Wall clock time and date at job start Mon Mar 30 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34876 * 116.99940 * 2 1 4 4 O 1.21606 * 120.00076 * 0.02562 * 3 2 1 5 5 C 1.46635 * 119.99799 * 179.97438 * 3 2 1 6 6 C 1.36442 * 125.85573 * 179.97438 * 5 3 2 7 7 C 1.41255 * 107.00392 * 179.73723 * 6 5 3 8 8 C 1.47401 * 126.45650 * 180.28761 * 7 6 5 9 9 O 1.21608 * 119.99996 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99734 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99698 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47138 * 324.99398 * 11 10 8 13 13 C 1.52996 * 109.47355 * 84.99780 * 11 10 8 14 14 C 1.50699 * 109.46958 * 204.99824 * 11 10 8 15 15 H 1.07997 * 120.00290 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00006 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99917 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 120.00137 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47169 * 89.99677 * 18 16 14 20 20 H 1.48499 * 109.47030 * 209.99921 * 18 16 14 21 21 H 1.48502 * 109.47195 * 329.99792 * 18 16 14 22 22 C 1.38245 * 107.08758 * 0.27076 * 7 6 5 23 23 N 1.34240 * 108.41652 * 359.97438 * 22 7 6 24 24 H 0.96992 * 125.39509 * 180.02562 * 23 22 7 25 25 H 1.09003 * 109.47129 * 300.00169 * 1 2 3 26 26 H 1.09004 * 109.47467 * 59.99490 * 1 2 3 27 27 H 1.09000 * 109.47577 * 180.02562 * 1 2 3 28 28 H 1.08002 * 126.50262 * 0.02562 * 6 5 3 29 29 H 0.97004 * 120.00329 * 359.97438 * 10 8 7 30 30 H 1.09000 * 109.46873 * 300.00298 * 13 11 10 31 31 H 1.09011 * 109.47060 * 59.99875 * 13 11 10 32 32 H 1.09000 * 109.47450 * 179.97438 * 13 11 10 33 33 H 0.97003 * 119.99607 * 180.02562 * 17 16 14 34 34 H 1.07999 * 125.78913 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2216 0.0005 5 6 3.5287 1.2785 0.0006 6 6 4.2689 2.4246 0.0001 7 6 5.6277 2.0388 0.0072 8 6 6.7941 2.9400 0.0153 9 8 6.6314 4.1451 0.0169 10 7 8.0409 2.4283 0.0209 11 6 9.2002 3.3240 0.0284 12 1 8.9761 4.2133 -0.5609 13 6 9.5195 3.7331 1.4677 14 6 10.3881 2.6131 -0.5670 15 1 10.2896 1.5958 -0.9157 16 6 11.6011 3.2612 -0.6656 17 7 11.7212 4.4999 -0.2406 18 14 13.0734 2.3802 -1.4044 19 1 13.1085 2.6180 -2.8697 20 1 14.3210 2.8994 -0.7886 21 1 12.9612 0.9229 -1.1419 22 6 5.6575 0.6566 0.0054 23 7 4.3933 0.2052 -0.0017 24 1 4.1302 -0.7283 -0.0040 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.8882 3.4353 -0.0003 29 1 8.1708 1.4670 0.0200 30 1 8.6602 4.2472 1.8983 31 1 9.7436 2.8438 2.0570 32 1 10.3822 4.3991 1.4733 33 1 12.5745 4.9560 -0.3103 34 1 6.5470 0.0441 0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340221027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:25 Heat of formation + Delta-G solvation = -107.223228 kcal Electronic energy + Delta-G solvation = -19289.150971 eV Core-core repulsion = 15993.850216 eV Total energy + Delta-G solvation = -3295.300755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.66697 -41.07368 -39.97413 -37.58142 -36.62998 -34.30353 -32.60550 -31.50376 -30.36274 -28.42611 -27.28907 -24.81790 -24.10960 -22.32105 -21.40673 -20.77576 -20.21905 -18.40077 -18.15184 -17.54050 -17.24634 -17.01197 -16.55783 -15.99623 -15.79885 -15.08169 -14.83672 -14.70277 -14.41246 -14.35637 -14.15094 -13.62802 -13.45348 -13.07235 -12.90949 -12.84171 -12.70266 -12.20985 -12.08342 -11.94782 -11.89013 -11.05726 -10.85165 -10.54516 -10.27757 -9.76176 -9.46741 -8.12346 -6.29927 0.07520 0.79607 1.47486 1.49553 1.50346 1.60813 1.85193 2.01269 2.41027 2.63831 2.75696 3.18678 3.76344 3.86895 4.06604 4.21743 4.30175 4.33070 4.63651 4.72993 4.81741 4.85269 4.99347 5.14154 5.15684 5.28959 5.48687 5.51716 5.67026 5.75612 5.98420 6.14997 6.34735 6.56356 6.78535 7.07481 7.38009 7.65316 8.94360 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.046217 B = 0.003506 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.689298 B = 7984.081208 C = 8380.432245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.543 3.457 4 O -0.532 6.532 5 C -0.057 4.057 6 C -0.056 4.056 7 C -0.259 4.259 8 C 0.570 3.430 9 O -0.611 6.611 10 N -0.696 5.696 11 C 0.271 3.729 12 H -0.005 1.005 13 C -0.135 4.135 14 C -0.543 4.543 15 H 0.081 0.919 16 C 0.011 3.989 17 N -0.921 5.921 18 Si 0.974 3.026 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.254 1.254 22 C 0.130 3.870 23 N -0.489 5.489 24 H 0.449 0.551 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.140 0.860 28 H 0.136 0.864 29 H 0.407 0.593 30 H 0.008 0.992 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.264 0.736 34 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.680 -17.846 0.855 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.390 3.610 4 O -0.422 6.422 5 C -0.166 4.166 6 C -0.083 4.083 7 C -0.268 4.268 8 C 0.359 3.641 9 O -0.495 6.495 10 N -0.345 5.345 11 C 0.167 3.833 12 H 0.013 0.987 13 C -0.194 4.194 14 C -0.581 4.581 15 H 0.099 0.901 16 C -0.189 4.189 17 N -0.559 5.559 18 Si 0.799 3.201 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.178 1.178 22 C -0.015 4.015 23 N -0.085 5.085 24 H 0.292 0.708 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.158 0.842 28 H 0.154 0.846 29 H 0.243 0.757 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -17.022 -16.752 0.876 23.899 hybrid contribution 0.537 -0.071 -0.297 0.618 sum -16.485 -16.823 0.580 23.560 Atomic orbital electron populations 1.23635 0.73677 1.06172 1.02779 1.86526 1.25755 1.30825 1.84209 1.19790 0.86826 0.82055 0.72378 1.90912 1.66050 1.37164 1.48051 1.18617 0.86963 0.88116 1.22923 1.21076 0.91675 0.97772 0.97730 1.19607 0.92575 0.94044 1.20539 1.17972 0.83398 0.87188 0.75534 1.90706 1.86836 1.17795 1.54166 1.46002 1.04892 1.10909 1.72673 1.18341 0.82622 0.89159 0.93178 0.98728 1.21913 0.99582 1.00256 0.97615 1.21570 0.94427 1.00826 1.41280 0.90145 1.25850 1.01966 0.95527 0.95532 1.70077 1.26180 1.12626 1.47041 0.85310 0.77582 0.79269 0.77939 1.20606 1.21331 1.17806 1.23111 0.88870 0.93167 0.96392 1.41595 1.04613 1.09526 1.52812 0.70773 0.91835 0.91848 0.84213 0.84585 0.75707 0.97251 0.93631 0.91590 0.92671 0.75016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.53 16 2 O -0.36 -5.99 10.58 -57.90 -0.61 -6.60 16 3 C 0.54 13.02 7.93 70.01 0.56 13.58 16 4 O -0.53 -16.37 16.65 19.49 0.32 -16.05 16 5 C -0.06 -1.36 7.02 39.97 0.28 -1.08 16 6 C -0.06 -1.77 10.37 22.59 0.23 -1.53 16 7 C -0.26 -7.99 6.13 -20.12 -0.12 -8.12 16 8 C 0.57 24.14 7.78 86.66 0.67 24.81 16 9 O -0.61 -32.69 16.58 -4.06 -0.07 -32.75 16 10 N -0.70 -28.42 5.06 -449.40 -2.27 -30.70 16 11 C 0.27 14.07 2.56 44.24 0.11 14.19 16 12 H -0.01 -0.33 7.58 -2.39 -0.02 -0.34 16 13 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 14 C -0.54 -28.07 8.73 25.60 0.22 -27.85 16 15 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 16 C 0.01 0.58 5.30 84.65 0.45 1.03 16 17 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 18 Si 0.97 41.15 29.54 68.60 2.03 43.17 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 22 C 0.13 2.33 11.43 84.33 0.96 3.29 16 23 N -0.49 -7.32 6.01 -183.40 -1.10 -8.42 16 24 H 0.45 2.92 8.96 -92.71 -0.83 2.09 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 29 H 0.41 12.71 7.45 -92.71 -0.69 12.02 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.64 16 34 H 0.23 1.99 7.44 -2.91 -0.02 1.97 16 Total: -1.00 -79.58 306.44 3.40 -76.17 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -0.37 Total: 14.37 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.23 Total: 13.60 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -3.13 Total: -91.92 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -0.36 Total: -55.40 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -79.58 3.40 -76.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340221027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.049 kcal (2) G-P(sol) polarization free energy of solvation -79.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds