Wall clock time and date at job start Mon Mar 30 2020 05:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47463 * 2 1 4 4 C 1.50700 * 109.47048 * 120.00129 * 2 1 3 5 5 H 1.08003 * 120.00224 * 119.99906 * 4 2 1 6 6 C 1.37873 * 120.00190 * 300.00041 * 4 2 1 7 7 N 1.31514 * 120.00055 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00133 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47431 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47440 * 119.99846 * 8 6 4 11 11 H 1.48511 * 109.46995 * 239.99789 * 8 6 4 12 12 N 1.46501 * 109.47141 * 240.00057 * 2 1 3 13 13 C 1.46506 * 119.99898 * 300.00040 * 12 2 1 14 14 C 1.34775 * 120.00253 * 119.99806 * 12 2 1 15 15 O 1.21565 * 119.99570 * 4.79936 * 14 12 2 16 16 C 1.47703 * 120.00173 * 184.79413 * 14 12 2 17 17 C 1.39739 * 120.13569 * 314.26712 * 16 14 12 18 18 C 1.37850 * 120.02009 * 179.97438 * 17 16 14 19 19 C 1.38390 * 120.28787 * 0.02662 * 18 17 16 20 20 C 1.38781 * 120.26629 * 359.97438 * 19 18 17 21 21 N 1.39873 * 120.01233 * 179.97438 * 20 19 18 22 22 C 1.38999 * 119.97254 * 359.72296 * 20 19 18 23 23 F 1.35109 * 120.13885 * 180.30174 * 22 20 19 24 24 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47008 * 299.99877 * 1 2 3 26 26 H 1.08997 * 109.47100 * 59.99884 * 1 2 3 27 27 H 0.96998 * 120.00395 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47003 * 275.22300 * 13 12 2 29 29 H 1.09001 * 109.46836 * 155.21985 * 13 12 2 30 30 H 1.09006 * 109.47176 * 35.22329 * 13 12 2 31 31 H 1.08003 * 119.99246 * 359.97381 * 17 16 14 32 32 H 1.08001 * 119.86107 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.86999 * 180.02562 * 19 18 17 34 34 H 0.96999 * 119.99817 * 359.97438 * 21 20 19 35 35 H 0.97001 * 119.99423 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2864 3.6038 10 1 3.1472 -0.1860 4.8160 11 1 1.1677 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.1589 1.0997 -1.8490 16 6 3.1980 -0.6974 -3.3403 17 6 3.6717 -2.0118 -3.3201 18 6 4.0484 -2.6273 -4.4947 19 6 3.9604 -1.9488 -5.6976 20 6 3.4916 -0.6430 -5.7315 21 7 3.4053 0.0380 -6.9502 22 6 3.1029 -0.0140 -4.5545 23 9 2.6402 1.2551 -4.5843 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7095 1.1617 3.4844 28 1 2.3631 -2.7373 -0.8942 29 1 1.7142 -2.3088 -2.4953 30 1 0.6524 -2.2771 -1.0671 31 1 3.7428 -2.5458 -2.3840 32 1 4.4146 -3.6432 -4.4760 33 1 4.2569 -2.4376 -6.6138 34 1 3.6735 -0.4023 -7.7718 35 1 3.0773 0.9506 -6.9736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380213597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:57 Heat of formation + Delta-G solvation = -45.366239 kcal Electronic energy + Delta-G solvation = -20324.500010 eV Core-core repulsion = 17044.254365 eV Total energy + Delta-G solvation = -3280.245645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -48.57716 -39.73259 -38.23013 -35.30939 -34.66780 -32.78993 -30.82098 -29.36432 -28.38366 -26.20714 -25.20594 -23.93419 -22.17746 -21.10368 -18.87801 -17.62036 -17.07857 -17.00894 -16.30674 -15.79763 -15.32981 -15.19109 -14.93937 -14.61840 -14.32292 -14.07845 -13.06070 -12.87813 -12.72655 -12.60253 -12.37639 -11.84127 -11.68112 -11.52608 -11.29794 -11.04291 -10.77516 -10.68590 -10.59250 -10.22270 -10.14322 -9.15211 -9.06281 -8.71005 -8.40567 -7.63097 -7.56563 -6.04582 -4.12438 1.00921 1.39268 3.26886 3.28395 3.36045 3.38987 3.55416 3.83198 3.98693 4.31833 4.42763 4.81156 4.94489 5.16469 5.24772 5.27178 5.60149 5.79106 5.87979 6.02664 6.10765 6.28592 6.33625 6.41593 6.66988 6.79487 6.85523 7.07512 7.25346 7.44546 7.52858 7.54090 7.73584 8.03500 8.21187 8.51541 8.84652 9.03278 9.53770 11.00900 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.005164 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.573377 B = 5420.775431 C = 5831.662563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.582 5.582 13 C 0.079 3.921 14 C 0.544 3.456 15 O -0.537 6.537 16 C -0.102 4.102 17 C -0.121 4.121 18 C -0.089 4.089 19 C -0.165 4.165 20 C 0.178 3.822 21 N -0.876 5.876 22 C 0.065 3.935 23 F -0.129 7.129 24 H 0.031 0.969 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.263 0.737 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.401 0.599 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 -8.052 -16.897 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.313 5.313 13 C -0.065 4.065 14 C 0.330 3.670 15 O -0.415 6.415 16 C -0.107 4.107 17 C -0.141 4.141 18 C -0.108 4.108 19 C -0.188 4.188 20 C 0.074 3.926 21 N -0.417 5.417 22 C 0.040 3.960 23 F -0.108 7.108 24 H 0.050 0.950 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.229 0.771 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.248 -7.295 -16.545 18.371 hybrid contribution 0.178 -0.143 0.527 0.574 sum 3.426 -7.438 -16.018 17.990 Atomic orbital electron populations 1.22098 0.98080 0.99469 1.00928 1.18998 0.90921 0.94581 0.79778 0.91807 1.21336 1.31711 1.12946 0.90171 0.92145 1.24897 0.94972 0.94991 0.98977 1.69890 1.36486 1.22624 1.23636 0.86423 0.78567 0.79565 0.82726 1.19801 1.20931 1.20968 1.48150 1.48230 1.11741 1.23147 1.21855 1.01571 0.83051 1.00007 1.18034 0.79932 0.86004 0.83071 1.90770 1.55083 1.18317 1.77314 1.20137 1.02165 0.95279 0.93098 1.21195 1.00568 0.92886 0.99482 1.20853 0.98561 0.99918 0.91418 1.20541 1.06461 0.92611 0.99175 1.17616 0.97123 0.92498 0.85410 1.42287 1.76015 1.17897 1.05475 1.17082 1.05785 0.80905 0.92221 1.91494 1.86422 1.35866 1.96985 0.94987 0.88686 0.96930 0.92747 0.92840 0.91893 0.91212 0.84286 0.85014 0.85269 0.77058 0.76942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.93 37.16 0.33 -3.28 16 2 C 0.26 6.77 2.63 -69.08 -0.18 6.58 16 3 H 0.06 1.95 6.91 -51.93 -0.36 1.59 16 4 C -0.52 -14.33 8.37 -34.44 -0.29 -14.62 16 5 H 0.06 1.62 7.50 -52.48 -0.39 1.23 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.58 -13.04 2.75 -176.43 -0.49 -13.52 16 13 C 0.08 1.37 8.30 59.85 0.50 1.86 16 14 C 0.54 12.35 7.07 -12.39 -0.09 12.27 16 15 O -0.54 -14.46 15.86 5.31 0.08 -14.38 16 16 C -0.10 -1.82 5.04 -104.94 -0.53 -2.35 16 17 C -0.12 -1.68 7.47 -39.16 -0.29 -1.97 16 18 C -0.09 -0.95 10.02 -39.67 -0.40 -1.34 16 19 C -0.16 -1.70 9.88 -39.32 -0.39 -2.09 16 20 C 0.18 2.23 6.76 -83.71 -0.57 1.67 16 21 N -0.88 -8.11 9.10 32.44 0.30 -7.82 16 22 C 0.06 1.08 7.26 -38.77 -0.28 0.80 16 23 F -0.13 -2.41 15.79 2.25 0.04 -2.38 16 24 H 0.03 0.71 6.70 -51.93 -0.35 0.37 16 25 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.05 0.87 7.43 -51.93 -0.39 0.49 16 29 H 0.06 0.92 5.34 -51.93 -0.28 0.64 16 30 H 0.07 1.20 6.45 -51.93 -0.34 0.87 16 31 H 0.14 1.84 6.27 -52.48 -0.33 1.51 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.40 2.46 8.84 -40.82 -0.36 2.10 16 35 H 0.40 3.67 8.32 -40.82 -0.34 3.33 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -33.30 295.11 -6.14 -39.44 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.85 Total: 3.63 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.28 Total: -0.81 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.44 Total: -46.14 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.38 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.30 -6.14 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380213597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.923 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds