Wall clock time and date at job start Mon Mar 30 2020 04:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99439 * 2 1 4 4 H 1.48503 * 109.47399 * 240.00009 * 3 2 1 5 5 H 1.48498 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46848 * 120.00110 * 3 2 1 7 7 C 1.40045 * 120.00636 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00442 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99484 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00564 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99968 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00447 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47294 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.46995 * 180.02562 * 14 13 12 16 16 C 1.39843 * 120.00020 * 180.02562 * 15 14 13 17 17 C 1.38843 * 120.07818 * 0.02562 * 16 15 14 18 18 C 1.38152 * 119.94733 * 180.02562 * 17 16 15 19 19 C 1.38269 * 120.11481 * 0.02562 * 18 17 16 20 20 C 1.38291 * 120.16146 * 0.02562 * 19 18 17 21 21 C 1.38281 * 120.04734 * 359.67259 * 20 19 18 22 22 F 1.35106 * 120.05874 * 180.32389 * 21 20 19 23 23 H 0.96999 * 120.00506 * 359.97438 * 1 2 3 24 24 H 0.97006 * 119.99798 * 0.02562 * 11 9 7 25 25 H 1.09001 * 109.47054 * 59.99647 * 12 11 9 26 26 H 1.09004 * 109.47074 * 300.00161 * 12 11 9 27 27 H 1.09001 * 109.46832 * 60.00150 * 13 12 11 28 28 H 1.08993 * 109.47194 * 299.99671 * 13 12 11 29 29 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 30 30 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 31 31 H 0.96998 * 120.00192 * 359.97438 * 15 14 13 32 32 H 1.07994 * 120.01954 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.94093 * 179.97438 * 18 17 16 34 34 H 1.07994 * 119.92282 * 180.02562 * 19 18 17 35 35 H 1.07997 * 119.97982 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6966 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0071 -1.2127 -0.0005 8 1 3.0871 -1.2127 -0.0010 9 6 1.2753 -2.4804 -0.0005 10 8 0.0584 -2.4806 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2168 -4.9164 0.0000 13 6 2.2112 -6.0792 -0.0007 14 6 1.4462 -7.4043 0.0005 15 7 2.3983 -8.5177 0.0004 16 6 1.9323 -9.8362 0.0008 17 6 0.5676 -10.0919 0.0009 18 6 0.1102 -11.3955 0.0019 19 6 1.0091 -12.4462 0.0034 20 6 2.3694 -12.1968 0.0044 21 6 2.8346 -10.8946 -0.0029 22 9 4.1634 -10.6507 -0.0085 23 1 -0.4851 0.8400 0.0004 24 1 2.9193 -3.6476 -0.0002 25 1 0.5898 -4.9744 -0.8897 26 1 0.5905 -4.9740 0.8903 27 1 2.8385 -6.0214 0.8888 28 1 2.8370 -6.0215 -0.8912 29 1 0.8205 -7.4618 0.8912 30 1 0.8186 -7.4624 -0.8888 31 1 3.3519 -8.3404 -0.0008 32 1 -0.1356 -9.2724 0.0010 33 1 -0.9514 -11.5943 0.0024 34 1 0.6482 -13.4640 0.0038 35 1 3.0689 -13.0196 0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357747989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:16 Heat of formation + Delta-G solvation = -68.814513 kcal Electronic energy + Delta-G solvation = -18608.103145 eV Core-core repulsion = 15326.840707 eV Total energy + Delta-G solvation = -3281.262438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.90432 -39.38784 -37.53291 -36.30820 -33.93347 -32.43565 -31.12516 -30.69977 -28.62591 -26.49023 -24.70442 -22.90766 -21.93402 -21.27157 -19.68366 -18.09978 -17.21229 -16.91110 -16.53213 -15.88346 -15.43376 -15.33105 -14.99178 -14.78564 -14.19608 -14.03200 -13.77041 -13.63972 -13.20787 -12.60990 -12.35422 -12.10865 -11.87770 -11.73057 -11.43091 -11.13995 -11.09566 -11.05631 -10.71135 -10.46599 -10.26192 -10.24825 -9.01899 -8.86268 -7.65221 -7.61168 -7.54165 -6.20408 -4.66277 1.03910 1.26887 3.14413 3.14726 3.19734 3.21773 3.52500 4.09074 4.13690 4.57005 4.57061 4.64469 4.77904 5.01740 5.10488 5.16224 5.21425 5.27982 5.49678 5.67179 5.67856 5.81168 5.85030 5.90031 5.93692 6.09641 6.31439 6.48070 6.48431 6.57574 7.04748 7.41470 7.47005 7.89697 8.05893 8.30045 9.00463 9.50099 10.57995 10.76180 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.051101 B = 0.002717 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.804195 B =10302.203463 C =10824.255104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.769 5.769 12 C 0.137 3.863 13 C -0.140 4.140 14 C 0.127 3.873 15 N -0.742 5.742 16 C 0.194 3.806 17 C -0.176 4.176 18 C -0.078 4.078 19 C -0.159 4.159 20 C -0.106 4.106 21 C 0.012 3.988 22 F -0.146 7.146 23 H 0.269 0.731 24 H 0.380 0.620 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.403 0.597 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 -21.257 0.007 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.425 5.425 12 C 0.011 3.989 13 C -0.178 4.178 14 C 0.003 3.997 15 N -0.371 5.371 16 C 0.089 3.911 17 C -0.199 4.199 18 C -0.097 4.097 19 C -0.179 4.179 20 C -0.126 4.126 21 C -0.012 4.012 22 F -0.125 7.125 23 H 0.080 0.920 24 H 0.211 0.789 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.238 0.762 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.102 -20.959 0.007 21.187 hybrid contribution 1.581 0.879 0.001 1.809 sum 4.684 -20.080 0.007 20.619 Atomic orbital electron populations 1.70008 1.07069 1.27415 1.35235 1.25713 0.94632 1.00316 0.92610 0.86423 0.79804 0.80996 0.79442 1.19279 1.20541 1.19285 1.20850 0.93552 0.89418 1.54513 0.91474 1.18221 0.87213 0.82432 0.76352 1.90598 1.14090 1.86855 1.54874 1.46125 1.08548 1.04859 1.82954 1.20705 0.93672 0.83512 1.00966 1.21954 0.99419 0.93449 1.02973 1.21343 0.91912 0.84731 1.01761 1.44733 1.09202 1.01754 1.81375 1.17892 0.92898 0.84381 0.95961 1.20658 0.92596 0.97987 1.08656 1.20987 0.99870 0.91848 0.97023 1.20748 0.92003 0.99365 1.05827 1.20914 0.96857 0.94371 1.00436 1.17182 0.76860 0.93167 1.14008 1.91437 1.31027 1.95108 1.94922 0.92017 0.78864 0.93152 0.93151 0.91040 0.91033 0.91628 0.91626 0.76183 0.84941 0.85505 0.85600 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.11 11.83 55.55 0.66 -22.46 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 20.10 29.56 -169.99 -5.02 15.07 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -15.43 9.54 -35.63 -0.34 -15.77 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 9 C 0.55 15.76 7.75 -12.99 -0.10 15.66 16 10 O -0.58 -18.87 15.02 5.20 0.08 -18.79 16 11 N -0.77 -16.88 5.55 -61.72 -0.34 -17.22 16 12 C 0.14 2.49 5.67 -4.05 -0.02 2.46 16 13 C -0.14 -1.78 5.44 -26.73 -0.15 -1.93 16 14 C 0.13 1.43 4.92 -4.04 -0.02 1.41 16 15 N -0.74 -8.24 5.74 -58.56 -0.34 -8.57 16 16 C 0.19 2.21 6.66 -83.67 -0.56 1.66 16 17 C -0.18 -1.80 9.31 -39.39 -0.37 -2.16 16 18 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 19 C -0.16 -1.33 10.04 -39.55 -0.40 -1.72 16 20 C -0.11 -1.00 10.02 -39.55 -0.40 -1.40 16 21 C 0.01 0.13 7.31 -39.26 -0.29 -0.16 16 22 F -0.15 -1.77 16.64 2.25 0.04 -1.73 16 23 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 24 H 0.38 7.25 8.45 -40.82 -0.35 6.91 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 30 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 31 H 0.40 4.27 7.96 -40.82 -0.33 3.94 16 32 H 0.13 1.25 6.74 -52.49 -0.35 0.89 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -34.40 309.80 -7.74 -42.14 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.35 Total: 7.58 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -3.13 Total: -0.69 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.02 Total: -48.25 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.08 Total: -18.79 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.40 -7.74 -42.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357747989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.675 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds