17 C 1.39924 * 107.10582 * 180.25280 * 16 15 13 18 18 F 1.35096 * 126.07502 * 179.77166 * 17 16 15 19 19 C 1.35569 * 107.84500 * 359.77047 * 17 16 15 20 20 N 1.35744 * 108.83068 * 0.02562 * 19 17 16 21 21 H 0.97003 * 125.67852 * 179.97438 * 20 19 17 22 22 C 1.46929 * 118.74187 * 306.63948 * 12 11 10 23 23 C 1.52764 * 109.00518 * 53.31345 * 22 12 11 24 24 H 0.96995 * 120.00288 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.44597 * 335.27686 * 9 7 2 26 26 H 1.09003 * 109.49390 * 58.65829 * 10 9 7 27 27 H 1.09003 * 109.49811 * 298.56588 * 10 9 7 28 28 H 1.08994 * 109.58480 * 294.84864 * 11 10 9 29 29 H 1.08997 * 109.70045 * 174.48896 * 11 10 9 30 30 H 1.08002 * 126.44436 * 0.02562 * 16 15 13 31 31 H 1.08002 * 125.58040 * 180.02562 * 19 17 16 32 32 H 1.09001 * 109.58604 * 173.14693 * 22 12 11 33 33 H 1.08994 * 109.58475 * 293.57575 * 22 12 11 34 34 H 1.08993 * 109.56452 * 185.54959 * 23 22 12 35 35 H 1.09000 * 109.36194 * 65.49833 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3981 2.1033 -1.3955 5 1 1.4993 2.6222 0.7962 6 1 3.5924 1.4138 0.5992 7 6 2.0046 -1.1940 -0.0005 8 1 1.4678 -2.1274 0.0834 9 6 3.5070 -1.1966 -0.1181 10 6 3.9523 -2.4110 -0.9362 11 6 5.4771 -2.3915 -1.0829 12 7 6.0798 -2.3109 0.2546 13 6 7.0052 -3.2092 0.6460 14 8 7.3473 -4.0993 -0.1103 15 6 7.5999 -3.1142 1.9832 16 6 8.1534 -4.1515 2.7045 17 6 8.5924 -3.6183 3.9214 18 9 9.1911 -4.3032 4.9202 19 6 8.3102 -2.2923 3.9199 20 7 7.7089 -1.9736 2.7454 21 1 7.4036 -1.0897 2.4876 22 6 5.6503 -1.2361 1.1595 23 6 4.1276 -1.2652 1.2791 24 1 -0.4850 0.8400 0.0004 25 1 3.8336 -0.2837 -0.6162 26 1 3.4912 -2.3736 -1.9232 27 1 3.6475 -3.3249 -0.4261 28 1 5.7764 -1.5243 -1.6714 29 1 5.8101 -3.3028 -1.5795 30 1 8.2298 -5.1821 2.3907 31 1 8.5281 -1.6026 4.7219 32 1 6.0956 -1.3866 2.1429 33 1 5.9640 -0.2728 0.7575 34 1 3.7914 -0.4125 1.8688 35 1 3.8212 -2.1898 1.7683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334407998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:45 Heat of formation + Delta-G solvation = -21.014229 kcal Electronic energy + Delta-G solvation = -20217.112543 eV Core-core repulsion = 16937.922880 eV Total energy + Delta-G solvation = -3279.189663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.62029 -41.66394 -39.36299 -37.17678 -33.70976 -31.88212 -31.28263 -30.64288 -29.18314 -26.71094 -23.80880 -22.96311 -21.85804 -21.05006 -20.44304 -19.35218 -17.76947 -17.08611 -16.60352 -15.90613 -15.83424 -15.34558 -15.05054 -14.66644 -14.46734 -13.84953 -13.71868 -13.52916 -13.39953 -13.00366 -12.93882 -12.56018 -12.11672 -11.85920 -11.81314 -11.12822 -10.87549 -10.64756 -10.20735 -9.92981 -9.82781 -9.50452 -9.28814 -9.05205 -8.65299 -8.55446 -8.28394 -6.18830 -4.18629 1.27389 2.27886 2.71515 2.94507 3.15707 3.22604 3.26434 3.33466 4.22360 4.29144 4.70133 4.71895 4.88251 5.10165 5.13033 5.35614 5.36352 5.51585 5.66491 5.70673 5.79550 5.91062 6.08966 6.14923 6.30392 6.51868 6.54600 6.65909 6.68345 6.76757 6.99599 7.15590 7.28214 7.47101 7.63480 8.15270 8.41085 8.87318 9.43506 10.94650 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.005088 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.998641 B = 5501.286107 C = 5997.898615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.017 3.983 10 C -0.118 4.118 11 C 0.109 3.891 12 N -0.597 5.597 13 C 0.585 3.415 14 O -0.534 6.534 15 C -0.012 4.012 16 C -0.139 4.139 17 C 0.003 3.997 18 F -0.129 7.129 19 C -0.010 4.010 20 N -0.529 5.529 21 H 0.432 0.568 22 C 0.079 3.921 23 C -0.126 4.126 24 H 0.264 0.736 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.158 0.842 31 H 0.182 0.818 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.683 -0.563 5.665 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.002 4.002 10 C -0.156 4.156 11 C -0.013 4.013 12 N -0.329 5.329 13 C 0.372 3.628 14 O -0.411 6.411 15 C -0.126 4.126 16 C -0.165 4.165 17 C -0.022 4.022 18 F -0.108 7.108 19 C -0.146 4.146 20 N -0.133 5.133 21 H 0.278 0.722 22 C -0.045 4.045 23 C -0.165 4.165 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.176 0.824 31 H 0.199 0.801 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.627 -0.760 5.186 16.483 hybrid contribution 0.214 1.348 0.323 1.402 sum 15.842 0.588 5.509 16.782 Atomic orbital electron populations 1.69911 1.06365 1.26995 1.50287 1.25088 0.94671 0.98989 0.94383 0.86870 0.80345 0.83901 0.78439 1.20427 1.21496 1.18818 1.20966 0.88890 0.94611 1.50632 0.90920 1.19115 0.96690 0.93834 0.90598 1.21965 0.91374 1.00586 1.01665 1.21877 0.95121 1.02461 0.81832 1.48090 1.39352 1.28883 1.16590 1.17003 0.79416 0.81984 0.84348 1.90826 1.62699 1.34478 1.53075 1.20327 1.10573 0.86803 0.94891 1.21257 1.02553 0.99726 0.93005 1.16470 1.07056 0.90190 0.88497 1.91440 1.81842 1.79030 1.58472 1.21817 1.04786 0.96336 0.91700 1.42817 1.46012 1.10677 1.13831 0.72175 1.22418 0.99589 0.89795 0.92649 1.22200 0.90024 1.02221 1.02049 0.92598 0.94969 0.90920 0.92299 0.91749 0.89474 0.82425 0.80124 0.90634 0.91344 0.91367 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.96 55.43 0.77 -25.50 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 19.79 26.57 -169.99 -4.52 15.27 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -5.38 6.13 56.52 0.35 -5.03 16 7 C -0.51 -13.36 8.86 -34.44 -0.31 -13.67 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.68 16 9 C 0.02 0.35 1.61 -91.73 -0.15 0.20 16 10 C -0.12 -2.18 5.34 -26.61 -0.14 -2.32 16 11 C 0.11 1.74 6.44 -3.71 -0.02 1.71 16 12 N -0.60 -9.25 2.98 -174.58 -0.52 -9.77 16 13 C 0.58 9.40 7.64 -12.86 -0.10 9.30 16 14 O -0.53 -10.06 16.39 5.18 0.08 -9.97 16 15 C -0.01 -0.16 6.47 -81.98 -0.53 -0.69 16 16 C -0.14 -1.86 10.74 -39.06 -0.42 -2.28 16 17 C 0.00 0.04 7.98 -39.90 -0.32 -0.28 16 18 F -0.13 -1.63 17.32 2.25 0.04 -1.59 16 19 C -0.01 -0.10 11.90 -16.77 -0.20 -0.30 16 20 N -0.53 -5.47 4.82 -9.31 -0.04 -5.52 16 21 H 0.43 3.55 6.12 -40.82 -0.25 3.30 16 22 C 0.08 1.10 5.55 -3.93 -0.02 1.08 16 23 C -0.13 -2.28 5.08 -26.83 -0.14 -2.41 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.03 0.67 5.59 -51.93 -0.29 0.38 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 30 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.08 0.87 3.65 -51.94 -0.19 0.68 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.25 7.19 -51.93 -0.37 0.88 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 288.20 15.07 4.34 4.34 Total: -1.00 -30.89 288.20 -6.32 -37.21 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.04 Total: 3.37 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.44 Total: -7.85 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.21 Total: -40.78 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.52 Total: 15.27 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.89 -6.32 -37.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334407998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.192 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds