Wall clock time and date at job start Mon Mar 30 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21566 * 119.99859 * 359.97438 * 14 13 3 16 16 C 1.47703 * 120.00162 * 180.02562 * 14 13 3 17 17 C 1.39745 * 120.13418 * 359.97438 * 16 14 13 18 18 C 1.37853 * 120.01951 * 179.97438 * 17 16 14 19 19 C 1.38391 * 120.28588 * 0.02661 * 18 17 16 20 20 C 1.38778 * 120.26602 * 359.97438 * 19 18 17 21 21 N 1.39871 * 120.01032 * 179.97438 * 20 19 18 22 22 C 1.38989 * 119.97833 * 359.72799 * 20 19 18 23 23 F 1.35102 * 120.14246 * 180.29424 * 22 20 19 24 24 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 27 27 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 28 28 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 31 31 H 1.08002 * 119.98694 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.85850 * 180.02562 * 18 17 16 33 33 H 1.08002 * 119.86388 * 180.02562 * 19 18 17 34 34 H 0.96999 * 119.99960 * 0.02562 * 21 20 19 35 35 H 0.97001 * 120.00131 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6325 0.4321 16 6 0.0447 3.3252 2.6289 17 6 0.9351 3.3639 3.7053 18 6 0.5684 3.9818 4.8818 19 6 -0.6804 4.5654 5.0038 20 6 -1.5740 4.5339 3.9424 21 7 -2.8350 5.1250 4.0718 22 6 -1.2134 3.9193 2.7491 23 9 -2.0785 3.8919 1.7117 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8295 -0.0694 -2.9455 30 1 2.2720 2.1230 1.9978 31 1 1.9108 2.9095 3.6154 32 1 1.2587 4.0105 5.7119 33 1 -0.9605 5.0480 5.9285 34 1 -3.0850 5.5573 4.9034 35 1 -3.4596 5.1026 3.3300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383630247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:13 Heat of formation + Delta-G solvation = -84.087379 kcal Electronic energy + Delta-G solvation = -20169.900716 eV Core-core repulsion = 16887.975996 eV Total energy + Delta-G solvation = -3281.924720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.73884 -41.01153 -39.54195 -36.93777 -35.59442 -34.27128 -32.94288 -31.51811 -29.68035 -28.79127 -25.56088 -24.57251 -23.12378 -22.13267 -21.16422 -19.52018 -18.57682 -18.03053 -17.81930 -17.07772 -16.76817 -16.68962 -16.13052 -16.04354 -15.73283 -15.44562 -14.82392 -14.59691 -14.03527 -13.88354 -13.62061 -13.45904 -13.19454 -12.92050 -12.82669 -12.70244 -12.48066 -12.14768 -12.06177 -11.70859 -11.58615 -11.04775 -10.74360 -10.52577 -9.89073 -9.59184 -8.54652 -8.15177 -6.32989 -0.19233 0.41737 1.46032 1.46831 1.59139 2.01192 2.32474 2.52932 2.85348 2.90279 3.14571 3.30153 3.77982 3.99267 4.12582 4.40329 4.46779 4.54174 4.62991 4.74594 5.00771 5.03058 5.06379 5.23300 5.28483 5.41903 5.45857 5.54132 5.61296 5.74625 5.80373 5.93123 6.15574 6.38802 6.74325 6.89190 6.94292 7.33141 7.53451 8.90793 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030113 B = 0.005035 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.601214 B = 5559.260764 C = 6135.457698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.974 3.026 10 H -0.258 1.258 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.694 5.694 14 C 0.534 3.466 15 O -0.580 6.580 16 C -0.142 4.142 17 C -0.122 4.122 18 C -0.073 4.073 19 C -0.143 4.143 20 C 0.178 3.822 21 N -0.864 5.864 22 C 0.033 3.967 23 F -0.146 7.146 24 H 0.023 0.977 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.265 0.735 30 H 0.404 0.596 31 H 0.146 0.854 32 H 0.176 0.824 33 H 0.174 0.826 34 H 0.418 0.582 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 8.106 18.843 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.212 1.212 13 N -0.343 5.343 14 C 0.322 3.678 15 O -0.462 6.462 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.092 4.092 19 C -0.166 4.166 20 C 0.072 3.928 21 N -0.406 5.406 22 C 0.008 3.992 23 F -0.125 7.125 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.240 0.760 31 H 0.163 0.837 32 H 0.193 0.807 33 H 0.192 0.808 34 H 0.250 0.750 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -6.519 7.967 17.959 20.700 hybrid contribution 0.358 -0.084 -0.926 0.997 sum -6.160 7.883 17.033 19.754 Atomic orbital electron populations 1.21673 0.97343 0.99087 0.99962 1.21787 0.93403 0.99124 1.01552 1.18431 0.93999 0.89157 0.81038 0.98632 1.21594 0.91033 1.38862 1.07026 0.90725 1.25806 1.03532 0.94270 0.94912 1.70069 1.37110 1.38292 1.09987 0.85274 0.78811 0.77846 0.78249 1.18169 1.20386 1.21156 1.46143 1.14904 1.55508 1.17778 1.18662 0.82446 0.78998 0.87726 1.90759 1.52466 1.61155 1.41808 1.20021 0.95351 1.03454 0.95827 1.21298 0.99261 1.01460 0.92259 1.21338 0.96297 0.94319 0.97199 1.21136 0.93361 1.03857 0.98199 1.17820 0.89084 0.94190 0.91747 1.42301 1.13336 1.64416 1.20509 1.17579 0.89046 1.06969 0.85653 1.91446 1.68508 1.95035 1.57498 0.95755 0.93381 0.94359 0.90696 0.93725 0.92595 0.75964 0.83668 0.80663 0.80845 0.74971 0.76951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.51 71.98 0.61 -5.35 16 2 C -0.12 -6.14 5.45 30.59 0.17 -5.97 16 3 C 0.28 14.77 2.24 44.25 0.10 14.87 16 4 H 0.00 -0.27 7.58 -2.38 -0.02 -0.29 16 5 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 6 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -53.17 11.28 21.45 0.24 -52.93 16 9 Si 0.97 42.19 29.54 68.60 2.03 44.21 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.69 -30.50 4.97 -449.12 -2.23 -32.73 16 14 C 0.53 23.86 6.34 86.74 0.55 24.41 16 15 O -0.58 -31.00 12.47 -3.92 -0.05 -31.04 16 16 C -0.14 -4.90 5.88 -20.07 -0.12 -5.02 16 17 C -0.12 -2.97 9.54 22.54 0.21 -2.76 16 18 C -0.07 -1.18 10.02 22.21 0.22 -0.96 16 19 C -0.14 -2.21 9.88 22.44 0.22 -1.99 16 20 C 0.18 3.99 6.76 38.17 0.26 4.25 16 21 N -0.86 -13.79 9.10 -51.28 -0.47 -14.26 16 22 C 0.03 1.07 7.30 22.79 0.17 1.24 16 23 F -0.15 -5.75 14.92 44.97 0.67 -5.08 16 24 H 0.02 1.26 7.84 -2.39 -0.02 1.24 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.04 1.82 5.65 -2.38 -0.01 1.81 16 27 H 0.07 4.24 5.94 -2.38 -0.01 4.23 16 28 H 0.04 2.12 8.14 -2.39 -0.02 2.11 16 29 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 30 H 0.40 14.75 6.57 -92.71 -0.61 14.14 16 31 H 0.15 3.10 6.40 -2.91 -0.02 3.08 16 32 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.42 3.57 8.84 -92.71 -0.82 2.75 16 35 H 0.40 6.86 8.32 -92.71 -0.77 6.08 16 Total: -1.00 -74.56 295.10 2.22 -72.35 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -1.04 Total: 24.60 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 3.06 Total: -5.12 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -2.46 Total: -99.92 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.05 Total: -31.04 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.67 Total: -5.08 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -74.56 2.22 -72.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383630247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.738 kcal (2) G-P(sol) polarization free energy of solvation -74.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds