Wall clock time and date at job start Mon Mar 30 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35892 * 117.00494 * 2 1 4 4 C 1.38753 * 120.05630 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94621 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.97268 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47116 * 90.00017 * 6 5 4 8 8 C 1.46503 * 119.99675 * 269.99947 * 7 6 5 9 9 C 1.36932 * 120.00142 * 90.00182 * 7 6 5 10 10 H 1.07996 * 119.99811 * 22.36948 * 9 7 6 11 11 C 1.38818 * 119.99819 * 202.37324 * 9 7 6 12 12 N 1.31615 * 119.99938 * 11.33593 * 11 9 7 13 13 Si 1.86796 * 119.99829 * 191.33722 * 11 9 7 14 14 H 1.48506 * 109.47106 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47268 * 119.99892 * 13 11 9 16 16 H 1.48503 * 109.46807 * 240.00175 * 13 11 9 17 17 C 1.38283 * 120.05720 * 359.97438 * 5 4 3 18 18 C 1.38255 * 120.10870 * 0.02562 * 17 5 4 19 19 C 1.38163 * 120.05925 * 359.74487 * 18 17 5 20 20 N 1.47997 * 120.03033 * 180.25546 * 19 18 17 21 21 O 1.21798 * 120.00354 * 0.22887 * 20 19 18 22 22 O 1.21800 * 119.99687 * 180.23180 * 20 19 18 23 23 H 1.08993 * 109.47474 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46894 * 59.99702 * 1 2 3 25 25 H 1.09001 * 109.46638 * 300.00032 * 1 2 3 26 26 H 1.07996 * 120.02241 * 359.95788 * 4 3 2 27 27 H 1.08994 * 109.46858 * 209.99822 * 6 5 4 28 28 H 1.09002 * 109.46655 * 329.99780 * 6 5 4 29 29 H 1.08999 * 109.47123 * 94.20429 * 8 7 6 30 30 H 1.09004 * 109.47297 * 214.20293 * 8 7 6 31 31 H 1.09002 * 109.47420 * 334.20274 * 8 7 6 32 32 H 0.97003 * 120.00036 * 179.97438 * 12 11 9 33 33 H 1.07993 * 119.94820 * 180.02562 * 17 5 4 34 34 H 1.08006 * 119.96769 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9211 3.6047 0.0000 6 6 1.1023 4.8698 0.0000 7 7 0.8364 5.2794 1.3812 8 6 -0.3617 4.7948 2.0712 9 6 1.7077 6.1153 2.0273 10 1 2.3679 6.7521 1.4574 11 6 1.7423 6.1438 3.4147 12 7 1.1090 5.2215 4.1079 13 14 2.6876 7.4913 4.2978 14 1 3.3074 8.3979 3.2981 15 1 1.7580 8.2651 5.1592 16 1 3.7496 6.8817 5.1380 17 6 3.3021 3.6757 0.0016 18 6 4.0561 2.5168 0.0021 19 6 3.4312 1.2846 0.0064 20 7 4.2390 0.0445 0.0127 21 8 5.4552 0.1099 0.0183 22 8 3.6875 -1.0414 0.0122 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 0.5139 0.8900 26 1 0.2130 2.3203 -0.0016 27 1 1.6522 5.6585 -0.5134 28 1 0.1579 4.6913 -0.5143 29 1 -0.1141 3.9021 2.6455 30 1 -0.7315 5.5686 2.7440 31 1 -1.1308 4.5533 1.3376 32 1 1.1335 5.2412 5.0774 33 1 3.7925 4.6379 0.0024 34 1 5.1346 2.5749 0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352423528.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:32 Heat of formation + Delta-G solvation = 8.887012 kcal Electronic energy + Delta-G solvation = -20343.826505 eV Core-core repulsion = 17053.560668 eV Total energy + Delta-G solvation = -3290.265837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.66196 -39.94828 -37.77762 -35.96781 -35.70369 -32.57075 -30.83276 -30.18582 -27.60024 -27.28654 -26.17022 -24.53570 -22.26358 -22.06323 -20.77132 -19.01566 -18.17766 -17.23340 -17.07580 -17.03685 -15.92755 -15.69028 -15.15737 -14.47583 -14.35114 -13.94530 -13.84126 -13.36545 -12.74685 -12.54681 -11.90500 -11.80821 -11.33434 -11.29552 -11.16660 -11.04048 -11.00433 -10.88102 -10.62773 -10.60674 -10.50358 -10.27486 -10.18543 -8.99145 -8.88613 -8.29429 -7.17293 -6.10043 -3.47828 0.37545 1.45671 1.87107 1.98629 3.13392 3.19536 3.26926 3.28966 3.71284 4.23325 4.71339 4.84200 5.08177 5.15015 5.20989 5.23785 5.29259 5.32429 5.48620 5.52726 5.72530 5.92360 6.08356 6.27030 6.30299 6.43786 6.70440 6.80538 6.84880 7.06473 7.28167 7.40640 7.49037 8.00889 8.23043 8.84265 9.44499 9.91811 10.92837 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.005928 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.676085 B = 4722.403017 C = 5308.326028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.290 6.290 3 C 0.192 3.808 4 C -0.212 4.212 5 C 0.001 3.999 6 C 0.169 3.831 7 N -0.577 5.577 8 C 0.156 3.844 9 C -0.255 4.255 10 H 0.078 0.922 11 C 0.005 3.995 12 N -0.891 5.891 13 Si 0.912 3.088 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.286 1.286 17 C -0.137 4.137 18 C -0.027 4.027 19 C -0.106 4.106 20 N 0.049 4.951 21 O -0.204 6.204 22 O -0.163 6.163 23 H 0.104 0.896 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.140 0.860 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.003 0.997 32 H 0.259 0.741 33 H 0.141 0.859 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -3.843 -8.547 9.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.201 6.201 3 C 0.143 3.857 4 C -0.233 4.233 5 C -0.006 4.006 6 C 0.042 3.958 7 N -0.295 5.295 8 C 0.012 3.988 9 C -0.384 4.384 10 H 0.096 0.904 11 C -0.195 4.195 12 N -0.532 5.532 13 Si 0.741 3.259 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.157 4.157 18 C -0.047 4.047 19 C -0.193 4.193 20 N 0.560 4.440 21 O -0.409 6.409 22 O -0.379 6.379 23 H 0.122 0.878 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.159 0.841 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.728 -3.407 -8.294 9.372 hybrid contribution 0.567 0.253 0.900 1.093 sum -2.161 -3.154 -7.394 8.324 Atomic orbital electron populations 1.23196 0.77876 1.04343 1.01861 1.86334 1.21777 1.25143 1.86852 1.18601 0.89312 0.86011 0.91816 1.21027 1.00224 0.90588 1.11432 1.21469 0.94805 0.97086 0.87209 1.20284 0.96244 0.90462 0.88817 1.44477 1.22841 1.51224 1.10943 1.20961 0.84967 0.99503 0.93362 1.19443 1.17221 1.12591 0.89169 0.90421 1.25221 0.99166 0.98154 0.97000 1.70068 1.44170 1.32611 1.06372 0.86063 0.79274 0.80896 0.79667 1.19854 1.21180 1.21299 1.20925 0.93385 0.97594 1.03800 1.20798 1.01369 0.89152 0.93352 1.20260 0.87847 0.85065 1.26113 1.43342 1.00959 1.02611 0.97070 1.94464 0.96270 1.94092 1.56070 1.94518 1.74357 1.15510 1.53528 0.87754 0.92330 0.91988 0.84231 0.91603 0.92476 0.95008 0.92788 0.97849 0.93085 0.84111 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.29 -4.74 8.51 -41.52 -0.35 -5.09 16 3 C 0.19 3.35 6.67 -39.21 -0.26 3.09 16 4 C -0.21 -3.48 8.69 -39.43 -0.34 -3.82 16 5 C 0.00 0.02 5.46 -104.65 -0.57 -0.55 16 6 C 0.17 2.95 5.83 -5.19 -0.03 2.92 16 7 N -0.58 -12.74 2.91 -182.50 -0.53 -13.27 16 8 C 0.16 3.42 9.01 59.85 0.54 3.96 16 9 C -0.26 -6.23 9.67 -15.06 -0.15 -6.37 16 10 H 0.08 1.83 7.84 -52.49 -0.41 1.41 16 11 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 12 N -0.89 -23.98 10.59 55.49 0.59 -23.39 16 13 Si 0.91 20.20 29.57 -169.99 -5.03 15.17 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.14 -2.30 9.70 -39.56 -0.38 -2.69 16 18 C -0.03 -0.46 9.55 -39.60 -0.38 -0.83 16 19 C -0.11 -1.96 6.87 -79.81 -0.55 -2.51 16 20 N 0.05 0.97 4.45 34.03 0.15 1.13 16 21 O -0.20 -4.02 18.45 -29.46 -0.54 -4.56 16 22 O -0.16 -3.30 17.24 -36.49 -0.63 -3.93 16 23 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 25 H 0.06 0.69 7.66 -51.93 -0.40 0.30 16 26 H 0.14 1.99 6.30 -52.49 -0.33 1.65 16 27 H 0.07 1.07 7.97 -51.93 -0.41 0.66 16 28 H 0.06 0.87 7.81 -51.93 -0.41 0.46 16 29 H 0.03 0.77 7.42 -51.93 -0.39 0.38 16 30 H 0.05 1.28 7.19 -51.93 -0.37 0.91 16 31 H 0.00 0.06 7.84 -51.93 -0.41 -0.35 16 32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.15 2.21 7.61 -52.48 -0.40 1.81 16 LS Contribution 299.25 15.07 4.51 4.51 Total: -1.00 -29.43 299.25 -6.96 -36.39 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.90 Total: -1.43 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.22 Total: -5.52 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.21 Total: -35.53 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -1.53 Total: -13.58 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.43 -6.96 -36.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352423528.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.276 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds