Wall clock time and date at job start Mon Mar 30 2020 04:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34876 * 116.99940 * 2 1 4 4 O 1.21606 * 120.00076 * 0.02562 * 3 2 1 5 5 C 1.46635 * 119.99799 * 179.97438 * 3 2 1 6 6 C 1.36442 * 125.85573 * 179.97438 * 5 3 2 7 7 C 1.41255 * 107.00392 * 179.73723 * 6 5 3 8 8 C 1.47401 * 126.45650 * 180.28761 * 7 6 5 9 9 O 1.21608 * 119.99996 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99734 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99698 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47138 * 324.99398 * 11 10 8 13 13 C 1.52996 * 109.47355 * 84.99780 * 11 10 8 14 14 C 1.50699 * 109.46958 * 204.99824 * 11 10 8 15 15 H 1.07997 * 120.00290 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00006 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99917 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 120.00137 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47169 * 89.99677 * 18 16 14 20 20 H 1.48499 * 109.47030 * 209.99921 * 18 16 14 21 21 H 1.48502 * 109.47195 * 329.99792 * 18 16 14 22 22 C 1.38245 * 107.08758 * 0.27076 * 7 6 5 23 23 N 1.34240 * 108.41652 * 359.97438 * 22 7 6 24 24 H 0.96992 * 125.39509 * 180.02562 * 23 22 7 25 25 H 1.09003 * 109.47129 * 300.00169 * 1 2 3 26 26 H 1.09004 * 109.47467 * 59.99490 * 1 2 3 27 27 H 1.09000 * 109.47577 * 180.02562 * 1 2 3 28 28 H 1.08002 * 126.50262 * 0.02562 * 6 5 3 29 29 H 0.97004 * 120.00329 * 359.97438 * 10 8 7 30 30 H 1.09000 * 109.46873 * 300.00298 * 13 11 10 31 31 H 1.09011 * 109.47060 * 59.99875 * 13 11 10 32 32 H 1.09000 * 109.47450 * 179.97438 * 13 11 10 33 33 H 0.97003 * 119.99607 * 180.02562 * 17 16 14 34 34 H 1.07999 * 125.78913 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2216 0.0005 5 6 3.5287 1.2785 0.0006 6 6 4.2689 2.4246 0.0001 7 6 5.6277 2.0388 0.0072 8 6 6.7941 2.9400 0.0153 9 8 6.6314 4.1451 0.0169 10 7 8.0409 2.4283 0.0209 11 6 9.2002 3.3240 0.0284 12 1 8.9761 4.2133 -0.5609 13 6 9.5195 3.7331 1.4677 14 6 10.3881 2.6131 -0.5670 15 1 10.2896 1.5958 -0.9157 16 6 11.6011 3.2612 -0.6656 17 7 11.7212 4.4999 -0.2406 18 14 13.0734 2.3802 -1.4044 19 1 13.1085 2.6180 -2.8697 20 1 14.3210 2.8994 -0.7886 21 1 12.9612 0.9229 -1.1419 22 6 5.6575 0.6566 0.0054 23 7 4.3933 0.2052 -0.0017 24 1 4.1302 -0.7283 -0.0040 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.8882 3.4353 -0.0003 29 1 8.1708 1.4670 0.0200 30 1 8.6602 4.2472 1.8983 31 1 9.7436 2.8438 2.0570 32 1 10.3822 4.3991 1.4733 33 1 12.5745 4.9560 -0.3103 34 1 6.5470 0.0441 0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340221027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:26 Heat of formation + Delta-G solvation = -81.836287 kcal Electronic energy + Delta-G solvation = -19288.050111 eV Core-core repulsion = 15993.850216 eV Total energy + Delta-G solvation = -3294.199894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.62792 -40.09445 -38.31676 -36.65296 -34.71142 -32.40539 -31.39197 -30.30929 -28.76900 -27.61931 -25.22719 -23.53884 -22.96243 -20.70870 -20.27516 -19.39913 -18.91375 -17.27435 -16.67113 -16.61258 -15.97043 -15.35644 -15.08661 -14.73453 -14.12194 -13.87603 -13.69125 -13.56308 -13.21858 -12.84527 -12.51914 -12.45751 -12.18002 -11.65226 -11.12836 -11.06233 -10.96561 -10.92994 -10.70623 -10.29051 -10.20516 -9.14435 -9.10202 -9.00890 -8.53340 -8.50568 -7.83055 -6.09909 -4.19216 1.07216 2.01148 2.34703 2.88741 2.90198 3.25651 3.32187 3.33532 4.14280 4.18571 4.42385 4.64219 4.77680 4.85004 4.86561 5.05609 5.16984 5.22351 5.36261 5.90671 5.92671 6.03373 6.42962 6.61266 6.88458 7.02775 7.10196 7.20296 7.50111 7.51956 7.61393 7.74077 7.96582 8.18908 8.72485 8.82800 9.20858 9.48719 10.96118 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.046217 B = 0.003506 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.689298 B = 7984.081208 C = 8380.432245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.367 6.367 3 C 0.538 3.462 4 O -0.497 6.497 5 C -0.062 4.062 6 C -0.031 4.031 7 C -0.218 4.218 8 C 0.572 3.428 9 O -0.553 6.553 10 N -0.706 5.706 11 C 0.265 3.735 12 H 0.050 0.950 13 C -0.147 4.147 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.081 3.919 23 N -0.520 5.520 24 H 0.425 0.575 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.161 0.839 29 H 0.385 0.615 30 H 0.016 0.984 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.264 0.736 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.504 -13.474 1.101 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.284 6.284 3 C 0.384 3.616 4 O -0.385 6.385 5 C -0.171 4.171 6 C -0.057 4.057 7 C -0.228 4.228 8 C 0.357 3.643 9 O -0.433 6.433 10 N -0.353 5.353 11 C 0.163 3.837 12 H 0.068 0.932 13 C -0.206 4.206 14 C -0.572 4.572 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.061 4.061 23 N -0.114 5.114 24 H 0.264 0.736 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.178 0.822 29 H 0.217 0.783 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.798 -12.271 1.119 20.833 hybrid contribution 0.616 -1.390 -0.376 1.566 sum -16.183 -13.661 0.743 21.191 Atomic orbital electron populations 1.23271 0.75599 1.03706 1.02879 1.86537 1.24008 1.32885 1.85014 1.19827 0.86949 0.81704 0.73162 1.90921 1.65345 1.35765 1.46432 1.18837 0.86522 0.88126 1.23570 1.21184 0.90975 0.97525 0.96050 1.20110 0.94642 0.92376 1.15677 1.17340 0.82414 0.87255 0.77242 1.90744 1.86000 1.14882 1.51623 1.46367 1.05983 1.10375 1.72568 1.18741 0.80935 0.89994 0.93995 0.93240 1.22082 1.00996 1.00142 0.97391 1.21214 0.94408 1.00046 1.41510 0.92104 1.24891 0.98758 0.94908 0.95184 1.69909 1.25489 1.10858 1.45768 0.86455 0.81766 0.79618 0.79263 1.20590 1.21114 1.19901 1.22666 0.87333 0.95095 1.00983 1.41656 1.05648 1.08970 1.55167 0.73630 0.91672 0.91659 0.88012 0.82181 0.78263 0.96508 0.95511 0.89183 0.92581 0.79621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.37 -3.60 10.58 -40.98 -0.43 -4.03 16 3 C 0.54 6.81 7.93 34.12 0.27 7.08 16 4 O -0.50 -7.63 16.65 -19.35 -0.32 -7.95 16 5 C -0.06 -0.79 7.02 -82.43 -0.58 -1.37 16 6 C -0.03 -0.48 10.37 -39.08 -0.41 -0.89 16 7 C -0.22 -3.46 6.13 -105.02 -0.64 -4.11 16 8 C 0.57 11.83 7.78 -12.53 -0.10 11.74 16 9 O -0.55 -13.87 16.58 5.27 0.09 -13.79 16 10 N -0.71 -14.53 5.06 -56.02 -0.28 -14.82 16 11 C 0.26 6.74 2.56 -69.08 -0.18 6.56 16 12 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 13 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 14 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -24.85 11.32 55.43 0.63 -24.22 16 18 Si 0.90 20.41 29.54 -169.99 -5.02 15.38 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 22 C 0.08 0.89 11.43 -16.50 -0.19 0.71 16 23 N -0.52 -4.95 6.01 -9.32 -0.06 -5.00 16 24 H 0.43 2.54 8.96 -40.82 -0.37 2.17 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.16 2.58 8.06 -52.49 -0.42 2.16 16 29 H 0.39 6.52 7.45 -40.82 -0.30 6.22 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.19 1.40 7.44 -52.49 -0.39 1.01 16 LS Contribution 306.44 15.07 4.62 4.62 Total: -1.00 -34.14 306.44 -5.43 -39.57 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.85 Total: 5.11 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.80 Total: 5.13 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.29 Total: -44.04 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.67 Total: -25.76 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.14 -5.43 -39.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340221027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.266 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds