Wall clock time and date at job start Mon Mar 30 2020 04:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 5 5 C 1.34770 * 120.00092 * 274.99977 * 4 2 1 6 6 O 1.21702 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.46659 * 120.00210 * 179.97438 * 5 4 2 8 8 C 1.36538 * 125.99144 * 179.97438 * 7 5 4 9 9 C 1.40369 * 106.70998 * 179.97438 * 8 7 5 10 10 C 1.35126 * 107.11015 * 0.02562 * 9 8 7 11 11 O 1.33928 * 108.77041 * 359.75090 * 10 9 8 12 12 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 13 13 O 1.21283 * 120.00472 * 240.00297 * 12 2 1 14 14 N 1.34777 * 119.99538 * 59.99635 * 12 2 1 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 2 16 16 C 1.50703 * 109.47138 * 180.28062 * 15 14 12 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00502 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99575 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47245 * 60.00392 * 20 18 16 22 22 H 1.48504 * 109.46709 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47176 * 299.99915 * 20 18 16 24 24 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 26 26 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 27 27 H 0.96996 * 119.99554 * 95.00338 * 4 2 1 28 28 H 1.08001 * 126.64477 * 0.02562 * 8 7 5 29 29 H 1.07992 * 126.44092 * 180.02562 * 9 8 7 30 30 H 1.08009 * 125.61505 * 180.02562 * 10 9 8 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 32 32 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 33 33 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 34 34 H 0.96997 * 120.00009 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8572 1.1626 2.4118 7 6 2.6354 -0.7095 3.5548 8 6 2.8125 -0.1505 4.7879 9 6 3.2909 -1.1685 5.6276 10 6 3.3842 -2.2899 4.8795 11 8 2.9835 -2.0106 3.6325 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.2000 -0.9372 -3.6506 16 6 1.7023 -0.2236 -4.8811 17 1 1.0802 0.6537 -4.7821 18 6 2.0401 -0.6915 -6.1333 19 7 2.7963 -1.7607 -6.2540 20 14 1.4224 0.1926 -7.6586 21 1 1.9168 1.5929 -7.6534 22 1 1.9216 -0.5046 -8.8710 23 1 -0.0626 0.1920 -7.6639 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.2490 -1.6317 1.1527 28 1 2.6207 0.8759 5.0639 29 1 3.5379 -1.0732 6.6746 30 1 3.7217 -3.2539 5.2307 31 1 1.1493 0.5388 -2.5436 32 1 3.2901 -0.9367 -3.6464 33 1 1.8372 -1.9650 -3.6549 34 1 3.0342 -2.0895 -7.1350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343899228.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:08 Heat of formation + Delta-G solvation = -63.999506 kcal Electronic energy + Delta-G solvation = -19304.547025 eV Core-core repulsion = 16011.120592 eV Total energy + Delta-G solvation = -3293.426434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.87303 -40.01441 -38.63047 -35.06176 -34.30984 -33.28406 -32.51716 -31.24215 -29.55303 -27.26172 -24.85279 -23.38149 -22.15008 -21.84937 -20.38902 -19.82910 -18.93323 -17.24088 -16.60899 -16.48051 -16.17785 -15.44411 -15.16586 -14.89166 -14.53424 -14.29107 -13.76388 -13.41275 -13.21266 -13.09311 -12.87684 -12.64932 -12.28710 -12.04635 -11.80015 -11.47209 -11.04937 -10.90213 -10.43579 -10.35155 -10.29615 -9.48464 -9.45901 -9.10555 -8.86554 -8.79241 -8.01008 -6.20794 -4.28293 0.87611 2.12745 2.47701 3.00749 3.05176 3.17140 3.23533 3.28552 3.29926 3.95848 4.32134 4.48079 4.66348 4.79130 5.11664 5.13984 5.16014 5.29318 5.39520 5.52266 5.62446 5.67243 5.80871 6.07290 6.15226 6.24775 6.61064 7.20662 7.27128 7.41486 7.43805 7.58619 7.90468 7.97189 8.48231 8.67709 8.92883 9.38201 10.89301 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047068 B = 0.003342 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.738188 B = 8377.000152 C = 8776.568580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.114 0.886 4 N -0.696 5.696 5 C 0.605 3.395 6 O -0.525 6.525 7 C -0.074 4.074 8 C -0.123 4.123 9 C -0.228 4.228 10 C -0.006 4.006 11 O -0.160 6.160 12 C 0.496 3.504 13 O -0.552 6.552 14 N -0.702 5.702 15 C 0.250 3.750 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.415 0.585 28 H 0.160 0.840 29 H 0.156 0.844 30 H 0.210 0.790 31 H 0.393 0.607 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 1.251 20.420 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 H 0.132 0.868 4 N -0.348 5.348 5 C 0.391 3.609 6 O -0.403 6.403 7 C -0.126 4.126 8 C -0.143 4.143 9 C -0.247 4.247 10 C -0.076 4.076 11 O -0.055 6.055 12 C 0.279 3.721 13 O -0.431 6.431 14 N -0.350 5.350 15 C 0.129 3.871 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.523 5.523 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.253 0.747 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.227 0.773 31 H 0.227 0.773 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.775 1.042 20.040 20.146 hybrid contribution -0.305 0.340 -0.706 0.841 sum -2.079 1.383 19.335 19.495 Atomic orbital electron populations 1.22116 0.92752 1.03263 1.03506 1.20931 0.95777 0.98141 0.83873 0.86843 1.45665 1.65707 1.15217 1.08244 1.16506 0.77707 0.85649 0.81057 1.90875 1.51199 1.14148 1.84124 1.22064 1.10800 0.82565 0.97159 1.21969 1.00018 1.01249 0.91101 1.21859 1.08141 0.92918 1.01778 1.24448 1.00812 1.00977 0.81377 1.84115 1.63534 1.26358 1.31499 1.20320 0.81455 0.85271 0.85047 1.90668 1.38984 1.26839 1.86630 1.46419 1.51162 1.31242 1.06192 1.19167 0.95376 0.92975 0.79563 1.21176 1.33425 1.13318 0.90491 0.91813 1.24948 0.94770 0.94959 0.99262 1.69958 1.35452 1.22442 1.24405 0.86457 0.79154 0.79639 0.81570 1.20005 1.21056 1.20018 0.91679 0.91165 0.90398 0.74688 0.82188 0.82602 0.77324 0.77325 0.95348 0.95291 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.38 37.16 0.35 -1.64 16 2 C 0.12 1.82 2.98 -69.08 -0.21 1.61 16 3 H 0.11 1.66 7.58 -51.93 -0.39 1.27 16 4 N -0.70 -10.25 4.95 -56.25 -0.28 -10.53 16 5 C 0.60 8.87 7.75 -12.86 -0.10 8.77 16 6 O -0.53 -8.71 16.53 5.19 0.09 -8.63 16 7 C -0.07 -0.94 7.13 -36.80 -0.26 -1.20 16 8 C -0.12 -1.33 10.62 -39.39 -0.42 -1.75 16 9 C -0.23 -1.90 10.88 -39.89 -0.43 -2.33 16 10 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 11 O -0.16 -1.85 10.40 5.01 0.05 -1.80 16 12 C 0.50 9.52 7.22 -10.99 -0.08 9.45 16 13 O -0.55 -12.58 15.84 5.55 0.09 -12.49 16 14 N -0.70 -14.19 5.44 -61.47 -0.33 -14.53 16 15 C 0.25 6.43 5.43 -5.19 -0.03 6.41 16 16 C -0.55 -14.49 9.28 -34.44 -0.32 -14.81 16 17 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 20 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.88 7.56 -51.93 -0.39 0.49 16 27 H 0.42 6.14 7.55 -40.82 -0.31 5.83 16 28 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 30 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.39 6.78 7.74 -40.82 -0.32 6.46 16 32 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -32.84 308.57 -5.16 -38.00 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.90 Total: 8.26 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.24 Total: 6.48 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.12 Total: -50.03 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.23 Total: -22.92 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.84 -5.16 -38.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343899228.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.995 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds