Wall clock time and date at job start Mon Mar 30 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99898 * 2 1 4 4 C 1.53002 * 109.46908 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.46872 * 65.00099 * 4 3 2 6 6 C 1.35696 * 117.00117 * 179.97438 * 5 4 3 7 7 N 1.32150 * 119.74362 * 0.29574 * 6 5 4 8 8 C 1.31987 * 121.73098 * 180.29174 * 7 6 5 9 9 C 1.38194 * 121.02102 * 359.67480 * 8 7 6 10 10 C 1.38633 * 119.37722 * 0.02737 * 9 8 7 11 11 C 1.39175 * 118.40842 * 359.97438 * 10 9 8 12 12 N 1.39579 * 120.52458 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00007 * 325.78884 * 12 11 10 14 14 O 1.21768 * 119.99912 * 3.97624 * 13 12 11 15 15 C 1.41810 * 120.00033 * 183.98134 * 13 12 11 16 16 H 1.07995 * 120.00032 * 359.97438 * 15 13 12 17 17 C 1.40140 * 119.99954 * 179.97438 * 15 13 12 18 18 N 1.30624 * 120.00213 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99846 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46971 * 59.99844 * 19 17 15 21 21 H 1.48497 * 109.46936 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47227 * 300.00278 * 19 17 15 23 23 H 1.08997 * 109.47211 * 59.99765 * 1 2 3 24 24 H 1.09000 * 109.47387 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46831 * 299.99572 * 1 2 3 26 26 H 1.09003 * 109.47070 * 60.00982 * 3 2 1 27 27 H 1.08987 * 109.47793 * 299.99939 * 3 2 1 28 28 H 1.08996 * 109.47580 * 305.00629 * 4 3 2 29 29 H 1.09000 * 109.47656 * 184.99864 * 4 3 2 30 30 H 1.07997 * 119.49254 * 179.70654 * 8 7 6 31 31 H 1.07998 * 120.31337 * 180.02562 * 9 8 7 32 32 H 1.07997 * 120.79284 * 180.02562 * 10 9 8 33 33 H 0.97001 * 119.99722 * 145.50330 * 12 11 10 34 34 H 0.96998 * 120.00076 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3010 0.3984 -1.3811 7 7 6.1332 0.7734 -0.4255 8 6 7.4390 0.6214 -0.5430 9 6 7.9908 0.0537 -1.6757 10 6 7.1578 -0.3612 -2.7033 11 6 5.7849 -0.1890 -2.5532 12 7 4.9058 -0.5903 -3.5604 13 6 5.2727 -0.4924 -4.8535 14 8 6.3965 -0.1223 -5.1412 15 6 4.3498 -0.8202 -5.8791 16 1 3.3532 -1.1487 -5.6239 17 6 4.7311 -0.7178 -7.2237 18 7 5.9364 -0.3200 -7.5324 19 14 3.5156 -1.1503 -8.5747 20 1 2.3256 -0.2679 -8.4710 21 1 4.1591 -0.9591 -9.8993 22 1 3.0955 -2.5671 -8.4277 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6887 1.8463 0.8901 27 1 1.6887 1.8464 -0.8898 28 1 3.8508 0.5684 0.8426 29 1 3.9786 2.1764 0.0902 30 1 8.0863 0.9451 0.2586 31 1 9.0609 -0.0656 -1.7597 32 1 7.5645 -0.8080 -3.5984 33 1 4.0325 -0.9436 -3.3294 34 1 6.2001 -0.2488 -8.4631 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356286550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:01 Heat of formation + Delta-G solvation = -107.837979 kcal Electronic energy + Delta-G solvation = -19840.116928 eV Core-core repulsion = 16544.789516 eV Total energy + Delta-G solvation = -3295.327412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71357 -39.76849 -39.09015 -38.18119 -35.63613 -34.51525 -32.69838 -31.76408 -30.26468 -28.40074 -27.22435 -25.09375 -24.06418 -23.18394 -21.84681 -19.75411 -19.36428 -18.02813 -17.83302 -17.72493 -17.13466 -16.71029 -16.41490 -16.07808 -15.83577 -15.66034 -14.88448 -14.67595 -14.38019 -14.20481 -14.00418 -13.32206 -13.24162 -13.09178 -12.78545 -12.71773 -12.48229 -12.34761 -12.06893 -11.85495 -11.51322 -10.95664 -10.79950 -10.63679 -10.18243 -9.75441 -8.68139 -8.39561 -7.03205 0.28852 0.39089 1.38700 1.41197 1.54082 2.04901 2.20264 2.35229 2.81477 2.83552 2.93834 3.54595 3.60068 3.94173 4.08062 4.16752 4.22354 4.32576 4.45452 4.50793 4.55213 4.57397 4.63760 4.76163 4.87141 5.13465 5.21100 5.32382 5.58060 5.85879 6.06080 6.09911 6.21098 6.46154 6.72006 6.91846 7.33230 8.34912 8.53824 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.006176 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.947998 B = 4532.768718 C = 6282.639725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.063 3.937 4 C 0.071 3.929 5 O -0.315 6.315 6 C 0.267 3.733 7 N -0.526 5.526 8 C 0.098 3.902 9 C -0.179 4.179 10 C -0.085 4.085 11 C 0.092 3.908 12 N -0.685 5.685 13 C 0.531 3.469 14 O -0.612 6.612 15 C -0.565 4.565 16 H 0.086 0.914 17 C 0.034 3.966 18 N -0.799 5.799 19 Si 1.001 2.999 20 H -0.255 1.255 21 H -0.269 1.269 22 H -0.253 1.253 23 H 0.045 0.955 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.201 0.799 31 H 0.165 0.835 32 H 0.125 0.875 33 H 0.403 0.597 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.775 2.158 13.970 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.013 4.013 4 C -0.004 4.004 5 O -0.223 6.223 6 C 0.085 3.915 7 N -0.250 5.250 8 C -0.058 4.058 9 C -0.199 4.199 10 C -0.114 4.114 11 C -0.008 4.008 12 N -0.329 5.329 13 C 0.341 3.659 14 O -0.500 6.500 15 C -0.600 4.600 16 H 0.104 0.896 17 C -0.184 4.184 18 N -0.427 5.427 19 Si 0.819 3.181 20 H -0.179 1.179 21 H -0.193 1.193 22 H -0.177 1.177 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.217 0.783 31 H 0.182 0.818 32 H 0.142 0.858 33 H 0.238 0.762 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.374 2.605 14.147 15.734 hybrid contribution -0.477 -0.412 -1.260 1.409 sum -6.851 2.193 12.887 14.759 Atomic orbital electron populations 1.22930 0.79286 1.03780 1.01032 1.87930 1.21734 1.28379 1.95652 1.22742 0.90484 0.85361 1.02693 1.22822 0.93813 0.98813 0.84934 1.86238 1.17356 1.77383 1.41358 1.19688 0.84905 0.95518 0.91389 1.67279 1.06403 1.22361 1.28949 1.22879 0.89126 0.95997 0.97808 1.22200 1.02083 1.01911 0.93748 1.21711 0.91540 0.98653 0.99500 1.18255 0.91923 1.01207 0.89448 1.43528 1.18340 1.66165 1.04885 1.17414 0.88450 0.78894 0.81130 1.90567 1.23387 1.53844 1.82181 1.20528 1.00513 1.47480 0.91454 0.89568 1.26993 0.97426 0.91719 1.02273 1.70135 1.20116 1.32050 1.20366 0.85025 0.77718 0.80108 0.75226 1.17916 1.19325 1.17683 0.93676 0.88951 0.92018 0.87731 0.92421 0.91183 0.89430 0.78257 0.81791 0.85759 0.76233 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -11.17 10.67 -144.34 -1.54 -12.71 16 3 C 0.06 1.44 6.32 71.98 0.45 1.89 16 4 C 0.07 1.98 5.69 71.98 0.41 2.39 16 5 O -0.32 -11.95 9.66 -85.51 -0.83 -12.77 16 6 C 0.27 10.83 7.52 85.01 0.64 11.46 16 7 N -0.53 -18.29 9.21 -308.24 -2.84 -21.13 16 8 C 0.10 2.89 11.17 84.66 0.95 3.83 16 9 C -0.18 -5.93 10.10 22.35 0.23 -5.70 16 10 C -0.09 -3.80 8.80 22.59 0.20 -3.60 16 11 C 0.09 4.28 6.35 38.50 0.24 4.52 16 12 N -0.68 -34.52 5.17 -310.70 -1.61 -36.13 16 13 C 0.53 31.54 7.43 85.13 0.63 32.17 16 14 O -0.61 -40.26 12.32 -4.57 -0.06 -40.31 16 15 C -0.56 -32.21 9.31 23.62 0.22 -31.99 16 16 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 17 C 0.03 1.88 5.50 85.33 0.47 2.35 16 18 N -0.80 -47.57 11.73 21.85 0.26 -47.31 16 19 Si 1.00 40.06 29.56 68.60 2.03 42.09 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 23 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.93 8.10 -2.39 -0.02 1.91 16 29 H 0.09 2.21 8.11 -2.39 -0.02 2.19 16 30 H 0.20 3.84 8.06 -2.91 -0.02 3.81 16 31 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.12 6.36 6.28 -2.91 -0.02 6.34 16 33 H 0.40 18.59 8.54 -92.71 -0.79 17.80 16 34 H 0.28 15.00 8.29 -92.71 -0.77 14.23 16 Total: -1.00 -77.23 302.84 1.44 -75.79 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.34 Total: 33.44 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.69 Total: 19.05 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -4.19 Total: -104.57 kcal Atomic # 8 Polarization: -63.37 SS G_CDS: -2.42 Total: -65.80 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -77.23 1.44 -75.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356286550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.050 kcal (2) G-P(sol) polarization free energy of solvation -77.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds