Wall clock time and date at job start Mon Mar 30 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47463 * 2 1 4 4 C 1.50700 * 109.47048 * 120.00129 * 2 1 3 5 5 H 1.08003 * 120.00224 * 119.99906 * 4 2 1 6 6 C 1.37873 * 120.00190 * 300.00041 * 4 2 1 7 7 N 1.31514 * 120.00055 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00133 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47431 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47440 * 119.99846 * 8 6 4 11 11 H 1.48511 * 109.46995 * 239.99789 * 8 6 4 12 12 N 1.46501 * 109.47141 * 240.00057 * 2 1 3 13 13 C 1.46506 * 119.99898 * 300.00040 * 12 2 1 14 14 C 1.34775 * 120.00253 * 119.99806 * 12 2 1 15 15 O 1.21565 * 119.99570 * 4.79936 * 14 12 2 16 16 C 1.47703 * 120.00173 * 184.79413 * 14 12 2 17 17 C 1.39739 * 120.13569 * 314.26712 * 16 14 12 18 18 C 1.37850 * 120.02009 * 179.97438 * 17 16 14 19 19 C 1.38390 * 120.28787 * 0.02662 * 18 17 16 20 20 C 1.38781 * 120.26629 * 359.97438 * 19 18 17 21 21 N 1.39873 * 120.01233 * 179.97438 * 20 19 18 22 22 C 1.38999 * 119.97254 * 359.72296 * 20 19 18 23 23 F 1.35109 * 120.13885 * 180.30174 * 22 20 19 24 24 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47008 * 299.99877 * 1 2 3 26 26 H 1.08997 * 109.47100 * 59.99884 * 1 2 3 27 27 H 0.96998 * 120.00395 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47003 * 275.22300 * 13 12 2 29 29 H 1.09001 * 109.46836 * 155.21985 * 13 12 2 30 30 H 1.09006 * 109.47176 * 35.22329 * 13 12 2 31 31 H 1.08003 * 119.99246 * 359.97381 * 17 16 14 32 32 H 1.08001 * 119.86107 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.86999 * 180.02562 * 19 18 17 34 34 H 0.96999 * 119.99817 * 359.97438 * 21 20 19 35 35 H 0.97001 * 119.99423 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2864 3.6038 10 1 3.1472 -0.1860 4.8160 11 1 1.1677 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.1589 1.0997 -1.8490 16 6 3.1980 -0.6974 -3.3403 17 6 3.6717 -2.0118 -3.3201 18 6 4.0484 -2.6273 -4.4947 19 6 3.9604 -1.9488 -5.6976 20 6 3.4916 -0.6430 -5.7315 21 7 3.4053 0.0380 -6.9502 22 6 3.1029 -0.0140 -4.5545 23 9 2.6402 1.2551 -4.5843 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7095 1.1617 3.4844 28 1 2.3631 -2.7373 -0.8942 29 1 1.7142 -2.3088 -2.4953 30 1 0.6524 -2.2771 -1.0671 31 1 3.7428 -2.5458 -2.3840 32 1 4.4146 -3.6432 -4.4760 33 1 4.2569 -2.4376 -6.6138 34 1 3.6735 -0.4023 -7.7718 35 1 3.0773 0.9506 -6.9736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380213597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:55 Heat of formation + Delta-G solvation = -69.294782 kcal Electronic energy + Delta-G solvation = -20325.537629 eV Core-core repulsion = 17044.254365 eV Total energy + Delta-G solvation = -3281.283264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -49.84945 -41.17972 -39.52357 -37.20642 -35.71693 -34.67624 -32.17945 -30.94889 -29.49963 -27.74649 -27.32357 -25.28217 -23.18291 -22.77339 -20.49879 -18.70360 -18.64652 -18.24072 -18.01854 -17.37820 -16.81651 -16.53108 -16.19571 -16.00345 -15.75205 -15.50735 -14.74417 -14.45771 -14.07487 -14.00561 -13.72567 -13.49791 -13.05977 -12.96966 -12.88651 -12.73099 -12.68873 -12.37120 -12.18616 -12.10856 -11.60523 -11.19511 -10.80524 -10.53350 -9.84067 -9.38611 -8.53960 -8.15002 -6.32228 -0.10878 0.40658 1.41835 1.43520 1.55380 1.76647 2.20954 2.45361 2.71687 2.86602 3.13018 3.26255 3.53746 4.01924 4.07012 4.35506 4.44997 4.60597 4.66465 4.78321 4.84010 4.97339 4.99642 5.02244 5.03948 5.28970 5.41860 5.46772 5.56640 5.64458 5.78382 5.99515 6.12869 6.38039 6.71083 6.74811 6.89315 7.23151 7.41779 8.90187 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.005164 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.573377 B = 5420.775431 C = 5831.662563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.005 0.995 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.588 5.588 13 C 0.077 3.923 14 C 0.533 3.467 15 O -0.600 6.600 16 C -0.130 4.130 17 C -0.126 4.126 18 C -0.067 4.067 19 C -0.145 4.145 20 C 0.185 3.815 21 N -0.863 5.863 22 C 0.022 3.978 23 F -0.155 7.155 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.016 0.984 27 H 0.265 0.735 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.178 0.822 33 H 0.176 0.824 34 H 0.419 0.581 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -11.913 -18.857 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.157 3.843 3 H 0.023 0.977 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.795 3.205 9 H -0.186 1.186 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.317 5.317 13 C -0.065 4.065 14 C 0.322 3.678 15 O -0.483 6.483 16 C -0.134 4.134 17 C -0.147 4.147 18 C -0.085 4.085 19 C -0.168 4.168 20 C 0.079 3.921 21 N -0.404 5.404 22 C -0.003 4.003 23 F -0.134 7.134 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.161 0.839 32 H 0.196 0.804 33 H 0.193 0.807 34 H 0.251 0.749 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.293 -11.208 -18.564 22.106 hybrid contribution -0.106 1.042 0.995 1.444 sum 4.187 -10.166 -17.569 20.726 Atomic orbital electron populations 1.21883 0.96884 1.00401 0.99901 1.18623 0.91795 0.92154 0.81689 0.97731 1.21570 1.31968 1.13105 0.90827 0.91739 1.25801 0.95017 0.95647 1.02202 1.70041 1.37417 1.23979 1.24441 0.85321 0.78222 0.78451 0.78491 1.18571 1.21278 1.19824 1.48151 1.47965 1.13611 1.21982 1.22120 1.01811 0.80107 1.02440 1.18923 0.78892 0.85451 0.84515 1.90709 1.57481 1.21241 1.78874 1.19828 1.05665 0.97154 0.90768 1.21328 1.00764 0.91202 1.01360 1.21343 0.95869 1.01431 0.89850 1.21128 1.03564 0.91121 1.00976 1.17774 0.96118 0.93325 0.84908 1.42309 1.74994 1.17901 1.05244 1.17499 1.08611 0.80508 0.93697 1.91414 1.87117 1.37689 1.97167 0.92874 0.91060 0.96540 0.92607 0.91466 0.88680 0.91119 0.83857 0.80423 0.80656 0.74877 0.76969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 8.93 71.98 0.64 -6.08 16 2 C 0.26 14.36 2.63 44.24 0.12 14.48 16 3 H 0.00 0.31 6.91 -2.39 -0.02 0.30 16 4 C -0.54 -30.10 8.37 25.60 0.21 -29.88 16 5 H 0.06 3.47 7.50 -2.91 -0.02 3.45 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -54.48 11.32 21.45 0.24 -54.24 16 8 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.59 -27.25 2.75 -830.36 -2.29 -29.54 16 13 C 0.08 2.59 8.30 127.77 1.06 3.65 16 14 C 0.53 25.59 7.07 86.74 0.61 26.21 16 15 O -0.60 -35.20 15.86 -3.92 -0.06 -35.26 16 16 C -0.13 -4.65 5.04 -20.07 -0.10 -4.75 16 17 C -0.13 -3.19 7.47 22.54 0.17 -3.02 16 18 C -0.07 -1.06 10.02 22.21 0.22 -0.84 16 19 C -0.15 -2.20 9.88 22.44 0.22 -1.98 16 20 C 0.19 4.14 6.76 38.17 0.26 4.40 16 21 N -0.86 -13.62 9.10 -51.27 -0.47 -14.09 16 22 C 0.02 0.72 7.26 22.79 0.17 0.89 16 23 F -0.15 -6.16 15.79 44.97 0.71 -5.45 16 24 H 0.05 2.41 6.70 -2.38 -0.02 2.40 16 25 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.07 2.07 7.43 -2.39 -0.02 2.06 16 29 H 0.09 2.58 5.34 -2.39 -0.01 2.57 16 30 H 0.07 2.35 6.45 -2.38 -0.02 2.33 16 31 H 0.14 3.43 6.27 -2.91 -0.02 3.41 16 32 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.42 3.44 8.84 -92.71 -0.82 2.62 16 35 H 0.40 6.81 8.32 -92.71 -0.77 6.04 16 Total: -1.00 -79.93 295.11 3.76 -76.17 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -0.44 Total: 12.43 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.03 Total: 4.23 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -2.51 Total: -97.87 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.06 Total: -35.26 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.71 Total: -5.45 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -79.93 3.76 -76.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380213597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.873 kcal (2) G-P(sol) polarization free energy of solvation -79.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds