Wall clock time and date at job start Mon Mar 30 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34878 * 117.00198 * 2 1 4 4 O 1.21603 * 119.99518 * 0.02562 * 3 2 1 5 5 C 1.46630 * 120.00306 * 179.97438 * 3 2 1 6 6 C 1.36445 * 125.86016 * 180.25375 * 5 3 2 7 7 C 1.41250 * 107.00577 * 180.13741 * 6 5 3 8 8 C 1.47398 * 126.45455 * 179.89843 * 7 6 5 9 9 O 1.21604 * 119.99857 * 359.70751 * 8 7 6 10 10 N 1.34779 * 119.99899 * 179.70999 * 8 7 6 11 11 C 1.46499 * 119.99872 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 C 1.38241 * 107.08929 * 359.62680 * 7 6 5 22 22 N 1.34234 * 108.41525 * 0.23439 * 21 7 6 23 23 H 0.96998 * 125.40012 * 179.97438 * 22 21 7 24 24 H 1.08998 * 109.46909 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47288 * 300.00021 * 1 2 3 26 26 H 1.08996 * 109.46934 * 60.00134 * 1 2 3 27 27 H 1.08003 * 126.49777 * 359.97438 * 6 5 3 28 28 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 29 29 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 30 30 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 31 31 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 33 33 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 34 34 H 1.08006 * 125.79447 * 180.26027 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2216 0.0005 5 6 3.5286 1.2785 0.0006 6 6 4.2689 2.4247 0.0055 7 6 5.6277 2.0388 0.0009 8 6 6.7941 2.9400 0.0016 9 8 6.6313 4.1451 0.0012 10 7 8.0410 2.4284 0.0027 11 6 9.2002 3.3242 0.0028 12 6 10.4857 2.4945 0.0034 13 6 11.6783 3.4160 0.0042 14 1 11.5337 4.4862 0.0038 15 6 12.9538 2.8925 0.0054 16 7 13.1299 1.5893 0.0063 17 14 14.4320 4.0347 0.0056 18 1 14.3948 4.8920 1.2177 19 1 15.6798 3.2294 0.0076 20 1 14.3965 4.8905 -1.2074 21 6 5.6576 0.6567 0.0018 22 7 4.3934 0.2053 0.0015 23 1 4.1301 -0.7283 0.0017 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8882 3.4353 0.0093 28 1 8.1708 1.4672 0.0033 29 1 9.1731 3.9535 0.8924 30 1 9.1741 3.9523 -0.8876 31 1 10.5121 1.8660 0.8936 32 1 10.5127 1.8655 -0.8863 33 1 14.0273 1.2210 0.0075 34 1 6.5470 0.0441 0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346390446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:07 Heat of formation + Delta-G solvation = -114.509083 kcal Electronic energy + Delta-G solvation = -18753.646881 eV Core-core repulsion = 15458.030188 eV Total energy + Delta-G solvation = -3295.616693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.70462 -41.09840 -40.05984 -37.59318 -36.52439 -34.78603 -32.72715 -31.72770 -30.82156 -28.54894 -26.83397 -24.44439 -24.02548 -22.67809 -21.47365 -20.86836 -20.06240 -18.49486 -18.18423 -17.55323 -17.36208 -16.86930 -16.42853 -16.42719 -16.25625 -15.45968 -14.85526 -14.71287 -14.60710 -14.41584 -14.20356 -14.13925 -13.50448 -13.17409 -13.07882 -12.89968 -12.51413 -12.18212 -11.95977 -11.89779 -11.64534 -11.44095 -10.96246 -10.56084 -10.34042 -9.96066 -9.55050 -8.20756 -6.29973 0.06122 0.70990 1.44455 1.46232 1.46816 1.54104 1.82930 1.97284 2.35514 2.51217 2.53023 3.14235 3.72723 3.80222 4.02313 4.15168 4.28511 4.32499 4.49832 4.56422 4.67763 4.73837 4.79967 4.92498 5.13669 5.26556 5.35309 5.46518 5.55329 5.65428 5.83887 6.21522 6.30184 6.54911 6.74614 6.82979 7.37635 7.38790 8.90669 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.062495 B = 0.002833 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.931485 B = 9879.546248 C =10301.728614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.542 3.458 4 O -0.531 6.531 5 C -0.058 4.058 6 C -0.052 4.052 7 C -0.261 4.261 8 C 0.580 3.420 9 O -0.600 6.600 10 N -0.709 5.709 11 C 0.141 3.859 12 C 0.024 3.976 13 C -0.548 4.548 14 H 0.056 0.944 15 C 0.009 3.991 16 N -0.924 5.924 17 Si 0.961 3.039 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.270 1.270 21 C 0.130 3.870 22 N -0.491 5.491 23 H 0.449 0.551 24 H 0.139 0.861 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.141 0.859 28 H 0.412 0.588 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.266 0.734 34 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.779 -11.452 -0.004 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.388 3.612 4 O -0.421 6.421 5 C -0.167 4.167 6 C -0.078 4.078 7 C -0.270 4.270 8 C 0.369 3.631 9 O -0.483 6.483 10 N -0.360 5.360 11 C 0.017 3.983 12 C -0.013 4.013 13 C -0.586 4.586 14 H 0.075 0.925 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.016 4.016 22 N -0.086 5.086 23 H 0.292 0.708 24 H 0.157 0.843 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.159 0.841 28 H 0.249 0.751 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -22.129 -10.625 -0.004 24.547 hybrid contribution 0.646 0.123 0.001 0.658 sum -21.483 -10.502 -0.003 23.912 Atomic orbital electron populations 1.23631 0.73665 1.06158 1.02801 1.86527 1.25771 1.30949 1.84194 1.19815 0.86906 0.82039 0.72400 1.90914 1.66052 1.37114 1.48001 1.18663 0.86956 0.88200 1.22909 1.21088 0.91507 0.97817 0.97350 1.19501 0.92543 0.93824 1.21128 1.17837 0.82947 0.87157 0.75133 1.90729 1.86734 1.17368 1.53427 1.45858 1.04811 1.11151 1.74160 1.21230 0.84574 0.92763 0.99751 1.19128 0.90432 0.95080 0.96689 1.21461 0.92025 0.93659 1.51467 0.92545 1.25806 1.01981 0.96660 0.94522 1.70027 1.23121 1.12213 1.51042 0.85560 0.78099 0.78728 0.79027 1.19520 1.20573 1.19509 1.23151 0.88887 0.93353 0.96181 1.41645 1.04731 1.09644 1.52610 0.70818 0.84311 0.91798 0.91807 0.84140 0.75130 0.93720 0.93728 0.96866 0.96860 0.92557 0.75139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 113.37 1.20 1.50 16 2 O -0.36 -5.48 10.58 -57.91 -0.61 -6.09 16 3 C 0.54 11.83 7.93 70.01 0.56 12.38 16 4 O -0.53 -15.12 16.65 19.50 0.32 -14.80 16 5 C -0.06 -1.23 7.02 39.97 0.28 -0.95 16 6 C -0.05 -1.40 10.37 22.59 0.23 -1.17 16 7 C -0.26 -6.83 6.13 -20.12 -0.12 -6.95 16 8 C 0.58 20.45 7.81 86.65 0.68 21.13 16 9 O -0.60 -26.98 16.92 -4.04 -0.07 -27.05 16 10 N -0.71 -23.81 5.55 -466.40 -2.59 -26.39 16 11 C 0.14 5.99 5.61 86.38 0.48 6.48 16 12 C 0.02 1.18 5.09 29.85 0.15 1.33 16 13 C -0.55 -30.23 9.11 25.60 0.23 -30.00 16 14 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 15 C 0.01 0.51 5.46 84.66 0.46 0.97 16 16 N -0.92 -53.01 13.29 21.45 0.28 -52.73 16 17 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 C 0.13 1.92 11.43 84.33 0.96 2.88 16 22 N -0.49 -6.20 6.01 -183.40 -1.10 -7.30 16 23 H 0.45 2.20 8.96 -92.71 -0.83 1.37 16 24 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 28 H 0.41 10.64 7.38 -92.71 -0.68 9.96 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.23 1.39 7.44 -2.91 -0.02 1.37 16 Total: -1.00 -77.76 311.26 3.01 -74.74 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -0.37 Total: 6.74 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 5.12 Total: 7.61 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -3.40 Total: -86.42 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -0.36 Total: -47.94 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -77.76 3.01 -74.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346390446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.765 kcal (2) G-P(sol) polarization free energy of solvation -77.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds