Wall clock time and date at job start Mon Mar 30 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21566 * 119.99859 * 359.97438 * 14 13 3 16 16 C 1.47703 * 120.00162 * 180.02562 * 14 13 3 17 17 C 1.39745 * 120.13418 * 359.97438 * 16 14 13 18 18 C 1.37853 * 120.01951 * 179.97438 * 17 16 14 19 19 C 1.38391 * 120.28588 * 0.02661 * 18 17 16 20 20 C 1.38778 * 120.26602 * 359.97438 * 19 18 17 21 21 N 1.39871 * 120.01032 * 179.97438 * 20 19 18 22 22 C 1.38989 * 119.97833 * 359.72799 * 20 19 18 23 23 F 1.35102 * 120.14246 * 180.29424 * 22 20 19 24 24 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 27 27 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 28 28 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 31 31 H 1.08002 * 119.98694 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.85850 * 180.02562 * 18 17 16 33 33 H 1.08002 * 119.86388 * 180.02562 * 19 18 17 34 34 H 0.96999 * 119.99960 * 0.02562 * 21 20 19 35 35 H 0.97001 * 120.00131 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6325 0.4321 16 6 0.0447 3.3252 2.6289 17 6 0.9351 3.3639 3.7053 18 6 0.5684 3.9818 4.8818 19 6 -0.6804 4.5654 5.0038 20 6 -1.5740 4.5339 3.9424 21 7 -2.8350 5.1250 4.0718 22 6 -1.2134 3.9193 2.7491 23 9 -2.0785 3.8919 1.7117 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8295 -0.0694 -2.9455 30 1 2.2720 2.1230 1.9978 31 1 1.9108 2.9095 3.6154 32 1 1.2587 4.0105 5.7119 33 1 -0.9605 5.0480 5.9285 34 1 -3.0850 5.5573 4.9034 35 1 -3.4596 5.1026 3.3300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383630247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:14 Heat of formation + Delta-G solvation = -61.208414 kcal Electronic energy + Delta-G solvation = -20168.908610 eV Core-core repulsion = 16887.975996 eV Total energy + Delta-G solvation = -3280.932613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.48550 -39.59183 -38.26002 -35.03559 -34.60681 -32.36686 -31.20986 -30.24332 -28.62264 -26.91045 -24.06648 -22.83625 -22.11214 -20.47287 -19.33060 -18.10247 -17.42728 -16.88956 -16.25341 -15.50037 -15.36843 -15.22867 -14.88072 -14.51946 -14.29824 -14.13468 -13.16289 -12.87444 -12.70952 -12.65538 -12.02797 -11.87940 -11.51696 -11.43337 -11.22736 -10.93936 -10.84041 -10.71593 -10.28267 -10.14666 -9.59279 -9.04926 -8.99118 -8.75350 -8.47640 -7.78274 -7.64662 -6.10282 -4.19607 0.92659 1.38288 3.25200 3.30045 3.33156 3.35667 3.56597 4.05677 4.13169 4.32606 4.41769 4.83807 4.97430 5.19844 5.21106 5.33325 5.64394 5.93235 6.02019 6.26987 6.39922 6.44041 6.51247 6.67242 6.71740 7.09143 7.24440 7.25214 7.40457 7.47449 7.52817 7.64938 7.76199 7.92946 8.20569 8.67637 8.79795 9.14168 9.47591 10.95126 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030113 B = 0.005035 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.601214 B = 5559.260764 C = 6135.457698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.539 3.461 15 O -0.532 6.532 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.090 4.090 19 C -0.161 4.161 20 C 0.174 3.826 21 N -0.876 5.876 22 C 0.075 3.925 23 F -0.120 7.120 24 H 0.050 0.950 25 H 0.023 0.977 26 H 0.038 0.962 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.401 0.599 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 7.173 15.023 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.324 3.676 15 O -0.410 6.410 16 C -0.117 4.117 17 C -0.140 4.140 18 C -0.109 4.109 19 C -0.185 4.185 20 C 0.069 3.931 21 N -0.417 5.417 22 C 0.050 3.950 23 F -0.099 7.099 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.229 0.771 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.630 7.006 14.071 17.473 hybrid contribution 0.786 0.125 0.159 0.811 sum -6.844 7.131 14.230 17.326 Atomic orbital electron populations 1.21843 0.98324 0.98049 1.01305 1.21938 0.92636 0.99710 1.02328 1.18834 0.94291 0.89227 0.80842 0.93154 1.21264 0.90617 1.38823 1.06471 0.91988 1.24886 0.98605 0.94802 0.95378 1.69910 1.35017 1.37560 1.09414 0.86399 0.84872 0.77741 0.78113 1.19729 1.20898 1.20905 1.46423 1.14162 1.55490 1.18626 1.17946 0.83354 0.79830 0.86511 1.90798 1.51243 1.59418 1.39581 1.20296 0.93586 1.01095 0.96747 1.21084 0.99528 1.01114 0.92281 1.20844 0.95661 0.96838 0.97552 1.20561 0.94363 1.05793 0.97756 1.17666 0.87670 0.95011 0.92749 1.42286 1.14461 1.65318 1.19632 1.17153 0.89023 1.04303 0.84536 1.91527 1.67779 1.94585 1.55974 0.93102 0.95838 0.94317 0.88201 0.94984 0.92624 0.77850 0.84744 0.85047 0.85272 0.77081 0.76913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.88 2.24 -69.09 -0.16 6.73 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.78 11.28 55.43 0.63 -24.15 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.70 -14.91 4.97 -55.93 -0.28 -15.19 16 14 C 0.54 11.50 6.34 -12.39 -0.08 11.42 16 15 O -0.53 -13.24 12.47 5.31 0.07 -13.17 16 16 C -0.11 -1.93 5.88 -104.94 -0.62 -2.54 16 17 C -0.12 -1.59 9.54 -39.16 -0.37 -1.96 16 18 C -0.09 -0.95 10.02 -39.67 -0.40 -1.35 16 19 C -0.16 -1.65 9.88 -39.33 -0.39 -2.04 16 20 C 0.17 2.15 6.76 -83.71 -0.57 1.59 16 21 N -0.88 -8.06 9.10 32.44 0.30 -7.77 16 22 C 0.07 1.22 7.30 -38.77 -0.28 0.94 16 23 F -0.12 -2.23 14.92 2.25 0.03 -2.20 16 24 H 0.05 1.25 7.84 -51.93 -0.41 0.85 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.89 5.65 -51.93 -0.29 0.59 16 27 H 0.10 2.71 5.94 -51.93 -0.31 2.40 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 7.10 6.57 -40.82 -0.27 6.83 16 31 H 0.13 1.60 6.40 -52.49 -0.34 1.26 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.40 2.45 8.84 -40.82 -0.36 2.09 16 35 H 0.40 3.66 8.32 -40.82 -0.34 3.32 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -31.79 295.10 -6.85 -38.65 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -3.94 Total: 9.94 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.08 Total: -6.10 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.64 Total: -47.10 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.03 Total: -2.20 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.79 -6.85 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383630247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.561 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds