Wall clock time and date at job start Mon Mar 30 2020 04:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35892 * 117.00494 * 2 1 4 4 C 1.38753 * 120.05630 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94621 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.97268 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47116 * 90.00017 * 6 5 4 8 8 C 1.46503 * 119.99675 * 269.99947 * 7 6 5 9 9 C 1.36932 * 120.00142 * 90.00182 * 7 6 5 10 10 H 1.07996 * 119.99811 * 22.36948 * 9 7 6 11 11 C 1.38818 * 119.99819 * 202.37324 * 9 7 6 12 12 N 1.31615 * 119.99938 * 11.33593 * 11 9 7 13 13 Si 1.86796 * 119.99829 * 191.33722 * 11 9 7 14 14 H 1.48506 * 109.47106 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47268 * 119.99892 * 13 11 9 16 16 H 1.48503 * 109.46807 * 240.00175 * 13 11 9 17 17 C 1.38283 * 120.05720 * 359.97438 * 5 4 3 18 18 C 1.38255 * 120.10870 * 0.02562 * 17 5 4 19 19 C 1.38163 * 120.05925 * 359.74487 * 18 17 5 20 20 N 1.47997 * 120.03033 * 180.25546 * 19 18 17 21 21 O 1.21798 * 120.00354 * 0.22887 * 20 19 18 22 22 O 1.21800 * 119.99687 * 180.23180 * 20 19 18 23 23 H 1.08993 * 109.47474 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46894 * 59.99702 * 1 2 3 25 25 H 1.09001 * 109.46638 * 300.00032 * 1 2 3 26 26 H 1.07996 * 120.02241 * 359.95788 * 4 3 2 27 27 H 1.08994 * 109.46858 * 209.99822 * 6 5 4 28 28 H 1.09002 * 109.46655 * 329.99780 * 6 5 4 29 29 H 1.08999 * 109.47123 * 94.20429 * 8 7 6 30 30 H 1.09004 * 109.47297 * 214.20293 * 8 7 6 31 31 H 1.09002 * 109.47420 * 334.20274 * 8 7 6 32 32 H 0.97003 * 120.00036 * 179.97438 * 12 11 9 33 33 H 1.07993 * 119.94820 * 180.02562 * 17 5 4 34 34 H 1.08006 * 119.96769 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9211 3.6047 0.0000 6 6 1.1023 4.8698 0.0000 7 7 0.8364 5.2794 1.3812 8 6 -0.3617 4.7948 2.0712 9 6 1.7077 6.1153 2.0273 10 1 2.3679 6.7521 1.4574 11 6 1.7423 6.1438 3.4147 12 7 1.1090 5.2215 4.1079 13 14 2.6876 7.4913 4.2978 14 1 3.3074 8.3979 3.2981 15 1 1.7580 8.2651 5.1592 16 1 3.7496 6.8817 5.1380 17 6 3.3021 3.6757 0.0016 18 6 4.0561 2.5168 0.0021 19 6 3.4312 1.2846 0.0064 20 7 4.2390 0.0445 0.0127 21 8 5.4552 0.1099 0.0183 22 8 3.6875 -1.0414 0.0122 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 0.5139 0.8900 26 1 0.2130 2.3203 -0.0016 27 1 1.6522 5.6585 -0.5134 28 1 0.1579 4.6913 -0.5143 29 1 -0.1141 3.9021 2.6455 30 1 -0.7315 5.5686 2.7440 31 1 -1.1308 4.5533 1.3376 32 1 1.1335 5.2412 5.0774 33 1 3.7925 4.6379 0.0024 34 1 5.1346 2.5749 0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352423528.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:31 Heat of formation + Delta-G solvation = -6.721131 kcal Electronic energy + Delta-G solvation = -20344.503325 eV Core-core repulsion = 17053.560668 eV Total energy + Delta-G solvation = -3290.942657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.17780 -41.28536 -39.10032 -37.52977 -37.27140 -34.14144 -32.45034 -31.50293 -28.94722 -28.49728 -27.90310 -26.05992 -23.66630 -23.54962 -22.24328 -20.45791 -19.71450 -18.80046 -18.57996 -18.50320 -17.27660 -16.90144 -16.77831 -15.86072 -15.62163 -15.55462 -15.28432 -14.85442 -14.25560 -13.82512 -13.35956 -13.06458 -12.87712 -12.85003 -12.61879 -12.59737 -12.55187 -12.24714 -12.19509 -12.07528 -12.05854 -11.93253 -11.84549 -10.71445 -10.38867 -9.61001 -8.91443 -7.90675 -5.35758 -1.07694 0.11715 0.40322 0.50638 1.45114 1.48601 1.56538 1.97204 2.32208 2.50438 3.27562 3.39579 3.58260 3.75735 3.90342 3.93370 4.17148 4.27310 4.32290 4.42445 4.59491 4.69026 4.77134 4.81949 4.92886 4.96154 5.28678 5.31685 5.43667 5.46812 5.61351 5.70848 6.02769 6.25383 6.66147 7.07324 7.76664 8.18258 9.11863 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.005928 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.676085 B = 4722.403017 C = 5308.326028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.307 6.307 3 C 0.189 3.811 4 C -0.206 4.206 5 C 0.002 3.998 6 C 0.169 3.831 7 N -0.598 5.598 8 C 0.171 3.829 9 C -0.256 4.256 10 H 0.084 0.916 11 C -0.049 4.049 12 N -0.933 5.933 13 Si 0.963 3.037 14 H -0.259 1.259 15 H -0.293 1.293 16 H -0.300 1.300 17 C -0.141 4.141 18 C -0.026 4.026 19 C -0.121 4.121 20 N 0.047 4.953 21 O -0.204 6.204 22 O -0.178 6.178 23 H 0.129 0.871 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.165 0.835 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.001 0.999 30 H 0.022 0.978 31 H 0.041 0.959 32 H 0.247 0.753 33 H 0.156 0.844 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -3.956 -10.538 11.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.219 6.219 3 C 0.139 3.861 4 C -0.226 4.226 5 C -0.003 4.003 6 C 0.043 3.957 7 N -0.318 5.318 8 C 0.026 3.974 9 C -0.386 4.386 10 H 0.102 0.898 11 C -0.245 4.245 12 N -0.579 5.579 13 Si 0.792 3.208 14 H -0.183 1.183 15 H -0.220 1.220 16 H -0.227 1.227 17 C -0.160 4.160 18 C -0.046 4.046 19 C -0.208 4.208 20 N 0.556 4.444 21 O -0.410 6.410 22 O -0.392 6.392 23 H 0.147 0.853 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.182 0.818 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.019 0.981 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.173 0.827 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.953 -3.557 -10.355 11.340 hybrid contribution 0.650 0.075 1.224 1.388 sum -2.303 -3.481 -9.131 10.040 Atomic orbital electron populations 1.23584 0.75201 1.06531 1.02948 1.86332 1.24546 1.24662 1.86322 1.18783 0.89187 0.86944 0.91180 1.21319 1.01509 0.89829 1.09915 1.21626 0.95131 0.97420 0.86089 1.20420 0.97967 0.90744 0.86538 1.44392 1.22970 1.52778 1.11693 1.20670 0.86031 0.97036 0.93618 1.19676 1.16325 1.13343 0.89233 0.89823 1.25799 1.00785 0.99918 0.98002 1.70223 1.47352 1.34751 1.05525 0.85261 0.77722 0.79177 0.78671 1.18313 1.22040 1.22725 1.21186 0.93495 0.98195 1.03150 1.21041 1.02426 0.88567 0.92518 1.20654 0.88572 0.84927 1.26622 1.43558 1.01051 1.03001 0.96763 1.94449 0.96573 1.94192 1.55809 1.94511 1.74357 1.16065 1.54219 0.85260 0.90076 0.91893 0.81759 0.90155 0.89517 0.98073 0.95956 0.94074 0.94345 0.82666 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.31 -9.35 8.51 -71.18 -0.61 -9.96 16 3 C 0.19 6.16 6.67 22.51 0.15 6.31 16 4 C -0.21 -6.10 8.69 22.37 0.19 -5.91 16 5 C 0.00 0.08 5.46 -19.88 -0.11 -0.03 16 6 C 0.17 5.34 5.83 85.63 0.50 5.84 16 7 N -0.60 -25.46 2.91 -731.30 -2.13 -27.59 16 8 C 0.17 7.37 9.01 127.77 1.15 8.52 16 9 C -0.26 -12.28 9.67 84.04 0.81 -11.47 16 10 H 0.08 3.80 7.84 -2.91 -0.02 3.78 16 11 C -0.05 -2.54 5.13 84.86 0.44 -2.10 16 12 N -0.93 -51.82 10.59 21.65 0.23 -51.59 16 13 Si 0.96 42.17 29.57 68.60 2.03 44.20 16 14 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 15 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 17 C -0.14 -4.35 9.70 22.28 0.22 -4.14 16 18 C -0.03 -0.83 9.55 22.26 0.21 -0.62 16 19 C -0.12 -4.27 6.87 36.48 0.25 -4.02 16 20 N 0.05 1.79 4.45 -46.24 -0.21 1.59 16 21 O -0.20 -7.75 18.45 18.89 0.35 -7.40 16 22 O -0.18 -7.03 17.24 25.61 0.44 -6.59 16 23 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.08 1.22 7.66 -2.39 -0.02 1.20 16 25 H 0.06 1.23 7.66 -2.39 -0.02 1.22 16 26 H 0.17 4.01 6.30 -2.91 -0.02 3.99 16 27 H 0.08 2.32 7.97 -2.39 -0.02 2.30 16 28 H 0.09 2.23 7.81 -2.39 -0.02 2.21 16 29 H 0.00 0.04 7.42 -2.39 -0.02 0.03 16 30 H 0.02 1.06 7.19 -2.38 -0.02 1.04 16 31 H 0.04 1.40 7.84 -2.39 -0.02 1.38 16 32 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 33 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.17 4.54 7.61 -2.91 -0.02 4.52 16 Total: -1.00 -64.11 299.25 6.15 -57.96 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.12 Total: 5.68 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 4.93 Total: -6.30 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -2.10 Total: -77.59 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.18 Total: -23.94 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -64.11 6.15 -57.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352423528.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.238 kcal (2) G-P(sol) polarization free energy of solvation -64.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds