Wall clock time and date at job start Mon Mar 30 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34878 * 117.00198 * 2 1 4 4 O 1.21603 * 119.99518 * 0.02562 * 3 2 1 5 5 C 1.46630 * 120.00306 * 179.97438 * 3 2 1 6 6 C 1.36445 * 125.86016 * 180.25375 * 5 3 2 7 7 C 1.41250 * 107.00577 * 180.13741 * 6 5 3 8 8 C 1.47398 * 126.45455 * 179.89843 * 7 6 5 9 9 O 1.21604 * 119.99857 * 359.70751 * 8 7 6 10 10 N 1.34779 * 119.99899 * 179.70999 * 8 7 6 11 11 C 1.46499 * 119.99872 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 C 1.38241 * 107.08929 * 359.62680 * 7 6 5 22 22 N 1.34234 * 108.41525 * 0.23439 * 21 7 6 23 23 H 0.96998 * 125.40012 * 179.97438 * 22 21 7 24 24 H 1.08998 * 109.46909 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47288 * 300.00021 * 1 2 3 26 26 H 1.08996 * 109.46934 * 60.00134 * 1 2 3 27 27 H 1.08003 * 126.49777 * 359.97438 * 6 5 3 28 28 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 29 29 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 30 30 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 31 31 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 33 33 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 34 34 H 1.08006 * 125.79447 * 180.26027 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2216 0.0005 5 6 3.5286 1.2785 0.0006 6 6 4.2689 2.4247 0.0055 7 6 5.6277 2.0388 0.0009 8 6 6.7941 2.9400 0.0016 9 8 6.6313 4.1451 0.0012 10 7 8.0410 2.4284 0.0027 11 6 9.2002 3.3242 0.0028 12 6 10.4857 2.4945 0.0034 13 6 11.6783 3.4160 0.0042 14 1 11.5337 4.4862 0.0038 15 6 12.9538 2.8925 0.0054 16 7 13.1299 1.5893 0.0063 17 14 14.4320 4.0347 0.0056 18 1 14.3948 4.8920 1.2177 19 1 15.6798 3.2294 0.0076 20 1 14.3965 4.8905 -1.2074 21 6 5.6576 0.6567 0.0018 22 7 4.3934 0.2053 0.0015 23 1 4.1301 -0.7283 0.0017 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8882 3.4353 0.0093 28 1 8.1708 1.4672 0.0033 29 1 9.1731 3.9535 0.8924 30 1 9.1741 3.9523 -0.8876 31 1 10.5121 1.8660 0.8936 32 1 10.5127 1.8655 -0.8863 33 1 14.0273 1.2210 0.0075 34 1 6.5470 0.0441 0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346390446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:07 Heat of formation + Delta-G solvation = -88.942424 kcal Electronic energy + Delta-G solvation = -18752.538227 eV Core-core repulsion = 15458.030188 eV Total energy + Delta-G solvation = -3294.508040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.80523 -40.22353 -38.65850 -36.75960 -34.80452 -32.85681 -31.64617 -30.54508 -29.38799 -27.85705 -25.05081 -23.45368 -22.78662 -20.94954 -20.55658 -19.79897 -18.97452 -17.37722 -16.77455 -16.54043 -16.06306 -15.90305 -15.07931 -14.88611 -14.45152 -14.36763 -14.00380 -13.75047 -13.43715 -13.03068 -12.86073 -12.60447 -12.50820 -12.25151 -11.21629 -11.19822 -11.04567 -11.01106 -10.64983 -10.30978 -9.83825 -9.48519 -9.34324 -9.22222 -8.73204 -8.49355 -8.29553 -6.09080 -4.11489 0.93353 1.76523 2.23640 2.73092 2.75307 3.32228 3.35772 3.39181 3.78065 3.79062 4.42738 4.49880 4.67699 4.70823 4.79613 4.83799 5.05920 5.17120 5.28194 5.64260 5.72092 5.90729 6.20075 6.38956 6.41841 6.43543 6.77237 6.92031 6.97593 7.38592 7.52884 7.62760 7.89670 8.07654 8.29624 8.73438 8.94494 9.53298 11.02537 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.062495 B = 0.002833 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.931485 B = 9879.546248 C =10301.728614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.366 6.366 3 C 0.538 3.462 4 O -0.496 6.496 5 C -0.059 4.059 6 C -0.030 4.030 7 C -0.225 4.225 8 C 0.578 3.422 9 O -0.549 6.549 10 N -0.719 5.719 11 C 0.122 3.878 12 C 0.013 3.987 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.086 3.914 22 N -0.517 5.517 23 H 0.427 0.573 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.162 0.838 28 H 0.394 0.606 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.544 -9.309 -0.003 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.284 6.284 3 C 0.383 3.617 4 O -0.383 6.383 5 C -0.168 4.168 6 C -0.056 4.056 7 C -0.235 4.235 8 C 0.365 3.635 9 O -0.428 6.428 10 N -0.369 5.369 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.057 4.057 22 N -0.112 5.112 23 H 0.266 0.734 24 H 0.121 0.879 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.179 0.821 28 H 0.227 0.773 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -21.856 -8.402 -0.002 23.416 hybrid contribution 0.672 -0.451 0.000 0.809 sum -21.185 -8.852 -0.002 22.960 Atomic orbital electron populations 1.23287 0.75433 1.03819 1.02918 1.86535 1.24136 1.32772 1.84933 1.19799 0.86903 0.81778 0.73207 1.90926 1.65317 1.35777 1.46307 1.18863 0.86663 0.88048 1.23194 1.21164 0.90801 0.97623 0.95975 1.19892 0.94346 0.92308 1.16941 1.17344 0.82240 0.87270 0.76657 1.90762 1.86049 1.14919 1.51074 1.46151 1.05872 1.10688 1.74165 1.21729 0.84306 0.92995 1.00949 1.19321 0.89788 0.95570 0.97787 1.21031 0.90495 0.93181 1.51287 0.92250 1.24990 0.99158 0.95133 0.94999 1.69937 1.22303 1.10744 1.50462 0.86572 0.81548 0.80605 0.78812 1.20102 1.21290 1.20097 1.22690 0.87529 0.94974 1.00458 1.41688 1.05621 1.09161 1.54681 0.73388 0.87917 0.91611 0.91620 0.82072 0.77251 0.92442 0.92450 0.95947 0.95945 0.92821 0.79437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.30 16 2 O -0.37 -3.23 10.58 -40.98 -0.43 -3.66 16 3 C 0.54 6.14 7.93 34.12 0.27 6.41 16 4 O -0.50 -7.00 16.65 -19.34 -0.32 -7.32 16 5 C -0.06 -0.67 7.02 -82.43 -0.58 -1.24 16 6 C -0.03 -0.40 10.37 -39.08 -0.41 -0.81 16 7 C -0.23 -3.05 6.13 -105.02 -0.64 -3.70 16 8 C 0.58 10.14 7.81 -12.53 -0.10 10.04 16 9 O -0.55 -11.87 16.92 5.27 0.09 -11.78 16 10 N -0.72 -12.27 5.55 -61.39 -0.34 -12.61 16 11 C 0.12 2.58 5.61 -4.04 -0.02 2.55 16 12 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 17 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.09 0.79 11.43 -16.50 -0.19 0.60 16 22 N -0.52 -4.17 6.01 -9.32 -0.06 -4.22 16 23 H 0.43 2.02 8.96 -40.82 -0.37 1.66 16 24 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16 28 H 0.39 5.47 7.38 -40.82 -0.30 5.17 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.19 1.08 7.44 -52.48 -0.39 0.69 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -34.95 311.26 -5.79 -40.74 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -3.98 Total: 0.77 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.15 Total: 2.24 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.34 Total: -41.92 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.67 Total: -22.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.95 -5.79 -40.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346390446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.200 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds