Wall clock time and date at job start Mon Mar 30 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99898 * 2 1 4 4 C 1.53002 * 109.46908 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.46872 * 65.00099 * 4 3 2 6 6 C 1.35696 * 117.00117 * 179.97438 * 5 4 3 7 7 N 1.32150 * 119.74362 * 0.29574 * 6 5 4 8 8 C 1.31987 * 121.73098 * 180.29174 * 7 6 5 9 9 C 1.38194 * 121.02102 * 359.67480 * 8 7 6 10 10 C 1.38633 * 119.37722 * 0.02737 * 9 8 7 11 11 C 1.39175 * 118.40842 * 359.97438 * 10 9 8 12 12 N 1.39579 * 120.52458 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00007 * 325.78884 * 12 11 10 14 14 O 1.21768 * 119.99912 * 3.97624 * 13 12 11 15 15 C 1.41810 * 120.00033 * 183.98134 * 13 12 11 16 16 H 1.07995 * 120.00032 * 359.97438 * 15 13 12 17 17 C 1.40140 * 119.99954 * 179.97438 * 15 13 12 18 18 N 1.30624 * 120.00213 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99846 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46971 * 59.99844 * 19 17 15 21 21 H 1.48497 * 109.46936 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47227 * 300.00278 * 19 17 15 23 23 H 1.08997 * 109.47211 * 59.99765 * 1 2 3 24 24 H 1.09000 * 109.47387 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46831 * 299.99572 * 1 2 3 26 26 H 1.09003 * 109.47070 * 60.00982 * 3 2 1 27 27 H 1.08987 * 109.47793 * 299.99939 * 3 2 1 28 28 H 1.08996 * 109.47580 * 305.00629 * 4 3 2 29 29 H 1.09000 * 109.47656 * 184.99864 * 4 3 2 30 30 H 1.07997 * 119.49254 * 179.70654 * 8 7 6 31 31 H 1.07998 * 120.31337 * 180.02562 * 9 8 7 32 32 H 1.07997 * 120.79284 * 180.02562 * 10 9 8 33 33 H 0.97001 * 119.99722 * 145.50330 * 12 11 10 34 34 H 0.96998 * 120.00076 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3010 0.3984 -1.3811 7 7 6.1332 0.7734 -0.4255 8 6 7.4390 0.6214 -0.5430 9 6 7.9908 0.0537 -1.6757 10 6 7.1578 -0.3612 -2.7033 11 6 5.7849 -0.1890 -2.5532 12 7 4.9058 -0.5903 -3.5604 13 6 5.2727 -0.4924 -4.8535 14 8 6.3965 -0.1223 -5.1412 15 6 4.3498 -0.8202 -5.8791 16 1 3.3532 -1.1487 -5.6239 17 6 4.7311 -0.7178 -7.2237 18 7 5.9364 -0.3200 -7.5324 19 14 3.5156 -1.1503 -8.5747 20 1 2.3256 -0.2679 -8.4710 21 1 4.1591 -0.9591 -9.8993 22 1 3.0955 -2.5671 -8.4277 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6887 1.8463 0.8901 27 1 1.6887 1.8464 -0.8898 28 1 3.8508 0.5684 0.8426 29 1 3.9786 2.1764 0.0902 30 1 8.0863 0.9451 0.2586 31 1 9.0609 -0.0656 -1.7597 32 1 7.5645 -0.8080 -3.5984 33 1 4.0325 -0.9436 -3.3294 34 1 6.2001 -0.2488 -8.4631 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356286550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:01 Heat of formation + Delta-G solvation = -80.937371 kcal Electronic energy + Delta-G solvation = -19838.950430 eV Core-core repulsion = 16544.789516 eV Total energy + Delta-G solvation = -3294.160914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17911 -38.29282 -37.52656 -36.89370 -33.75006 -32.43219 -31.25314 -30.44751 -28.70459 -26.46885 -26.33328 -23.69826 -22.49449 -21.89983 -19.94809 -18.12690 -17.69517 -16.81359 -16.32025 -15.90791 -15.69385 -15.43826 -15.14703 -14.87627 -14.37886 -14.00167 -13.26435 -13.14199 -12.70350 -12.54158 -12.48538 -12.27008 -11.73389 -11.53086 -11.35891 -11.21175 -11.08205 -10.67166 -10.62161 -10.37187 -9.80953 -9.73943 -9.23838 -8.95247 -8.53035 -7.68721 -6.96195 -6.36717 -4.88761 1.79269 1.96722 3.08107 3.13151 3.15339 3.38699 3.70365 3.98618 4.27768 4.49613 4.60142 4.92757 4.96940 5.14778 5.21935 5.28090 5.32403 5.52207 5.53847 5.60050 5.64022 5.76370 5.83666 5.98453 6.09536 6.64524 6.81278 7.05922 7.12802 7.25447 7.64457 7.87588 8.03857 8.16619 8.41584 8.81191 9.30217 10.38614 10.58541 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.006176 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.947998 B = 4532.768718 C = 6282.639725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.061 3.939 4 C 0.078 3.922 5 O -0.298 6.298 6 C 0.265 3.735 7 N -0.527 5.527 8 C 0.077 3.923 9 C -0.184 4.184 10 C -0.068 4.068 11 C 0.138 3.862 12 N -0.688 5.688 13 C 0.545 3.455 14 O -0.571 6.571 15 C -0.535 4.535 16 H 0.071 0.929 17 C 0.089 3.911 18 N -0.749 5.749 19 Si 0.913 3.087 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.265 1.265 23 H 0.043 0.957 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.159 0.841 33 H 0.398 0.602 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 1.656 12.558 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.016 4.016 4 C 0.002 3.998 5 O -0.206 6.206 6 C 0.082 3.918 7 N -0.251 5.251 8 C -0.078 4.078 9 C -0.205 4.205 10 C -0.097 4.097 11 C 0.035 3.965 12 N -0.331 5.331 13 C 0.354 3.646 14 O -0.455 6.455 15 C -0.570 4.570 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.376 5.376 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.190 1.190 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.165 0.835 31 H 0.147 0.853 32 H 0.176 0.824 33 H 0.232 0.768 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.377 2.100 12.667 13.920 hybrid contribution -0.850 -0.298 -1.031 1.369 sum -6.227 1.802 11.636 13.320 Atomic orbital electron populations 1.22742 0.81181 1.02828 0.99790 1.87984 1.19535 1.27315 1.95366 1.22650 0.92267 0.85570 1.01067 1.22486 0.92012 0.98683 0.86644 1.86253 1.18050 1.77148 1.39112 1.19729 0.83947 0.96141 0.91964 1.67089 1.05647 1.22500 1.29893 1.21993 0.89370 0.99046 0.97427 1.21861 1.00757 1.03072 0.94838 1.21803 0.90981 0.97685 0.99221 1.17994 0.91621 0.98394 0.88444 1.43978 1.17847 1.65798 1.05515 1.17079 0.88753 0.79139 0.79596 1.90613 1.21972 1.51958 1.80979 1.20016 0.99798 1.46778 0.90458 0.91109 1.25756 0.95315 0.92748 0.99619 1.69994 1.17491 1.30887 1.19221 0.86335 0.80806 0.79875 0.79267 1.19060 1.20345 1.18999 0.93885 0.89612 0.94367 0.91486 0.92125 0.91228 0.90516 0.83461 0.85305 0.82366 0.76840 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.34 10.67 -40.09 -0.43 -5.77 16 3 C 0.06 0.74 6.32 37.16 0.23 0.98 16 4 C 0.08 1.13 5.69 37.16 0.21 1.34 16 5 O -0.30 -5.63 9.66 -23.65 -0.23 -5.86 16 6 C 0.26 5.38 7.52 -16.85 -0.13 5.25 16 7 N -0.53 -9.70 9.21 -13.09 -0.12 -9.82 16 8 C 0.08 1.27 11.17 -17.50 -0.20 1.07 16 9 C -0.18 -3.20 10.10 -39.45 -0.40 -3.60 16 10 C -0.07 -1.47 8.80 -39.09 -0.34 -1.82 16 11 C 0.14 3.09 6.35 -83.42 -0.53 2.56 16 12 N -0.69 -16.49 5.17 -12.20 -0.06 -16.55 16 13 C 0.54 15.37 7.43 -14.90 -0.11 15.26 16 14 O -0.57 -17.73 12.32 5.13 0.06 -17.66 16 15 C -0.54 -14.79 9.31 -37.50 -0.35 -15.14 16 16 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 17 C 0.09 2.39 5.50 -17.35 -0.10 2.29 16 18 N -0.75 -21.55 11.73 55.55 0.65 -20.90 16 19 Si 0.91 19.48 29.56 -169.99 -5.02 14.45 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.73 8.14 -51.94 -0.42 0.31 16 28 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 29 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 30 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.16 3.77 6.28 -52.49 -0.33 3.44 16 33 H 0.40 8.72 8.54 -40.82 -0.35 8.37 16 34 H 0.27 7.10 8.29 -40.82 -0.34 6.77 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -33.68 302.84 -5.20 -38.88 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.03 Total: 9.04 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -0.59 Total: 9.63 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.47 Total: -47.27 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.59 Total: -29.30 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.68 -5.20 -38.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356286550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.053 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds