Wall clock time and date at job start Mon Mar 30 2020 04:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99439 * 2 1 4 4 H 1.48503 * 109.47399 * 240.00009 * 3 2 1 5 5 H 1.48498 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46848 * 120.00110 * 3 2 1 7 7 C 1.40045 * 120.00636 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00442 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99484 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00564 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99968 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00447 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47294 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.46995 * 180.02562 * 14 13 12 16 16 C 1.39843 * 120.00020 * 180.02562 * 15 14 13 17 17 C 1.38843 * 120.07818 * 0.02562 * 16 15 14 18 18 C 1.38152 * 119.94733 * 180.02562 * 17 16 15 19 19 C 1.38269 * 120.11481 * 0.02562 * 18 17 16 20 20 C 1.38291 * 120.16146 * 0.02562 * 19 18 17 21 21 C 1.38281 * 120.04734 * 359.67259 * 20 19 18 22 22 F 1.35106 * 120.05874 * 180.32389 * 21 20 19 23 23 H 0.96999 * 120.00506 * 359.97438 * 1 2 3 24 24 H 0.97006 * 119.99798 * 0.02562 * 11 9 7 25 25 H 1.09001 * 109.47054 * 59.99647 * 12 11 9 26 26 H 1.09004 * 109.47074 * 300.00161 * 12 11 9 27 27 H 1.09001 * 109.46832 * 60.00150 * 13 12 11 28 28 H 1.08993 * 109.47194 * 299.99671 * 13 12 11 29 29 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 30 30 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 31 31 H 0.96998 * 120.00192 * 359.97438 * 15 14 13 32 32 H 1.07994 * 120.01954 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.94093 * 179.97438 * 18 17 16 34 34 H 1.07994 * 119.92282 * 180.02562 * 19 18 17 35 35 H 1.07997 * 119.97982 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6966 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0071 -1.2127 -0.0005 8 1 3.0871 -1.2127 -0.0010 9 6 1.2753 -2.4804 -0.0005 10 8 0.0584 -2.4806 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2168 -4.9164 0.0000 13 6 2.2112 -6.0792 -0.0007 14 6 1.4462 -7.4043 0.0005 15 7 2.3983 -8.5177 0.0004 16 6 1.9323 -9.8362 0.0008 17 6 0.5676 -10.0919 0.0009 18 6 0.1102 -11.3955 0.0019 19 6 1.0091 -12.4462 0.0034 20 6 2.3694 -12.1968 0.0044 21 6 2.8346 -10.8946 -0.0029 22 9 4.1634 -10.6507 -0.0085 23 1 -0.4851 0.8400 0.0004 24 1 2.9193 -3.6476 -0.0002 25 1 0.5898 -4.9744 -0.8897 26 1 0.5905 -4.9740 0.8903 27 1 2.8385 -6.0214 0.8888 28 1 2.8370 -6.0215 -0.8912 29 1 0.8205 -7.4618 0.8912 30 1 0.8186 -7.4624 -0.8888 31 1 3.3519 -8.3404 -0.0008 32 1 -0.1356 -9.2724 0.0010 33 1 -0.9514 -11.5943 0.0024 34 1 0.6482 -13.4640 0.0038 35 1 3.0689 -13.0196 0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357747989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:16 Heat of formation + Delta-G solvation = -93.151313 kcal Electronic energy + Delta-G solvation = -18609.158468 eV Core-core repulsion = 15326.840707 eV Total energy + Delta-G solvation = -3282.317761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.75681 -40.16519 -39.45303 -37.41569 -35.50680 -34.52982 -32.52439 -31.42064 -29.75439 -28.32743 -25.97063 -23.88222 -22.82110 -22.31034 -21.67856 -19.30412 -18.72632 -17.82821 -17.40729 -17.37237 -16.87110 -16.46763 -16.31742 -15.90585 -15.51310 -15.22426 -15.06602 -14.81789 -14.28899 -13.98190 -13.93508 -13.25600 -13.18875 -12.87317 -12.73085 -12.66126 -12.56303 -12.50733 -12.09657 -12.05584 -11.93556 -11.07936 -10.92562 -9.90087 -9.76115 -9.50451 -8.41217 -8.30196 -6.86950 0.29789 0.53315 1.40257 1.43628 1.55511 2.21019 2.29702 2.46103 2.79635 3.13794 3.36740 3.60498 3.87220 3.98435 4.02012 4.05710 4.15531 4.45535 4.46557 4.58394 4.58983 4.66379 4.78814 5.10997 5.12894 5.12962 5.19243 5.31014 5.41609 5.61489 5.83704 5.86408 6.21269 6.23734 6.27435 6.64520 6.85655 7.53353 8.47663 8.66106 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.051101 B = 0.002717 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.804195 B =10302.203463 C =10824.255104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.633 6.633 11 N -0.757 5.757 12 C 0.138 3.862 13 C -0.119 4.119 14 C 0.136 3.864 15 N -0.744 5.744 16 C 0.175 3.825 17 C -0.189 4.189 18 C -0.078 4.078 19 C -0.155 4.155 20 C -0.110 4.110 21 C -0.012 4.012 22 F -0.156 7.156 23 H 0.275 0.725 24 H 0.396 0.604 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.404 0.596 32 H 0.135 0.865 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -22.015 0.009 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.521 6.521 11 N -0.412 5.412 12 C 0.012 3.988 13 C -0.157 4.157 14 C 0.011 3.989 15 N -0.374 5.374 16 C 0.071 3.929 17 C -0.212 4.212 18 C -0.097 4.097 19 C -0.175 4.175 20 C -0.129 4.129 21 C -0.036 4.036 22 F -0.135 7.135 23 H 0.085 0.915 24 H 0.230 0.770 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.239 0.761 32 H 0.153 0.847 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.419 -21.783 0.008 22.227 hybrid contribution 1.144 0.966 0.000 1.497 sum 5.563 -20.817 0.009 21.547 Atomic orbital electron populations 1.70180 1.09565 1.29073 1.36415 1.27004 0.95548 1.05061 0.91189 0.85051 0.78175 0.74633 0.80302 1.17798 1.19935 1.17809 1.21426 0.94799 0.90123 1.54797 0.89337 1.18627 0.86857 0.84461 0.76106 1.90550 1.16241 1.88032 1.57260 1.45792 1.09396 1.04758 1.81222 1.20800 0.94605 0.83712 0.99658 1.21721 0.98138 0.91862 1.04009 1.21164 0.91705 0.84078 1.01920 1.44612 1.09096 1.01681 1.82004 1.18094 0.93535 0.84344 0.96951 1.20868 0.92250 0.99046 1.09016 1.21348 1.01366 0.91247 0.95711 1.21135 0.91430 1.00734 1.04159 1.21230 0.97911 0.94099 0.99677 1.17488 0.76546 0.94091 1.15467 1.91404 1.31693 1.95251 1.95153 0.91516 0.76995 0.94521 0.94517 0.89974 0.89970 0.91554 0.91552 0.76052 0.84679 0.83053 0.82730 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.64 11.83 21.83 0.26 -50.38 16 2 C 0.03 1.51 5.50 85.30 0.47 1.98 16 3 Si 1.00 40.79 29.56 68.60 2.03 42.82 16 4 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.57 -32.58 9.54 24.83 0.24 -32.34 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.54 31.15 7.75 86.36 0.67 31.82 16 10 O -0.63 -42.72 15.02 -4.31 -0.06 -42.79 16 11 N -0.76 -33.40 5.55 -467.41 -2.59 -36.00 16 12 C 0.14 5.04 5.67 86.38 0.49 5.53 16 13 C -0.12 -2.93 5.44 30.60 0.17 -2.77 16 14 C 0.14 2.98 4.92 86.38 0.42 3.40 16 15 N -0.74 -16.06 5.74 -339.18 -1.95 -18.01 16 16 C 0.18 3.89 6.66 38.21 0.25 4.14 16 17 C -0.19 -3.65 9.31 22.39 0.21 -3.44 16 18 C -0.08 -1.18 10.04 22.26 0.22 -0.96 16 19 C -0.15 -2.17 10.04 22.29 0.22 -1.95 16 20 C -0.11 -1.88 10.02 22.29 0.22 -1.66 16 21 C -0.01 -0.27 7.31 22.48 0.16 -0.11 16 22 F -0.16 -3.73 16.64 44.97 0.75 -2.98 16 23 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 24 H 0.40 14.80 8.45 -92.70 -0.78 14.02 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.45 7.95 -2.39 -0.02 1.43 16 30 H 0.07 1.45 7.95 -2.39 -0.02 1.43 16 31 H 0.40 8.30 7.96 -92.71 -0.74 7.56 16 32 H 0.14 2.44 6.74 -2.91 -0.02 2.42 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -76.64 309.80 1.79 -74.85 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.40 Total: 28.83 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 3.75 Total: 3.65 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -4.28 Total: -104.39 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.06 Total: -42.79 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.75 Total: -2.98 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -76.64 1.79 -74.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357747989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.298 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds