Wall clock time and date at job start Mon Mar 30 2020 04:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99840 * 2 1 4 4 H 1.48502 * 109.47040 * 274.65992 * 3 2 1 5 5 H 1.48495 * 109.47238 * 34.65921 * 3 2 1 6 6 H 1.48498 * 109.46960 * 154.65953 * 3 2 1 7 7 C 1.37873 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99824 * 354.82705 * 7 2 1 9 9 C 1.50703 * 120.00067 * 174.83231 * 7 2 1 10 10 C 1.53046 * 109.45946 * 215.31560 * 9 7 2 11 11 C 1.53192 * 109.31164 * 178.61375 * 10 9 7 12 12 N 1.46921 * 108.77312 * 54.63416 * 11 10 9 13 13 C 1.34778 * 120.63114 * 126.37213 * 12 11 10 14 14 O 1.21705 * 119.99709 * 359.87225 * 13 12 11 15 15 C 1.46660 * 120.00316 * 179.87613 * 13 12 11 16 16 C 1.37931 * 126.21504 * 154.98735 * 15 13 12 17 17 C 1.39924 * 107.10582 * 180.25280 * 16 15 13 18 18 F 1.35096 * 126.07502 * 179.77166 * 17 16 15 19 19 C 1.35569 * 107.84500 * 359.77047 * 17 16 15 20 20 N 1.35744 * 108.83068 * 0.02562 * 19 17 16 21 21 H 0.97003 * 125.67852 * 179.97438 * 20 19 17 22 22 C 1.46929 * 118.74187 * 306.63948 * 12 11 10 23 23 C 1.52764 * 109.00518 * 53.31345 * 22 12 11 24 24 H 0.96995 * 120.00288 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.44597 * 335.27686 * 9 7 2 26 26 H 1.09003 * 109.49390 * 58.65829 * 10 9 7 27 27 H 1.09003 * 109.49811 * 298.56588 * 10 9 7 28 28 H 1.08994 * 109.58480 * 294.84864 * 11 10 9 29 29 H 1.08997 * 109.70045 * 174.48896 * 11 10 9 30 30 H 1.08002 * 126.44436 * 0.02562 * 16 15 13 31 31 H 1.08002 * 125.58040 * 180.02562 * 19 17 16 32 32 H 1.09001 * 109.58604 * 173.14693 * 22 12 11 33 33 H 1.08994 * 109.58475 * 293.57575 * 22 12 11 34 34 H 1.08993 * 109.56452 * 185.54959 * 23 22 12 35 35 H 1.09000 * 109.36194 * 65.49833 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3981 2.1033 -1.3955 5 1 1.4993 2.6222 0.7962 6 1 3.5924 1.4138 0.5992 7 6 2.0046 -1.1940 -0.0005 8 1 1.4678 -2.1274 0.0834 9 6 3.5070 -1.1966 -0.1181 10 6 3.9523 -2.4110 -0.9362 11 6 5.4771 -2.3915 -1.0829 12 7 6.0798 -2.3109 0.2546 13 6 7.0052 -3.2092 0.6460 14 8 7.3473 -4.0993 -0.1103 15 6 7.5999 -3.1142 1.9832 16 6 8.1534 -4.1515 2.7045 17 6 8.5924 -3.6183 3.9214 18 9 9.1911 -4.3032 4.9202 19 6 8.3102 -2.2923 3.9199 20 7 7.7089 -1.9736 2.7454 21 1 7.4036 -1.0897 2.4876 22 6 5.6503 -1.2361 1.1595 23 6 4.1276 -1.2652 1.2791 24 1 -0.4850 0.8400 0.0004 25 1 3.8336 -0.2837 -0.6162 26 1 3.4912 -2.3736 -1.9232 27 1 3.6475 -3.3249 -0.4261 28 1 5.7764 -1.5243 -1.6714 29 1 5.8101 -3.3028 -1.5795 30 1 8.2298 -5.1821 2.3907 31 1 8.5281 -1.6026 4.7219 32 1 6.0956 -1.3866 2.1429 33 1 5.9640 -0.2728 0.7575 34 1 3.7914 -0.4125 1.8688 35 1 3.8212 -2.1898 1.7683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334407998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:44 Heat of formation + Delta-G solvation = -41.263986 kcal Electronic energy + Delta-G solvation = -20217.990638 eV Core-core repulsion = 16937.922880 eV Total energy + Delta-G solvation = -3280.067758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.52946 -42.63687 -40.56624 -38.57286 -35.37264 -33.58512 -32.52984 -31.74393 -30.24116 -28.31438 -25.24842 -24.29270 -23.13427 -22.06875 -21.44247 -20.76253 -19.04173 -18.91055 -17.75149 -17.01170 -16.85548 -16.40462 -16.25477 -16.18041 -15.58685 -15.09841 -14.92350 -14.79643 -14.68455 -14.50969 -14.28149 -13.99119 -13.66877 -13.20275 -12.85373 -12.72281 -12.46859 -12.13652 -11.78804 -11.55833 -11.31713 -11.10188 -11.06569 -10.64436 -10.02913 -9.74868 -9.28031 -8.25863 -6.31447 0.27920 1.37450 1.40004 1.40883 1.53301 1.73878 1.84965 2.24883 2.39361 3.09407 3.20794 3.73303 3.80346 4.03037 4.09699 4.19136 4.20968 4.27382 4.39910 4.47352 4.57817 4.72869 4.77379 4.86390 4.91766 5.07139 5.14715 5.32002 5.45270 5.54154 5.69595 5.72326 5.73199 6.21945 6.29671 6.34747 6.76604 6.94292 7.34882 8.91712 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.005088 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.998641 B = 5501.286107 C = 5997.898615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.218 1.218 7 C -0.518 4.518 8 H 0.019 0.981 9 C 0.015 3.985 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.599 5.599 13 C 0.585 3.415 14 O -0.571 6.571 15 C -0.037 4.037 16 C -0.148 4.148 17 C -0.026 4.026 18 F -0.135 7.135 19 C 0.032 3.968 20 N -0.515 5.515 21 H 0.444 0.556 22 C 0.085 3.915 23 C -0.123 4.123 24 H 0.264 0.736 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.229 0.771 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.761 2.060 6.950 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.191 4.191 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.140 1.140 7 C -0.556 4.556 8 H 0.037 0.963 9 C -0.004 4.004 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.330 5.330 13 C 0.375 3.625 14 O -0.451 6.451 15 C -0.151 4.151 16 C -0.176 4.176 17 C -0.051 4.051 18 F -0.114 7.114 19 C -0.105 4.105 20 N -0.120 5.120 21 H 0.294 0.706 22 C -0.037 4.037 23 C -0.162 4.162 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.167 0.833 31 H 0.245 0.755 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.723 1.861 6.472 19.898 hybrid contribution -0.823 0.393 -0.038 0.913 sum 17.901 2.255 6.434 19.155 Atomic orbital electron populations 1.70102 1.08807 1.28099 1.52658 1.26104 0.95441 1.03608 0.93957 0.85761 0.80784 0.77734 0.78792 1.20016 1.22025 1.13990 1.21265 0.91961 0.92590 1.49758 0.96289 1.19109 0.93165 0.95110 0.93012 1.21832 0.93822 0.98738 1.00734 1.21739 0.92564 1.03503 0.82761 1.48138 1.39121 1.29252 1.16517 1.17284 0.79171 0.81178 0.84901 1.90801 1.64035 1.35883 1.54399 1.19859 1.12517 0.88217 0.94458 1.21387 1.02472 0.99755 0.93961 1.16639 1.08757 0.91412 0.88279 1.91423 1.82086 1.79390 1.58519 1.22480 1.00840 0.95778 0.91437 1.42743 1.45440 1.10356 1.13501 0.70625 1.22492 0.96279 0.90699 0.94270 1.22010 0.93176 1.01533 0.99491 0.92709 0.93716 0.91506 0.94497 0.89254 0.89873 0.83302 0.75497 0.87809 0.88171 0.90954 0.93924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.08 13.96 21.45 0.30 -57.78 16 2 C 0.01 0.28 5.47 84.65 0.46 0.74 16 3 Si 0.95 39.45 26.57 68.60 1.82 41.28 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.22 -7.41 6.13 99.48 0.61 -6.80 16 7 C -0.52 -27.76 8.86 25.60 0.23 -27.53 16 8 H 0.02 1.17 8.06 -2.91 -0.02 1.15 16 9 C 0.02 0.61 1.61 -11.51 -0.02 0.59 16 10 C -0.11 -4.19 5.34 30.67 0.16 -4.02 16 11 C 0.12 3.51 6.44 86.36 0.56 4.06 16 12 N -0.60 -17.02 2.98 -824.47 -2.46 -19.48 16 13 C 0.59 17.88 7.64 86.44 0.66 18.54 16 14 O -0.57 -21.40 16.39 -4.36 -0.07 -21.48 16 15 C -0.04 -0.91 6.47 40.36 0.26 -0.65 16 16 C -0.15 -3.79 10.74 22.61 0.24 -3.55 16 17 C -0.03 -0.56 7.98 22.06 0.18 -0.39 16 18 F -0.14 -3.14 17.32 44.97 0.78 -2.37 16 19 C 0.03 0.46 11.90 83.47 0.99 1.45 16 20 N -0.52 -8.27 4.82 -183.38 -0.88 -9.16 16 21 H 0.44 4.69 6.12 -92.71 -0.57 4.13 16 22 C 0.08 2.01 5.55 86.22 0.48 2.49 16 23 C -0.12 -4.15 5.08 30.53 0.16 -3.99 16 24 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 25 H 0.04 1.71 5.59 -2.39 -0.01 1.70 16 26 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.08 2.61 7.00 -2.39 -0.02 2.60 16 30 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.23 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.10 1.87 3.65 -2.40 -0.01 1.86 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 2.38 7.19 -2.39 -0.02 2.36 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -72.02 288.20 4.31 -67.71 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.46 Total: 13.51 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.36 Total: -12.25 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -3.04 Total: -86.41 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.07 Total: -21.48 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.82 Total: 41.28 kcal Total: -72.02 4.31 -67.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334407998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.447 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds