Wall clock time and date at job start Mon Mar 30 2020 05:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35035 * 126.38431 * 2 1 4 4 H 0.97006 * 124.88113 * 0.04931 * 3 2 1 5 5 N 1.28466 * 110.22776 * 179.74861 * 3 2 1 6 6 C 1.31808 * 110.07398 * 0.46151 * 5 3 2 7 7 C 1.47712 * 126.51399 * 179.81974 * 6 5 3 8 8 O 1.21573 * 119.99767 * 179.68436 * 7 6 5 9 9 N 1.34777 * 120.00297 * 359.68663 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27851 * 9 7 6 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 O 1.21284 * 120.00579 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99600 * 179.97438 * 11 10 9 14 14 C 1.37103 * 119.99831 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99608 * 0.02562 * 14 13 11 16 16 C 1.38942 * 119.99955 * 179.97438 * 14 13 11 17 17 N 1.31413 * 120.00215 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00318 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47111 * 89.99402 * 18 16 14 20 20 H 1.48496 * 109.47580 * 210.00183 * 18 16 14 21 21 H 1.48511 * 109.47045 * 329.99948 * 18 16 14 22 22 C 1.35361 * 126.38510 * 180.02562 * 2 1 3 23 23 C 1.50696 * 127.25059 * 359.97004 * 22 2 1 24 24 H 1.09006 * 109.46844 * 269.96716 * 1 2 3 25 25 H 1.08995 * 109.47752 * 29.97052 * 1 2 3 26 26 H 1.09000 * 109.47587 * 149.97616 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 28 28 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 29 29 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 30 30 H 0.96995 * 120.00445 * 0.02562 * 13 11 10 31 31 H 0.96999 * 120.00073 * 180.02562 * 17 16 14 32 32 H 1.08997 * 109.47334 * 269.98295 * 23 22 2 33 33 H 1.08999 * 109.47248 * 29.98400 * 23 22 2 34 34 H 1.09003 * 109.47322 * 149.97983 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9964 2.0058 0.0007 5 7 3.5419 0.7296 0.0053 6 6 3.6320 -0.5853 -0.0009 7 6 4.8765 -1.3811 -0.0016 8 8 4.8214 -2.5955 -0.0019 9 7 6.0730 -0.7608 -0.0018 10 6 7.3072 -1.5501 -0.0086 11 6 8.4958 -0.6236 -0.0142 12 8 8.3285 0.5776 -0.0131 13 7 9.7448 -1.1301 -0.0204 14 6 10.8262 -0.2873 -0.0260 15 1 10.6772 0.7824 -0.0250 16 6 12.1138 -0.8093 -0.0318 17 7 13.1504 -0.0016 -0.0367 18 14 12.3717 -2.6595 -0.0327 19 1 12.4334 -3.1499 -1.4330 20 1 13.6440 -2.9824 0.6615 21 1 11.2423 -3.3170 0.6727 22 6 2.3100 -1.0897 -0.0005 23 6 1.8854 -2.5356 -0.0005 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8897 -0.5142 27 1 6.1170 0.2082 -0.0018 28 1 7.3410 -2.1792 0.8810 29 1 7.3319 -2.1782 -0.8990 30 1 9.8787 -2.0908 -0.0216 31 1 14.0493 -0.3661 -0.0412 32 1 1.7837 -2.8845 1.0271 33 1 0.9287 -2.6334 -0.5137 34 1 2.6366 -3.1349 -0.5151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343521278.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:21 Heat of formation + Delta-G solvation = -33.201356 kcal Electronic energy + Delta-G solvation = -19275.452491 eV Core-core repulsion = 16015.654317 eV Total energy + Delta-G solvation = -3259.798174 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.73518 -40.92321 -39.86073 -36.32389 -35.44489 -34.38656 -33.85861 -33.45833 -30.01670 -28.92482 -27.01040 -26.54305 -24.53753 -21.51126 -21.23779 -20.93638 -20.45767 -18.55660 -18.38750 -17.40857 -17.15814 -16.79783 -16.56150 -16.52780 -15.46306 -15.34891 -14.90240 -14.66551 -14.33038 -14.03409 -13.93555 -13.84803 -13.73930 -13.49893 -12.98103 -12.96572 -12.89048 -12.45171 -11.99970 -11.81220 -11.58967 -11.21079 -10.68189 -10.47040 -10.33845 -10.13494 -9.64248 -8.46135 -6.08575 0.46678 1.09276 1.31399 1.34305 1.44493 1.77433 1.79889 2.14492 2.20852 2.29482 2.84518 3.09872 3.38289 3.76716 3.95183 4.08338 4.28309 4.34529 4.39703 4.43578 4.78500 4.90965 4.95573 5.05361 5.11708 5.17706 5.27495 5.47870 5.58109 5.86798 6.12228 6.38624 6.48047 6.77039 6.84606 7.06443 7.27835 7.77335 8.70488 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.045689 B = 0.003574 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.698039 B = 7832.173715 C = 8419.105199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.026 3.974 3 N -0.364 5.364 4 H 0.461 0.539 5 N -0.279 5.279 6 C -0.040 4.040 7 C 0.602 3.398 8 O -0.556 6.556 9 N -0.702 5.702 10 C 0.117 3.883 11 C 0.444 3.556 12 O -0.616 6.616 13 N -0.576 5.576 14 C -0.333 4.333 15 H 0.061 0.939 16 C -0.008 4.008 17 N -0.926 5.926 18 Si 0.961 3.039 19 H -0.255 1.255 20 H -0.273 1.273 21 H -0.231 1.231 22 C -0.170 4.170 23 C -0.073 4.073 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.413 0.587 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.393 0.607 31 H 0.282 0.718 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.764 -5.529 0.051 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 N -0.081 5.081 4 H 0.309 0.691 5 N -0.116 5.116 6 C -0.200 4.200 7 C 0.388 3.612 8 O -0.433 6.433 9 N -0.356 5.356 10 C -0.010 4.010 11 C 0.231 3.769 12 O -0.502 6.502 13 N -0.216 5.216 14 C -0.462 4.462 15 H 0.079 0.921 16 C -0.208 4.208 17 N -0.566 5.566 18 Si 0.780 3.220 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.155 1.155 22 C -0.180 4.180 23 C -0.130 4.130 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.251 0.749 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.229 0.771 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.963 -4.624 0.059 26.372 hybrid contribution 0.632 -0.119 0.015 0.643 sum -25.331 -4.743 0.073 25.771 Atomic orbital electron populations 1.20546 0.82926 1.05621 1.04804 1.21816 0.97014 0.85601 1.05640 1.43343 1.02021 1.10721 1.52041 0.69101 1.73564 1.03534 1.14738 1.19751 1.21709 0.94929 0.90289 1.13034 1.17111 0.81827 0.86404 0.75897 1.90721 1.87151 1.13371 1.52063 1.45642 1.04349 1.11841 1.73739 1.20977 0.81525 0.92805 1.05674 1.20499 0.84770 0.89190 0.82436 1.90539 1.85681 1.17568 1.56369 1.41897 1.04793 1.08658 1.66229 1.19032 0.84882 0.91379 1.50899 0.92053 1.26094 0.93852 1.05278 0.95589 1.69785 0.99465 1.38148 1.49218 0.85418 0.79925 0.76454 0.80155 1.17977 1.19750 1.15465 1.20444 0.89833 0.98323 1.09417 1.20166 1.01893 0.88415 1.02565 0.88748 0.88836 0.88359 0.74884 0.87199 0.87116 0.77079 0.90869 0.91218 0.89080 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.26 71.24 0.73 0.27 16 2 C 0.03 0.42 7.23 41.40 0.30 0.72 16 3 N -0.36 -6.50 6.83 -47.93 -0.33 -6.82 16 4 H 0.46 4.42 8.96 -219.99 -1.97 2.44 16 5 N -0.28 -7.68 11.92 -48.18 -0.57 -8.26 16 6 C -0.04 -1.21 7.13 42.46 0.30 -0.91 16 7 C 0.60 20.71 7.82 86.75 0.68 21.39 16 8 O -0.56 -20.29 15.12 -3.95 -0.06 -20.35 16 9 N -0.70 -25.20 5.52 -469.84 -2.60 -27.79 16 10 C 0.12 4.13 6.15 85.63 0.53 4.65 16 11 C 0.44 20.38 7.85 87.66 0.69 21.06 16 12 O -0.62 -33.71 15.24 -3.04 -0.05 -33.76 16 13 N -0.58 -27.28 5.09 -306.99 -1.56 -28.84 16 14 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 15 H 0.06 4.22 7.39 -2.91 -0.02 4.19 16 16 C -0.01 -0.45 5.50 84.92 0.47 0.01 16 17 N -0.93 -55.23 13.96 21.66 0.30 -54.93 16 18 Si 0.96 38.60 27.74 68.60 1.90 40.50 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 22 C -0.17 -3.97 6.25 -19.73 -0.12 -4.09 16 23 C -0.07 -1.42 9.73 71.23 0.69 -0.73 16 24 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 25 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.10 0.41 7.31 -2.39 -0.02 0.39 16 27 H 0.41 15.86 7.16 -92.71 -0.66 15.19 16 28 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 29 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 30 H 0.39 15.50 5.76 -92.71 -0.53 14.97 16 31 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.15 7.31 -2.39 -0.02 1.13 16 34 H 0.06 1.45 6.72 -2.39 -0.02 1.44 16 Total: -1.00 -80.09 299.87 0.11 -79.98 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -2.05 Total: 36.39 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 5.12 Total: 23.87 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -4.76 Total: -126.64 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -0.11 Total: -54.11 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Total: -80.09 0.11 -79.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521278.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.782 kcal (2) G-P(sol) polarization free energy of solvation -80.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds