Wall clock time and date at job start Mon Mar 30 2020 04:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 5 5 C 1.34770 * 120.00092 * 274.99977 * 4 2 1 6 6 O 1.21702 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.46659 * 120.00210 * 179.97438 * 5 4 2 8 8 C 1.36538 * 125.99144 * 179.97438 * 7 5 4 9 9 C 1.40369 * 106.70998 * 179.97438 * 8 7 5 10 10 C 1.35126 * 107.11015 * 0.02562 * 9 8 7 11 11 O 1.33928 * 108.77041 * 359.75090 * 10 9 8 12 12 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 13 13 O 1.21283 * 120.00472 * 240.00297 * 12 2 1 14 14 N 1.34777 * 119.99538 * 59.99635 * 12 2 1 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 2 16 16 C 1.50703 * 109.47138 * 180.28062 * 15 14 12 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00502 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99575 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47245 * 60.00392 * 20 18 16 22 22 H 1.48504 * 109.46709 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47176 * 299.99915 * 20 18 16 24 24 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 26 26 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 27 27 H 0.96996 * 119.99554 * 95.00338 * 4 2 1 28 28 H 1.08001 * 126.64477 * 0.02562 * 8 7 5 29 29 H 1.07992 * 126.44092 * 180.02562 * 9 8 7 30 30 H 1.08009 * 125.61505 * 180.02562 * 10 9 8 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 32 32 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 33 33 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 34 34 H 0.96997 * 120.00009 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8572 1.1626 2.4118 7 6 2.6354 -0.7095 3.5548 8 6 2.8125 -0.1505 4.7879 9 6 3.2909 -1.1685 5.6276 10 6 3.3842 -2.2899 4.8795 11 8 2.9835 -2.0106 3.6325 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.2000 -0.9372 -3.6506 16 6 1.7023 -0.2236 -4.8811 17 1 1.0802 0.6537 -4.7821 18 6 2.0401 -0.6915 -6.1333 19 7 2.7963 -1.7607 -6.2540 20 14 1.4224 0.1926 -7.6586 21 1 1.9168 1.5929 -7.6534 22 1 1.9216 -0.5046 -8.8710 23 1 -0.0626 0.1920 -7.6639 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.2490 -1.6317 1.1527 28 1 2.6207 0.8759 5.0639 29 1 3.5379 -1.0732 6.6746 30 1 3.7217 -3.2539 5.2307 31 1 1.1493 0.5388 -2.5436 32 1 3.2901 -0.9367 -3.6464 33 1 1.8372 -1.9650 -3.6549 34 1 3.0342 -2.0895 -7.1350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343899228.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:07 Heat of formation + Delta-G solvation = -89.374042 kcal Electronic energy + Delta-G solvation = -19305.647348 eV Core-core repulsion = 16011.120592 eV Total energy + Delta-G solvation = -3294.526756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.65878 -41.36380 -40.06557 -36.44737 -36.07114 -34.46715 -34.05041 -32.42959 -30.49732 -29.16239 -26.10772 -24.90488 -23.52494 -22.69606 -21.44612 -21.34458 -20.07709 -18.77513 -17.78810 -17.65752 -17.37572 -16.93467 -16.75182 -16.41281 -15.94243 -15.63954 -15.12117 -14.71092 -14.29940 -14.13077 -14.01113 -13.93805 -13.58352 -13.49897 -13.35262 -12.95687 -12.72901 -12.66581 -12.23862 -11.59319 -11.50682 -11.05301 -10.94836 -10.80364 -10.43786 -9.91617 -9.67939 -8.29390 -6.45785 -0.00728 1.41324 1.44129 1.47713 1.53391 1.55585 1.57636 1.98172 2.05592 2.34116 2.53432 3.05922 3.57768 3.75178 3.96094 3.96614 4.05503 4.11157 4.57523 4.62934 4.73036 4.90358 4.94574 5.05064 5.12371 5.14202 5.22671 5.40196 5.42472 5.62371 5.82561 5.82723 6.29379 6.63007 6.73026 6.86970 7.19755 7.34479 8.82420 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047068 B = 0.003342 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.738188 B = 8377.000152 C = 8776.568580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 H 0.122 0.878 4 N -0.700 5.700 5 C 0.606 3.394 6 O -0.551 6.551 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.232 4.232 10 C 0.008 3.992 11 O -0.178 6.178 12 C 0.497 3.503 13 O -0.590 6.590 14 N -0.695 5.695 15 C 0.266 3.734 16 C -0.558 4.558 17 H 0.085 0.915 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.286 1.286 23 H -0.261 1.261 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.414 0.586 28 H 0.165 0.835 29 H 0.188 0.812 30 H 0.253 0.747 31 H 0.411 0.589 32 H -0.010 1.010 33 H -0.006 1.006 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 2.183 21.602 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 H 0.140 0.860 4 N -0.351 5.351 5 C 0.395 3.605 6 O -0.432 6.432 7 C -0.166 4.166 8 C -0.138 4.138 9 C -0.250 4.250 10 C -0.061 4.061 11 O -0.073 6.073 12 C 0.283 3.717 13 O -0.472 6.472 14 N -0.345 5.345 15 C 0.144 3.856 16 C -0.595 4.595 17 H 0.103 0.897 18 C -0.194 4.194 19 N -0.569 5.569 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.212 1.212 23 H -0.186 1.186 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.251 0.749 28 H 0.183 0.817 29 H 0.205 0.795 30 H 0.269 0.731 31 H 0.247 0.753 32 H 0.008 0.992 33 H 0.012 0.988 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.700 2.008 21.257 21.521 hybrid contribution 0.053 -0.038 -0.912 0.914 sum -2.648 1.970 20.345 20.611 Atomic orbital electron populations 1.22105 0.90405 1.03625 1.04791 1.20852 0.97359 0.97509 0.81761 0.86022 1.45703 1.66041 1.15110 1.08284 1.16722 0.77027 0.85428 0.81371 1.90842 1.52566 1.15108 1.84680 1.21777 1.14196 0.83594 0.97062 1.22288 0.98574 1.02075 0.90860 1.22246 1.07730 0.91969 1.03066 1.25435 0.98143 1.02632 0.79917 1.84105 1.64084 1.25800 1.33343 1.21046 0.80229 0.84632 0.85805 1.90647 1.40537 1.28719 1.87267 1.46105 1.51548 1.31631 1.05208 1.18612 0.93017 0.91964 0.82029 1.21591 1.33420 1.13847 0.90679 0.89667 1.26027 0.94706 0.95606 1.03078 1.70118 1.37026 1.24380 1.25336 0.85234 0.79051 0.78460 0.76656 1.18773 1.21195 1.18586 0.91799 0.90124 0.88807 0.74870 0.81696 0.79474 0.73117 0.75252 0.99208 0.98785 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.38 71.98 0.68 -2.92 16 2 C 0.13 3.97 2.98 44.24 0.13 4.10 16 3 H 0.12 3.48 7.58 -2.39 -0.02 3.46 16 4 N -0.70 -20.81 4.95 -450.08 -2.23 -23.04 16 5 C 0.61 17.87 7.75 86.44 0.67 18.54 16 6 O -0.55 -18.27 16.53 -4.36 -0.07 -18.34 16 7 C -0.11 -2.89 7.13 24.07 0.17 -2.72 16 8 C -0.12 -2.39 10.62 22.39 0.24 -2.15 16 9 C -0.23 -3.20 10.88 22.07 0.24 -2.96 16 10 C 0.01 0.11 12.08 67.10 0.81 0.92 16 11 O -0.18 -3.94 10.40 -4.98 -0.05 -3.99 16 12 C 0.50 19.45 7.22 87.66 0.63 20.08 16 13 O -0.59 -27.95 15.84 -3.04 -0.05 -28.00 16 14 N -0.70 -28.41 5.44 -466.78 -2.54 -30.95 16 15 C 0.27 14.23 5.43 85.63 0.46 14.69 16 16 C -0.56 -29.66 9.28 25.60 0.24 -29.42 16 17 H 0.09 4.07 7.60 -2.91 -0.02 4.04 16 18 C 0.01 0.31 5.46 84.66 0.46 0.77 16 19 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 20 Si 0.98 41.72 29.54 68.60 2.03 43.75 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.09 1.93 7.56 -2.39 -0.02 1.91 16 27 H 0.41 12.59 7.55 -92.71 -0.70 11.89 16 28 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 29 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 30 H 0.25 0.88 8.06 -2.91 -0.02 0.86 16 31 H 0.41 13.77 7.74 -92.71 -0.72 13.06 16 32 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -73.51 308.57 1.83 -71.67 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -0.27 Total: 25.01 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 4.73 Total: 18.92 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -4.48 Total: -109.03 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.17 Total: -50.33 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -73.51 1.83 -71.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343899228.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.700 kcal (2) G-P(sol) polarization free energy of solvation -73.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds