Wall clock time and date at job start Mon Mar 30 2020 04:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47138 * 2 1 4 4 C 1.37844 * 125.89725 * 270.02214 * 3 2 1 5 5 C 1.47113 * 127.02394 * 0.03755 * 4 3 2 6 6 O 1.21552 * 119.99454 * 359.71191 * 5 4 3 7 7 O 1.34778 * 120.00338 * 179.71028 * 5 4 3 8 8 C 1.46745 * 105.95453 * 179.77984 * 4 3 2 9 9 C 1.34430 * 106.37238 * 0.22353 * 8 4 3 10 10 N 1.34629 * 125.89754 * 90.19501 * 3 2 1 11 11 C 1.46501 * 124.80858 * 359.97438 * 10 3 2 12 12 C 1.50694 * 109.46954 * 85.25076 * 11 10 3 13 13 O 1.21298 * 120.00246 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99924 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99908 * 179.97438 * 14 12 11 16 16 H 1.08007 * 120.00411 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00131 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99828 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00457 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46808 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47515 * 119.99369 * 19 17 15 22 22 H 1.48496 * 109.47248 * 240.00094 * 19 17 15 23 23 H 1.08991 * 109.47198 * 300.00283 * 1 2 3 24 24 H 1.09001 * 109.46812 * 60.00000 * 1 2 3 25 25 H 1.09000 * 109.47078 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46971 * 239.99830 * 2 1 3 27 27 H 1.09001 * 109.46812 * 120.00000 * 2 1 3 28 28 H 0.96700 * 117.00264 * 180.02562 * 7 5 4 29 29 H 1.07995 * 126.81535 * 180.22565 * 8 4 3 30 30 H 1.08006 * 125.45894 * 179.97438 * 9 8 4 31 31 H 1.09003 * 109.46707 * 205.24905 * 11 10 3 32 32 H 1.08993 * 109.47247 * 325.24504 * 11 10 3 33 33 H 0.96996 * 120.00183 * 0.02562 * 14 12 11 34 34 H 0.97001 * 120.00319 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3014 2.1829 -1.1166 5 6 2.1561 1.7760 -2.5229 6 8 1.7654 0.6575 -2.7946 7 8 2.4562 2.6433 -3.5099 8 6 2.7563 3.4852 -0.6161 9 6 2.7310 3.4053 0.7256 10 7 2.2990 2.1637 1.0906 11 6 2.1416 1.7060 2.4733 12 6 3.3852 0.9720 2.9040 13 8 4.3117 0.8434 2.1318 14 7 3.4680 0.4583 4.1474 15 6 4.5991 -0.2099 4.5391 16 1 5.4238 -0.3251 3.8512 17 6 4.6843 -0.7399 5.8207 18 7 3.6807 -0.6002 6.6575 19 14 6.2258 -1.6498 6.3548 20 1 7.2021 -1.6685 5.2359 21 1 6.8267 -0.9612 7.5251 22 1 5.8739 -3.0435 6.7274 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.3446 2.3306 -4.4181 29 1 3.0525 4.3385 -1.2081 30 1 3.0087 4.1971 1.4057 31 1 1.9830 2.5655 3.1247 32 1 1.2836 1.0370 2.5391 33 1 2.7269 0.5608 4.7648 34 1 3.7400 -0.9705 7.5521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383804400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:42 Heat of formation + Delta-G solvation = -89.198751 kcal Electronic energy + Delta-G solvation = -19984.650906 eV Core-core repulsion = 16690.131751 eV Total energy + Delta-G solvation = -3294.519155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25854 -39.40278 -38.11175 -35.76579 -34.19606 -33.43162 -32.51879 -31.38832 -28.21966 -27.57272 -24.91159 -23.77905 -22.43011 -20.62079 -19.87232 -18.58655 -18.06328 -17.56009 -16.76454 -16.46513 -15.45011 -15.24902 -14.77649 -14.43850 -14.02247 -13.94797 -13.88826 -13.49292 -13.03880 -12.82079 -12.53359 -12.10922 -11.84663 -11.78273 -11.67893 -11.32922 -11.25391 -11.17488 -10.75574 -10.46366 -10.38682 -10.18186 -9.71421 -8.97074 -8.23548 -8.18296 -7.93065 -6.59818 -4.01607 1.75323 2.61013 2.92861 3.04488 3.18568 3.25779 3.56793 3.59178 3.63623 4.04513 4.68169 4.82925 4.93424 5.13305 5.23232 5.28651 5.35627 5.49486 5.56802 5.69143 5.80606 5.96328 6.03708 6.11918 6.19607 6.36473 6.42245 6.75521 6.98100 7.34026 7.39159 7.41931 7.83964 8.27489 8.36817 8.97786 9.28304 9.77499 10.56948 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030892 B = 0.004433 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.152484 B = 6314.349486 C = 6405.990277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 C 0.149 3.851 4 C -0.246 4.246 5 C 0.561 3.439 6 O -0.535 6.535 7 O -0.517 6.517 8 C -0.150 4.150 9 C -0.010 4.010 10 N -0.405 5.405 11 C 0.083 3.917 12 C 0.415 3.585 13 O -0.576 6.576 14 N -0.550 5.550 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.027 3.973 18 N -0.896 5.896 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.279 1.279 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.405 0.595 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.394 0.606 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 6.080 -9.552 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C 0.029 3.971 4 C -0.254 4.254 5 C 0.408 3.592 6 O -0.427 6.427 7 O -0.327 6.327 8 C -0.174 4.174 9 C -0.136 4.136 10 N -0.078 5.078 11 C -0.042 4.042 12 C 0.200 3.800 13 O -0.460 6.460 14 N -0.186 5.186 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.758 3.242 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.262 0.738 29 H 0.165 0.835 30 H 0.183 0.817 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.227 0.773 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.544 5.717 -9.160 12.626 hybrid contribution 0.343 -0.480 0.304 0.664 sum -6.201 5.237 -8.856 12.012 Atomic orbital electron populations 1.21653 0.94191 1.02052 1.01725 1.20374 0.96186 0.89483 1.04892 1.20439 0.98150 0.93679 0.84835 1.19082 1.20812 0.97320 0.88150 1.19848 0.72545 0.81481 0.85308 1.90829 1.45651 1.21627 1.84594 1.84604 1.81783 1.47172 1.19161 1.21861 1.05687 0.96819 0.92990 1.21667 1.07544 0.88195 0.96145 1.43136 1.48336 1.11024 1.05287 1.21791 0.99958 1.01703 0.80791 1.19864 0.89311 0.86525 0.84343 1.90623 1.39501 1.62948 1.52905 1.41816 1.17931 1.47980 1.10918 1.19777 0.95260 1.30316 0.97889 0.87666 1.25304 0.98904 0.97751 0.95610 1.69605 1.31222 1.45409 1.07370 0.85764 0.80864 0.78797 0.78762 1.19092 1.20546 1.20529 0.93158 0.92254 0.91867 0.87947 0.90460 0.73839 0.83525 0.81702 0.87147 0.87584 0.77253 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.90 37.16 0.37 -1.44 16 2 C -0.07 -1.15 5.38 -27.88 -0.15 -1.30 16 3 C 0.15 2.58 6.15 -81.51 -0.50 2.08 16 4 C -0.25 -4.18 6.33 -103.01 -0.65 -4.84 16 5 C 0.56 8.98 8.32 34.33 0.29 9.26 16 6 O -0.54 -9.43 15.66 -19.31 -0.30 -9.73 16 7 O -0.52 -6.43 13.33 -40.70 -0.54 -6.97 16 8 C -0.15 -2.30 11.00 -37.49 -0.41 -2.72 16 9 C -0.01 -0.15 11.30 -16.85 -0.19 -0.34 16 10 N -0.40 -6.77 2.18 -113.53 -0.25 -7.02 16 11 C 0.08 1.33 5.97 -5.20 -0.03 1.30 16 12 C 0.42 9.13 7.85 -10.99 -0.09 9.04 16 13 O -0.58 -15.20 15.98 5.54 0.09 -15.11 16 14 N -0.55 -12.94 5.29 -10.96 -0.06 -13.00 16 15 C -0.30 -8.04 9.68 -14.93 -0.14 -8.19 16 16 H 0.11 2.98 7.16 -52.48 -0.38 2.61 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 18 N -0.90 -23.06 13.05 55.50 0.72 -22.34 16 19 Si 0.93 20.24 29.55 -169.99 -5.02 15.21 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.10 1.75 6.51 -51.93 -0.34 1.41 16 27 H 0.08 1.31 7.68 -51.93 -0.40 0.91 16 28 H 0.40 2.98 9.11 45.56 0.42 3.39 16 29 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.17 2.05 8.06 -52.48 -0.42 1.62 16 31 H 0.11 1.43 8.11 -51.93 -0.42 1.00 16 32 H 0.11 1.45 7.68 -51.93 -0.40 1.05 16 33 H 0.39 8.67 7.90 -40.82 -0.32 8.34 16 34 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -33.05 306.71 -5.44 -38.48 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -3.09 Total: 12.39 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.61 Total: 3.46 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.42 Total: -42.36 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.76 Total: -31.81 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.05 -5.44 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383804400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.715 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds