Wall clock time and date at job start Mon Mar 30 2020 04:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00081 * 2 1 4 4 H 1.48494 * 109.47213 * 270.00023 * 3 2 1 5 5 H 1.48499 * 109.47088 * 29.99898 * 3 2 1 6 6 H 1.48506 * 109.47165 * 149.99951 * 3 2 1 7 7 C 1.37878 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99674 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00650 * 180.02562 * 7 2 1 10 10 N 1.46494 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.31456 * 119.99913 * 245.66444 * 10 9 7 12 12 C 1.42186 * 120.41980 * 185.86280 * 11 10 9 13 13 C 1.35807 * 117.89054 * 179.74722 * 12 11 10 14 14 C 1.41941 * 118.57979 * 0.47684 * 13 12 11 15 15 C 1.47728 * 119.67082 * 179.75777 * 14 13 12 16 16 O 1.21567 * 120.00039 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99984 * 180.02562 * 15 14 13 18 18 C 1.46497 * 120.00173 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47705 * 180.02562 * 18 17 15 20 20 O 1.42905 * 109.46816 * 64.99861 * 19 18 17 21 21 N 1.31195 * 120.66057 * 359.77982 * 14 13 12 22 22 N 1.28433 * 122.36669 * 359.97438 * 21 14 13 23 23 H 0.97004 * 119.33579 * 180.02562 * 22 21 14 24 24 H 0.97006 * 120.00113 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47044 * 300.00186 * 9 7 2 26 26 H 1.09007 * 109.46649 * 59.99901 * 9 7 2 27 27 H 1.08003 * 121.05222 * 359.97438 * 12 11 10 28 28 H 1.08007 * 120.71044 * 180.25763 * 13 12 11 29 29 H 0.97007 * 120.00186 * 0.02562 * 17 15 14 30 30 H 1.09004 * 109.47131 * 300.00530 * 18 17 15 31 31 H 1.09002 * 109.47119 * 60.00213 * 18 17 15 32 32 H 1.08993 * 109.47274 * 185.00038 * 19 18 17 33 33 H 1.08996 * 109.46713 * 305.00586 * 19 18 17 34 34 H 0.96694 * 114.00118 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.6608 -3.0388 1.0374 12 6 5.2458 -4.3342 0.9981 13 6 5.9215 -4.7596 2.0966 14 6 5.9987 -3.8983 3.2222 15 6 6.7232 -4.3389 4.4319 16 8 7.2500 -5.4341 4.4598 17 7 6.8002 -3.5266 5.5046 18 6 7.5182 -3.9637 6.7044 19 6 7.4546 -2.8638 7.7661 20 8 6.0997 -2.6809 8.1819 21 7 5.4327 -2.7149 3.1992 22 7 4.7905 -2.2798 2.1756 23 1 4.3892 -1.3971 2.2063 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8745 -0.6808 0.8906 27 1 5.1586 -4.9584 0.1211 28 1 6.3872 -5.7339 2.1147 29 1 6.3796 -2.6527 5.4825 30 1 7.0564 -4.8711 7.0938 31 1 8.5591 -4.1654 6.4517 32 1 8.0623 -3.1513 8.6240 33 1 7.8349 -1.9322 7.3472 34 1 5.9838 -1.9967 8.8553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362676238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:41 Heat of formation + Delta-G solvation = -28.505657 kcal Electronic energy + Delta-G solvation = -19248.816414 eV Core-core repulsion = 15989.221860 eV Total energy + Delta-G solvation = -3259.594554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.50354 -40.54912 -38.01486 -37.12209 -35.53807 -34.93802 -34.79843 -32.35783 -30.32105 -29.18422 -26.58712 -25.39490 -23.58244 -22.73479 -22.14290 -20.22091 -19.31685 -19.03996 -18.46922 -17.64129 -17.09292 -16.87440 -16.82984 -16.20912 -15.84123 -15.55620 -15.13636 -14.80541 -14.58912 -14.47340 -14.04568 -13.89372 -13.64677 -13.12581 -12.73613 -12.61747 -12.28381 -12.11872 -11.87036 -11.66025 -11.56533 -11.34495 -10.93139 -10.89616 -10.24099 -10.15652 -8.66929 -8.39621 -6.48805 -0.37402 0.27529 1.29993 1.32822 1.42683 1.44901 1.75445 2.09776 2.25659 2.57093 2.92013 3.15312 3.34579 3.39151 3.84380 3.94886 4.09377 4.28582 4.34158 4.51691 4.56782 4.79795 4.81398 4.88897 4.94362 5.04301 5.06540 5.36414 5.40012 5.54160 6.09519 6.38386 6.56161 6.91241 6.93596 6.98571 7.09491 7.19461 8.76834 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.004344 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.272616 B = 6444.272072 C = 7411.021029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.242 1.242 7 C -0.535 4.535 8 H 0.024 0.976 9 C 0.161 3.839 10 N -0.572 5.572 11 C 0.319 3.681 12 C -0.101 4.101 13 C -0.061 4.061 14 C -0.006 4.006 15 C 0.595 3.405 16 O -0.560 6.560 17 N -0.702 5.702 18 C 0.111 3.889 19 C 0.067 3.933 20 O -0.597 6.597 21 N -0.175 5.175 22 N -0.465 5.465 23 H 0.443 0.557 24 H 0.272 0.728 25 H 0.042 0.958 26 H 0.004 0.996 27 H 0.179 0.821 28 H 0.180 0.820 29 H 0.416 0.584 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.554 -3.301 16.269 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.165 1.165 7 C -0.573 4.573 8 H 0.042 0.958 9 C 0.032 3.968 10 N -0.297 5.297 11 C 0.049 3.951 12 C -0.129 4.129 13 C -0.087 4.087 14 C -0.184 4.184 15 C 0.379 3.621 16 O -0.437 6.437 17 N -0.354 5.354 18 C -0.012 4.012 19 C -0.011 4.011 20 O -0.406 6.406 21 N -0.003 5.003 22 N -0.204 5.204 23 H 0.291 0.709 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.021 0.979 27 H 0.197 0.803 28 H 0.197 0.803 29 H 0.252 0.748 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 19.203 -3.878 15.526 24.997 hybrid contribution -0.719 1.786 0.149 1.931 sum 18.484 -2.092 15.675 24.326 Atomic orbital electron populations 1.70048 1.08417 1.28725 1.50957 1.25991 0.95733 1.03526 0.93372 0.85598 0.79427 0.77570 0.79677 1.18915 1.20018 1.16521 1.21154 0.90565 0.93284 1.52347 0.95799 1.19829 0.94359 0.86846 0.95795 1.73092 1.16346 1.16229 1.23995 1.21436 0.94873 0.94415 0.84413 1.21399 0.98048 0.92064 1.01435 1.21857 0.95976 1.00990 0.89888 1.21536 1.06230 0.92271 0.98321 1.17204 0.78978 0.84043 0.81870 1.90775 1.48408 1.21721 1.82754 1.45806 1.55275 1.20564 1.13789 1.21688 0.97758 0.98230 0.83495 1.22476 0.83902 0.97818 0.96873 1.86503 1.27433 1.63178 1.63462 1.70679 1.01222 1.15635 1.12793 1.44334 1.46666 1.20066 1.09323 0.70868 0.91907 0.94015 0.97859 0.80341 0.80297 0.74773 0.91750 0.88550 0.89330 0.91359 0.74943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 2 C 0.01 0.72 5.47 84.66 0.46 1.18 16 3 Si 0.96 42.44 27.47 68.60 1.88 44.32 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 7 C -0.54 -31.94 9.94 25.60 0.25 -31.68 16 8 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 9 C 0.16 7.88 5.09 85.63 0.44 8.32 16 10 N -0.57 -26.11 10.55 -348.03 -3.67 -29.78 16 11 C 0.32 11.89 7.53 134.64 1.01 12.90 16 12 C -0.10 -2.93 10.13 22.69 0.23 -2.70 16 13 C -0.06 -1.56 9.64 22.62 0.22 -1.34 16 14 C -0.01 -0.17 6.83 42.67 0.29 0.12 16 15 C 0.60 15.17 7.80 86.75 0.68 15.84 16 16 O -0.56 -16.46 16.36 -3.93 -0.06 -16.52 16 17 N -0.70 -14.09 5.49 -466.08 -2.56 -16.65 16 18 C 0.11 1.68 6.06 86.38 0.52 2.20 16 19 C 0.07 0.61 7.18 71.98 0.52 1.13 16 20 O -0.60 -7.83 13.61 -148.98 -2.03 -9.86 16 21 N -0.17 -5.03 10.59 -48.18 -0.51 -5.54 16 22 N -0.47 -15.70 6.17 -54.94 -0.34 -16.04 16 23 H 0.44 15.22 6.26 -220.00 -1.38 13.84 16 24 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 25 H 0.04 2.03 7.57 -2.39 -0.02 2.01 16 26 H 0.00 0.17 4.59 -2.38 -0.01 0.16 16 27 H 0.18 4.44 8.06 -2.91 -0.02 4.41 16 28 H 0.18 3.65 7.70 -2.91 -0.02 3.63 16 29 H 0.42 7.82 7.79 -92.70 -0.72 7.10 16 30 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.40 1.68 9.12 -74.06 -0.68 1.00 16 Total: -1.00 -77.58 300.65 -4.02 -81.61 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -1.66 Total: 21.10 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.62 Total: 5.98 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -6.78 Total: -126.62 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -2.09 Total: -26.38 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -77.58 -4.02 -81.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362676238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.100 kcal (2) G-P(sol) polarization free energy of solvation -77.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds