Wall clock time and date at job start Mon Mar 30 2020 04:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47138 * 2 1 4 4 C 1.37844 * 125.89725 * 270.02214 * 3 2 1 5 5 C 1.47113 * 127.02394 * 0.03755 * 4 3 2 6 6 O 1.21552 * 119.99454 * 359.71191 * 5 4 3 7 7 O 1.34778 * 120.00338 * 179.71028 * 5 4 3 8 8 C 1.46745 * 105.95453 * 179.77984 * 4 3 2 9 9 C 1.34430 * 106.37238 * 0.22353 * 8 4 3 10 10 N 1.34629 * 125.89754 * 90.19501 * 3 2 1 11 11 C 1.46501 * 124.80858 * 359.97438 * 10 3 2 12 12 C 1.50694 * 109.46954 * 85.25076 * 11 10 3 13 13 O 1.21298 * 120.00246 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99924 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99908 * 179.97438 * 14 12 11 16 16 H 1.08007 * 120.00411 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00131 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99828 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00457 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46808 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47515 * 119.99369 * 19 17 15 22 22 H 1.48496 * 109.47248 * 240.00094 * 19 17 15 23 23 H 1.08991 * 109.47198 * 300.00283 * 1 2 3 24 24 H 1.09001 * 109.46812 * 60.00000 * 1 2 3 25 25 H 1.09000 * 109.47078 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46971 * 239.99830 * 2 1 3 27 27 H 1.09001 * 109.46812 * 120.00000 * 2 1 3 28 28 H 0.96700 * 117.00264 * 180.02562 * 7 5 4 29 29 H 1.07995 * 126.81535 * 180.22565 * 8 4 3 30 30 H 1.08006 * 125.45894 * 179.97438 * 9 8 4 31 31 H 1.09003 * 109.46707 * 205.24905 * 11 10 3 32 32 H 1.08993 * 109.47247 * 325.24504 * 11 10 3 33 33 H 0.96996 * 120.00183 * 0.02562 * 14 12 11 34 34 H 0.97001 * 120.00319 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3014 2.1829 -1.1166 5 6 2.1561 1.7760 -2.5229 6 8 1.7654 0.6575 -2.7946 7 8 2.4562 2.6433 -3.5099 8 6 2.7563 3.4852 -0.6161 9 6 2.7310 3.4053 0.7256 10 7 2.2990 2.1637 1.0906 11 6 2.1416 1.7060 2.4733 12 6 3.3852 0.9720 2.9040 13 8 4.3117 0.8434 2.1318 14 7 3.4680 0.4583 4.1474 15 6 4.5991 -0.2099 4.5391 16 1 5.4238 -0.3251 3.8512 17 6 4.6843 -0.7399 5.8207 18 7 3.6807 -0.6002 6.6575 19 14 6.2258 -1.6498 6.3548 20 1 7.2021 -1.6685 5.2359 21 1 6.8267 -0.9612 7.5251 22 1 5.8739 -3.0435 6.7274 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.3446 2.3306 -4.4181 29 1 3.0525 4.3385 -1.2081 30 1 3.0087 4.1971 1.4057 31 1 1.9830 2.5655 3.1247 32 1 1.2836 1.0370 2.5391 33 1 2.7269 0.5608 4.7648 34 1 3.7400 -0.9705 7.5521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383804400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:41 Heat of formation + Delta-G solvation = -111.919947 kcal Electronic energy + Delta-G solvation = -19985.636171 eV Core-core repulsion = 16690.131751 eV Total energy + Delta-G solvation = -3295.504420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.50138 -40.63572 -39.84956 -36.90752 -36.09949 -34.60819 -33.92048 -33.24465 -29.40752 -28.98960 -26.65546 -25.05071 -23.62809 -21.91003 -21.42363 -20.21818 -19.57975 -18.77165 -18.13985 -17.97812 -16.82313 -16.58243 -16.43388 -15.93440 -15.58116 -15.35565 -15.25758 -14.82275 -14.31423 -14.04541 -13.95079 -13.56200 -13.28336 -13.21530 -12.98069 -12.87945 -12.47589 -12.46028 -12.36384 -12.15462 -11.95389 -11.59650 -11.42640 -10.69453 -10.10336 -9.61715 -9.14600 -8.53612 -6.02752 0.49066 1.32222 1.37119 1.42716 1.54557 1.74722 1.88359 2.26680 2.35071 2.54121 3.08709 3.12347 3.59835 3.87854 3.95233 4.12299 4.17010 4.26169 4.34755 4.44292 4.58806 4.68718 4.93058 4.98015 5.04600 5.24583 5.27984 5.36248 5.70590 5.78658 5.88496 6.10197 6.24584 6.49635 7.04319 7.19662 7.42222 7.97020 8.62804 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030892 B = 0.004433 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.152484 B = 6314.349486 C = 6405.990277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 C 0.126 3.874 4 C -0.267 4.267 5 C 0.561 3.439 6 O -0.559 6.559 7 O -0.507 6.507 8 C -0.154 4.154 9 C -0.016 4.016 10 N -0.413 5.413 11 C 0.094 3.906 12 C 0.419 3.581 13 O -0.624 6.624 14 N -0.558 5.558 15 C -0.335 4.335 16 H 0.076 0.924 17 C -0.003 4.003 18 N -0.912 5.912 19 Si 0.989 3.011 20 H -0.277 1.277 21 H -0.269 1.269 22 H -0.270 1.270 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.427 0.573 29 H 0.169 0.831 30 H 0.194 0.806 31 H 0.150 0.850 32 H 0.133 0.867 33 H 0.401 0.599 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 7.032 -9.222 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.106 4.106 3 C 0.007 3.993 4 C -0.276 4.276 5 C 0.410 3.590 6 O -0.453 6.453 7 O -0.320 6.320 8 C -0.176 4.176 9 C -0.141 4.141 10 N -0.086 5.086 11 C -0.031 4.031 12 C 0.205 3.795 13 O -0.511 6.511 14 N -0.194 5.194 15 C -0.465 4.465 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.552 5.552 19 Si 0.813 3.187 20 H -0.202 1.202 21 H -0.194 1.194 22 H -0.195 1.195 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.288 0.712 29 H 0.187 0.813 30 H 0.211 0.789 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.236 0.764 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.306 6.690 -8.843 13.279 hybrid contribution 0.586 -0.721 0.088 0.933 sum -6.720 5.969 -8.755 12.547 Atomic orbital electron populations 1.21605 0.91807 1.03134 1.02176 1.20322 0.98226 0.88908 1.03179 1.20708 0.98909 0.94211 0.85503 1.19472 1.21014 0.98301 0.88764 1.19808 0.72146 0.81357 0.85735 1.90816 1.46809 1.22624 1.85035 1.84541 1.80989 1.46207 1.20263 1.22191 1.05259 0.96814 0.93351 1.22252 1.06705 0.88291 0.96859 1.43264 1.48682 1.11476 1.05180 1.21813 0.97041 1.03062 0.81190 1.20874 0.90475 0.85082 0.83056 1.90595 1.42024 1.64406 1.54052 1.41817 1.17471 1.48324 1.11816 1.19636 0.96001 1.32556 0.98265 0.90569 1.25958 1.01437 0.97919 0.95150 1.69641 1.32211 1.45619 1.07690 0.84930 0.77561 0.78129 0.78105 1.20165 1.19388 1.19533 0.91688 0.92692 0.90501 0.89687 0.92009 0.71216 0.81319 0.78873 0.83189 0.84952 0.76403 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.90 71.98 0.71 -2.52 16 2 C -0.07 -2.20 5.38 29.85 0.16 -2.04 16 3 C 0.13 4.31 6.15 42.03 0.26 4.56 16 4 C -0.27 -8.90 6.33 -18.82 -0.12 -9.02 16 5 C 0.56 17.60 8.32 70.15 0.58 18.18 16 6 O -0.56 -19.67 15.66 19.67 0.31 -19.37 16 7 O -0.51 -11.77 13.33 -56.89 -0.76 -12.53 16 8 C -0.15 -4.42 11.00 23.62 0.26 -4.16 16 9 C -0.02 -0.45 11.30 83.11 0.94 0.48 16 10 N -0.41 -13.14 2.18 -513.10 -1.12 -14.26 16 11 C 0.09 2.80 5.97 85.63 0.51 3.31 16 12 C 0.42 18.31 7.85 87.65 0.69 19.00 16 13 O -0.62 -33.54 15.98 -3.09 -0.05 -33.59 16 14 N -0.56 -26.26 5.29 -306.97 -1.62 -27.88 16 15 C -0.34 -18.09 9.68 84.04 0.81 -17.28 16 16 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 17 C 0.00 -0.18 5.50 84.93 0.47 0.29 16 18 N -0.91 -46.23 13.05 21.66 0.28 -45.95 16 19 Si 0.99 41.30 29.55 68.60 2.03 43.33 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 3.00 6.51 -2.39 -0.02 2.99 16 27 H 0.06 2.13 7.68 -2.39 -0.02 2.11 16 28 H 0.43 5.47 9.11 -74.06 -0.67 4.79 16 29 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.15 3.33 8.11 -2.39 -0.02 3.31 16 32 H 0.13 3.28 7.68 -2.39 -0.02 3.26 16 33 H 0.40 17.42 7.90 -92.71 -0.73 16.69 16 34 H 0.28 13.29 8.31 -92.71 -0.77 12.52 16 Total: -1.00 -72.19 306.71 4.09 -68.10 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.25 Total: 31.33 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 5.28 Total: 10.81 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -2.46 Total: -88.09 kcal Atomic # 8 Polarization: -64.99 SS G_CDS: -0.50 Total: -65.49 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -72.19 4.09 -68.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383804400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.819 kcal (2) G-P(sol) polarization free energy of solvation -72.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds